Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR193460 Cardamine hirsuta HOM05D006224 ORTHO05D007691 4.2e-71 271.2 129 100.0
C09p56840 Brassica napus HOM05D006224 ORTHO05D007691 3.9e-61 238.0 129 89.1
BolC9t58538H Brassica oleracea HOM05D006224 ORTHO05D007691 3.9e-61 238.0 129 89.1
AT5G19460 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 1.5e-60 236.1 129 88.4
Aa31LG11G5060 Aethionema arabicum HOM05D006224 ORTHO05D007691 2.0e-60 235.7 129 87.6
Carub.0006s1780 Capsella rubella HOM05D006224 ORTHO05D007691 4.4e-60 234.6 129 86.8
Thhalv10013889m.g Eutrema salsugineum HOM05D006224 ORTHO05D007691 2.2e-59 232.3 129 87.6
AL6G30950 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 8.2e-59 230.3 130 87.7
AL6G30960 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 5.3e-58 227.6 129 83.7
Sp6g24950 Schrenkiella parvula HOM05D006224 ORTHO05D007691 6.9e-58 227.3 128 87.5
AT5G19470 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 3.4e-57 224.9 129 82.2
THA.LOC104799742 Tarenaya hassleriana HOM05D006224 ORTHO05D007691 1.4e-55 219.5 129 81.4
Migut.K00473 Erythranthe guttata HOM05D006224 ORTHO05D007691 2.0e-52 209.1 129 75.2
Ciclev10008608m.g Citrus clementina HOM05D006224 ORTHO05D007691 2.2e-51 205.7 129 75.2
MD15G1189600 Malus domestica HOM05D006224 ORTHO05D007691 6.3e-51 204.1 129 74.4
A10p20240 Brassica napus HOM05D006224 ORTHO05D007691 1.1e-50 203.4 108 90.7
FvH4_1g05360 Fragaria vesca HOM05D006224 ORTHO05D007691 1.1e-50 203.4 129 74.4
FAN19G0264 Fragaria x ananassa HOM05D006224 ORTHO05D007691 1.1e-50 203.4 129 74.4
Actinidia07421 Actinidia chinensis HOM05D006224 ORTHO05D007691 1.4e-50 203.0 129 76.0
FAN23G1546 Fragaria x ananassa HOM05D006224 ORTHO05D007691 4.1e-50 201.4 129 73.6
RcHm_v2.0_Chr2g0091041 Rosa chinensis HOM05D006224 ORTHO05D007691 4.1e-50 201.4 129 73.6
Atru.chr7.1298 Acer truncatum HOM05D006224 ORTHO05D007691 7.0e-50 200.7 129 72.9
Ciclev10008605m.g Citrus clementina HOM05D006224 ORTHO05D007691 1.2e-49 199.9 129 72.1
FAN26G2363 Fragaria x ananassa HOM05D006224 ORTHO05D007691 1.2e-49 199.9 129 72.9
FAN26G3318 Fragaria x ananassa HOM05D006224 ORTHO05D007691 1.2e-49 199.9 129 72.9
CiPaw.03G235000 Carya illinoinensis HOM05D006224 ORTHO05D007691 1.6e-49 199.5 129 73.6
Dinv41578 Davidia involucrata HOM05D006224 ORTHO05D007691 2.0e-49 199.1 129 74.4
Cpa.g.sc23.139 Carica papaya HOM05D006224 ORTHO05D007691 3.5e-49 198.4 129 72.9
Hund26119 Selenicereus undatus HOM05D006224 ORTHO05D007691 4.5e-49 198.0 129 73.6
TAR383G0021 Trochodendron aralioides HOM05D006224 ORTHO05D007691 4.5e-49 198.0 129 72.1
CANSAT56G0016 Cannabis sativa HOM05D006224 ORTHO05D007691 1.0e-48 196.8 129 72.9
CANSAT56G1593 Cannabis sativa HOM05D006224 ORTHO05D007691 1.0e-48 196.8 129 72.9
HPP92_009101 Vanilla planifolia HOM05D006224 ORTHO05D007691 1.3e-48 196.4 129 71.3
AUR62011028 Chenopodium quinoa HOM05D006224 ORTHO05D007691 2.2e-48 195.7 129 72.9
Gohir.D08G261300 Gossypium hirsutum HOM05D006224 ORTHO05D007691 2.2e-48 195.7 129 70.5
Gorai.004G279400 Gossypium raimondii HOM05D006224 ORTHO05D007691 2.2e-48 195.7 129 70.5
Lalb_Chr14g0371331 Lupinus albus HOM05D006224 ORTHO05D007691 2.2e-48 195.7 129 72.9
Eucgr.E02819 Eucalyptus grandis HOM05D006224 ORTHO05D007691 2.9e-48 195.3 129 70.5
Gohir.A08G240600 Gossypium hirsutum HOM05D006224 ORTHO05D007691 2.9e-48 195.3 129 70.5
QL02p086060 Quercus lobata HOM05D006224 ORTHO05D007691 3.8e-48 194.9 128 72.7
Cfa003290 Carpinus fangiana HOM05D006224 ORTHO05D007691 5.0e-48 194.5 129 72.1
Nn8g39262 Nelumbo nucifera HOM05D006224 ORTHO05D007691 6.5e-48 194.1 129 67.4
Lsat_1_v5_gn_8_94740 Lactuca sativa HOM05D006224 ORTHO05D007691 8.5e-48 193.7 129 74.4
Peaxi162Scf00560g00629 Petunia axillaris HOM05D006224 ORTHO05D007691 8.5e-48 193.7 129 69.8
Thecc.09G114600 Theobroma cacao HOM05D006224 ORTHO05D007691 8.5e-48 193.7 129 71.3
Medtr6g086510 Medicago truncatula HOM05D006224 ORTHO05D007691 1.1e-47 193.4 129 72.1
Cc06_g09350 Coffea canephora HOM05D006224 ORTHO05D007691 1.5e-47 193.0 129 70.5
DCAR_010440 Daucus carota HOM05D006224 ORTHO05D007691 1.5e-47 193.0 123 74.8
PSO782G3139 Papaver somniferum HOM05D006224 ORTHO05D007691 1.5e-47 193.0 129 69.0
VMungo0464G0392 Vigna mungo HOM05D006224 ORTHO05D007691 1.5e-47 193.0 129 70.5
arahy.Tifrunner.gnm1.ann1.NKB3PQ Arachis hypogaea HOM05D006224 ORTHO05D007691 1.9e-47 192.6 129 71.3
HanXRQChr05g0138301 Helianthus annuus HOM05D006224 ORTHO05D007691 2.5e-47 192.2 129 70.5
Lj2g0020407 Lotus japonicus HOM05D006224 ORTHO05D007691 2.5e-47 192.2 129 71.3
MBI06_g04550_MAGBIO Magnolia biondii HOM05D006224 ORTHO05D007691 2.5e-47 192.2 129 70.5
PGR042G0994 Punica granatum HOM05D006224 ORTHO05D007691 2.5e-47 192.2 159 59.7
PSO063G0773 Papaver somniferum HOM05D006224 ORTHO05D007691 3.2e-47 191.8 129 68.2
GSVIVG01015429001 Vitis vinifera HOM05D006224 ORTHO05D007691 3.2e-47 191.8 129 69.0
QL02p086023 Quercus lobata HOM05D006224 ORTHO05D007691 5.5e-47 191.0 128 71.9
SGA_v2.0_scaffold23G10152 Striga asiatica HOM05D006224 ORTHO05D007691 5.5e-47 191.0 129 66.7
ClCG00G002210 Citrullus lanatus HOM05D006224 ORTHO05D007691 7.2e-47 190.7 127 68.5
ClCG06G010410 Citrullus lanatus HOM05D006224 ORTHO05D007691 7.2e-47 190.7 127 68.5
ECA236G3755 Erigeron canadensis HOM05D006224 ORTHO05D007691 7.2e-47 190.7 129 72.9
Manes.16G071100 Manihot esculenta HOM05D006224 ORTHO05D007691 7.2e-47 190.7 127 70.9
arahy.Tifrunner.gnm1.ann1.X15ZNM Arachis hypogaea HOM05D006224 ORTHO05D007691 1.2e-46 189.9 129 69.0
SalBow1G0968 Salvia bowleyana HOM05D006224 ORTHO05D007691 1.2e-46 189.9 129 67.4
vmacro06195 Vaccinium macrocarpon HOM05D006224 ORTHO05D007691 1.6e-46 189.5 144 66.0
Glyma.09G187600 Glycine max HOM05D006224 ORTHO05D007691 2.1e-46 189.1 129 69.8
Glyma.18G076000 Glycine max HOM05D006224 ORTHO05D007691 2.7e-46 188.7 129 69.8
Nitab4.5_0013433g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 2.7e-46 188.7 130 71.5
GSVIVG01015431001 Vitis vinifera HOM05D006224 ORTHO05D007691 2.7e-46 188.7 127 68.5
TPR.G31453 Trifolium pratense HOM05D006224 ORTHO05D007691 3.6e-46 188.3 129 69.8
CsaV3_1G030820 Cucumis sativus L. HOM05D006224 ORTHO05D007691 4.7e-46 188.0 127 69.3
Sopen07g017160 Solanum pennellii HOM05D006224 ORTHO05D007691 4.7e-46 188.0 129 69.0
Ca_25513_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 6.1e-46 187.6 129 69.0
Ca_30117_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 6.1e-46 187.6 129 69.0
MELO3C025318.2 Cucumis melo HOM05D006224 ORTHO05D007691 6.1e-46 187.6 127 68.5
Phvul.004G160700 Phaseolus vulgaris HOM05D006224 ORTHO05D007691 6.1e-46 187.6 129 69.0
Aqoxy5G03788 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 8.0e-46 187.2 125 68.8
Solyc07g009170.4 Solanum lycopersicum HOM05D006224 ORTHO05D007691 1.0e-45 186.8 129 68.2
Nitab4.5_0002361g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 2.3e-45 185.7 130 70.8
CAN.G929.19 Capsicum annuum HOM05D006224 ORTHO05D007691 3.0e-45 185.3 125 70.4
Sed0009228 Sechium edule HOM05D006224 ORTHO05D007691 3.0e-45 185.3 127 66.9
PGSC0003DMG400024204 Solanum tuberosum HOM05D006224 ORTHO05D007691 4.0e-45 184.9 129 68.2
ATR0037G051 Amborella trichopoda HOM05D006224 ORTHO05D007691 5.2e-45 184.5 129 65.1
Haze_25683 Corylus avellana HOM05D006224 ORTHO05D007691 5.2e-45 184.5 149 62.4
TWI34G0303 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 5.2e-45 184.5 129 69.8
TWI34G1467 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 6.7e-45 184.1 129 66.7
Potri.006G157700 Populus trichocarpa HOM05D006224 ORTHO05D007691 3.3e-44 181.8 129 67.4
Duzib187G0885 Durio zibethinus HOM05D006224 ORTHO05D007691 5.7e-44 181.0 128 68.8
ClCG06G010400 Citrullus lanatus HOM05D006224 ORTHO05D007691 9.7e-44 180.3 127 66.1
Zm00001eb309830 Zea mays HOM05D006224 ORTHO05D007691 1.3e-43 179.9 124 65.3
Psat1g037920 Pisum sativum HOM05D006224 ORTHO05D007691 1.7e-43 179.5 129 68.2
Potri.006G157800 Populus trichocarpa HOM05D006224 ORTHO05D007691 1.7e-43 179.5 129 65.9
Rhsim03G0244800 Rhododendron simsii HOM05D006224 ORTHO05D007691 2.8e-43 178.7 182 53.3
Sc08g0007140 Simmondsia chinensis HOM05D006224 ORTHO05D007691 3.7e-43 178.3 106 80.2
CDE04G0176 Ceratophyllum demersum HOM05D006224 ORTHO05D007691 6.3e-43 177.6 124 65.3
FAN28G2414 Fragaria x ananassa HOM05D006224 ORTHO05D007691 2.7e-41 172.2 107 74.8
CSS0033373 Camellia sinensis var. sinensis HOM05D006224 ORTHO05D007691 4.5e-41 171.4 129 68.2
Aqoxy5G03790 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 2.2e-40 169.1 129 61.2
Oeu060631.1 Olea europaea HOM05D006224 ORTHO05D007691 3.8e-40 168.3 107 73.8
EL10Ac8g18541 Beta vulgaris HOM05D006224 ORTHO05D007691 4.2e-39 164.9 129 62.8
Pp3c12_9090 Physcomitrium patens HOM05D006224 ORTHO05D007691 9.4e-39 163.7 127 59.8
Mapoly0084s0007 Marchantia polymorpha HOM05D006224 ORTHO05D007691 6.1e-38 161.0 129 58.1
BraA10t44095Z Brassica rapa HOM05D006224 ORTHO05D007691 1.4e-37 159.8 82 92.7
ClCG00G002580 Citrullus lanatus HOM05D006224 ORTHO05D007691 1.4e-37 159.8 111 66.7
Sabra06G0124600 Salix brachista HOM05D006224 ORTHO05D007691 6.8e-37 157.5 106 68.9
SMO347G0504 Selaginella moellendorffii HOM05D006224 ORTHO05D007691 2.0e-36 156.0 127 58.3
Cre13.g582201 Chlamydomonas reinhardtii HOM05D006224 ORTHO05D007691 2.6e-36 155.6 129 57.4
AagrBONN_evm.TU.Sc2ySwM_228.2202 Anthoceros agrestis HOM05D006224 ORTHO05D007691 8.6e-32 140.6 108 60.2
TPR.G31456 Trifolium pratense HOM05D006224 ORTHO05D007691 1.5e-31 139.8 110 62.7
MCO11G748 Micromonas commoda HOM05D006224 ORTHO05D007691 5.5e-31 137.9 123 51.2
unitig_748.g7155 Utricularia gibba HOM05D006224 ORTHO05D007691 1.2e-30 136.7 85 74.1
Ah.09g227190 Amaranthus hybridus HOM05D006224 ORTHO05D007691 1.6e-30 136.3 89 74.2
HanXRQChr05g0139161 Helianthus annuus HOM05D006224 ORTHO05D007691 8.0e-30 134.0 108 63.9
PRCOL_00004258 Prasinoderma coloniale HOM05D006224 ORTHO05D007691 2.3e-24 115.9 132 47.7
Pp3c3_27400 Physcomitrium patens HOM05D006224 ORTHO05D007691 5.6e-23 111.3 123 41.5
Pp3c6_16000 Physcomitrium patens HOM05D006224 ORTHO05D007691 1.2e-22 110.2 126 41.3
Peaxi162Scf00560g00615 Petunia axillaris HOM05D006224 ORTHO05D007691 1.5e-20 103.2 69 66.7
Lj7A644T17 Lonicera japonica HOM05D006224 ORTHO05D007691 5.4e-18 94.7 74 63.5
Cfa025487 Carpinus fangiana HOM05D006224 ORTHO05D007691 1.1e-10 70.5 133 33.8
vmacro11393 Vaccinium macrocarpon HOM05D003441 ORTHO05D004516 2.0e-09 66.2 42 69.0


User provided reference genes

Program Settings