Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR192210 Cardamine hirsuta HOM05D005537 ORTHO05D006776 2.9e-291 1004.6 530 100.0
AT5G20600 Arabidopsis thaliana HOM05D005537 ORTHO05D006776 1.6e-241 839.3 538 84.6
Thhalv10013208m.g Eutrema salsugineum HOM05D005537 ORTHO05D006776 1.0e-240 836.6 538 83.8
Carub.0006s1893 Capsella rubella HOM05D005537 ORTHO05D006776 6.2e-238 827.4 534 84.5
AL6G32140 Arabidopsis lyrata HOM05D005537 ORTHO05D006776 9.0e-237 823.5 538 82.7
Sp6g23880 Schrenkiella parvula HOM05D005537 ORTHO05D006776 3.3e-231 805.1 538 81.8
BolC9t58429H Brassica oleracea HOM05D005537 ORTHO05D006776 2.7e-217 758.8 529 76.4
C09p55630 Brassica napus HOM05D005537 ORTHO05D006776 7.9e-217 757.3 530 76.4
BcaC04g19447 Brassica carinata HOM05D005537 ORTHO05D006776 3.0e-216 755.4 530 75.8
BcaB08g36512 Brassica carinata HOM05D005537 ORTHO05D006776 2.1e-209 732.6 545 75.4
A10p19410 Brassica napus HOM05D005537 ORTHO05D006776 1.5e-207 726.5 527 74.6
BraA10t44018Z Brassica rapa HOM05D005537 ORTHO05D006776 5.7e-207 724.5 527 74.4
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 1.1e-194 683.7 531 70.1
Aa31LG1G14080 Aethionema arabicum HOM05D005537 ORTHO05D006776 5.2e-192 674.9 541 71.0
THA.LOC104799619 Tarenaya hassleriana HOM05D005537 ORTHO05D006776 2.2e-174 616.3 523 63.7
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 5.4e-165 585.1 520 64.6
A03p10160 Brassica napus HOM05D005537 ORTHO05D006776 1.2e-161 573.9 474 67.3
COL.COLO4_28459 Corchorus olitorius HOM05D005537 ORTHO05D006776 9.9e-135 484.6 523 50.5
Thecc.08G084500 Theobroma cacao HOM05D005537 ORTHO05D006776 4.9e-134 482.3 554 49.8
MD16G1242600 Malus domestica HOM05D005537 ORTHO05D006776 3.2e-133 479.6 533 50.3
MD13G1237200 Malus domestica HOM05D005537 ORTHO05D006776 2.7e-132 476.5 532 50.0
Manes.02G080100 Manihot esculenta HOM05D005537 ORTHO05D006776 2.7e-132 476.5 543 51.4
Gorai.002G136300 Gossypium raimondii HOM05D005537 ORTHO05D006776 3.5e-132 476.1 551 49.0
Prupe.1G069700 Prunus persica HOM05D005537 ORTHO05D006776 4.6e-132 475.7 537 49.9
Duzib093G2104 Durio zibethinus HOM05D005537 ORTHO05D006776 7.9e-132 474.9 526 50.4
VMungo1215G0900 Vigna mungo HOM05D005537 ORTHO05D006776 1.0e-131 474.6 533 51.6
Gohir.D06G023000 Gossypium hirsutum HOM05D005537 ORTHO05D006776 3.9e-131 472.6 544 49.4
CANSAT01G2612 Cannabis sativa HOM05D005537 ORTHO05D006776 1.1e-130 471.1 555 49.0
Gorai.010G027600 Gossypium raimondii HOM05D005537 ORTHO05D006776 1.1e-130 471.1 544 49.4
Gohir.A06G025900 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.9e-130 470.3 544 49.4
Cfa013489 Carpinus fangiana HOM05D005537 ORTHO05D006776 4.3e-130 469.2 559 48.1
Duzib041G0776 Durio zibethinus HOM05D005537 ORTHO05D006776 5.6e-130 468.8 524 50.0
ClCG11G011540 Citrullus lanatus HOM05D005537 ORTHO05D006776 2.1e-129 466.8 553 49.2
Ca_21044_v3 Cicer arietinum L. HOM05D005537 ORTHO05D006776 6.2e-129 465.3 519 50.5
Dinv25489 Davidia involucrata HOM05D005537 ORTHO05D006776 1.1e-128 464.5 556 47.7
Haze_22074 Corylus avellana HOM05D005537 ORTHO05D006776 1.8e-128 463.8 554 48.6
Glyma.13G103200 Glycine max HOM05D005537 ORTHO05D006776 1.2e-127 461.1 527 50.9
TPR.G37121 Trifolium pratense HOM05D005537 ORTHO05D006776 1.5e-127 460.7 541 49.5
CSS0045027 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 2.0e-127 460.3 532 49.1
BcaB01g04778 Brassica carinata HOM05D005537 ORTHO05D006776 2.6e-127 459.9 503 54.3
Ciclev10010385m.g Citrus clementina HOM05D005537 ORTHO05D006776 4.5e-127 459.1 558 46.4
CSS0042006 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 9.9e-127 458.0 532 48.9
Lju50A4T51 Lonicera japonica HOM05D005537 ORTHO05D006776 1.3e-126 457.6 545 49.9
Atru.chr2.2727 Acer truncatum HOM05D005537 ORTHO05D006776 2.2e-126 456.8 547 50.1
MELO3C003946.2 Cucumis melo HOM05D005537 ORTHO05D006776 2.2e-126 456.8 560 47.9
FAN17G0445 Fragaria x ananassa HOM05D005537 ORTHO05D006776 4.9e-126 455.7 533 47.5
arahy.Tifrunner.gnm1.ann1.W452X0 Arachis hypogaea HOM05D005537 ORTHO05D006776 1.4e-125 454.1 538 48.7
Medtr4g133100 Medicago truncatula HOM05D005537 ORTHO05D006776 5.5e-125 452.2 543 46.4
FvH4_4g06690 Fragaria vesca HOM05D005537 ORTHO05D006776 7.1e-125 451.8 532 47.6
FAN07G2345 Fragaria x ananassa HOM05D005537 ORTHO05D006776 7.1e-125 451.8 542 46.3
FAN12G0761 Fragaria x ananassa HOM05D005537 ORTHO05D006776 7.1e-125 451.8 532 47.4
arahy.Tifrunner.gnm1.ann1.HQKU7C Arachis hypogaea HOM05D005537 ORTHO05D006776 1.2e-124 451.1 545 49.0
FAN22G0220 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.2e-124 451.1 533 47.8
Lalb_Chr13g0299751 Lupinus albus HOM05D005537 ORTHO05D006776 1.0e-123 448.0 539 49.7
CiPaw.07G200800 Carya illinoinensis HOM05D005537 ORTHO05D006776 1.8e-123 447.2 557 46.9
Gohir.A01G123800 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.8e-123 447.2 522 48.9
vmacro19325 Vaccinium macrocarpon HOM05D005537 ORTHO05D006776 3.9e-123 446.0 526 48.3
Psat4g004960 Pisum sativum HOM05D005537 ORTHO05D006776 6.7e-123 445.3 538 47.8
TWI63G1753 Tripterygium wilfordii HOM05D005537 ORTHO05D006776 2.1e-121 440.3 596 44.6
Rhsim08G0162000 Rhododendron simsii HOM05D005537 ORTHO05D006776 4.8e-121 439.1 547 47.0
PGR044G0610 Punica granatum HOM05D005537 ORTHO05D006776 8.2e-121 438.3 529 48.8
RhsimUnG0132200 Rhododendron simsii HOM05D005537 ORTHO05D006776 1.1e-120 438.0 547 47.0
Potri.012G036500 Populus trichocarpa HOM05D005537 ORTHO05D006776 1.4e-120 437.6 562 46.8
Sed0009431 Sechium edule HOM05D005537 ORTHO05D006776 6.9e-120 435.3 550 46.5
QL11p009893 Quercus lobata HOM05D005537 ORTHO05D006776 1.0e-118 431.4 568 44.9
Cpa.g.sc115.49 Carica papaya HOM05D005537 ORTHO05D006776 1.3e-118 431.0 472 51.3
Sabra15G0023400 Salix brachista HOM05D005537 ORTHO05D006776 2.9e-118 429.9 559 46.7
TAR624G0592 Trochodendron aralioides HOM05D005537 ORTHO05D006776 3.8e-118 429.5 574 46.3
Sabra12G0025000 Salix brachista HOM05D005537 ORTHO05D006776 1.9e-117 427.2 560 47.3
Sed0014380 Sechium edule HOM05D005537 ORTHO05D006776 5.5e-117 425.6 557 44.2
Lj2g0020928 Lotus japonicus HOM05D005537 ORTHO05D006776 6.7e-115 418.7 553 45.0
Lsat_1_v5_gn_6_25660 Lactuca sativa HOM05D005537 ORTHO05D006776 4.1e-112 409.5 527 46.5
Aqoxy5G04373 Aquilegia oxysepala HOM05D005537 ORTHO05D006776 1.2e-111 407.9 581 43.5
Eucgr.C02216 Eucalyptus grandis HOM05D005537 ORTHO05D006776 2.9e-110 403.3 559 45.6
Gohir.D01G111500 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.9e-109 400.6 440 49.8
ECA233G0023 Erigeron canadensis HOM05D005537 ORTHO05D006776 4.2e-109 399.4 539 46.2
Sc18g0003000 Simmondsia chinensis HOM05D005537 ORTHO05D006776 2.7e-108 396.7 559 43.8
HanXRQChr13g0401171 Helianthus annuus HOM05D005537 ORTHO05D006776 1.0e-107 394.8 534 45.1
SGA_v2.0_scaffold17G07935 Striga asiatica HOM05D005537 ORTHO05D006776 7.4e-106 388.7 558 42.3
CDE05G3054 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 1.8e-104 384.0 555 42.9
Cc06_g13120 Coffea canephora HOM05D005537 ORTHO05D006776 1.8e-104 384.0 571 43.1
DCAR_017989 Daucus carota HOM05D005537 ORTHO05D006776 2.4e-104 383.6 600 38.5
CDE05G2659 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 1.2e-103 381.3 543 43.1
SHI03078 Sapria himalayana HOM05D005537 ORTHO05D006776 2.0e-103 380.6 558 42.1
SGA_v2.0_scaffold12G06075 Striga asiatica HOM05D005537 ORTHO05D006776 3.4e-103 379.8 577 41.6
Peaxi162Scf00231g10125 Petunia axillaris HOM05D005537 ORTHO05D006776 4.5e-103 379.4 572 41.1
AUR62021325 Chenopodium quinoa HOM05D005537 ORTHO05D006776 1.0e-102 378.3 519 43.7
Ah.09g230210 Amaranthus hybridus HOM05D005537 ORTHO05D006776 1.3e-102 377.9 557 42.9
Sopen07g006800 Solanum pennellii HOM05D005537 ORTHO05D006776 1.3e-102 377.9 597 40.0
MSTRG.26216 Avicennia marina HOM05D005537 ORTHO05D006776 3.8e-102 376.3 562 42.7
Solyc07g017940.1 Solanum lycopersicum HOM05D005537 ORTHO05D006776 2.5e-101 373.6 592 40.4
PGSC0003DMG400004098 Solanum tuberosum HOM05D005537 ORTHO05D006776 3.2e-101 373.2 598 39.6
Migut.K00238 Erythranthe guttata HOM05D005537 ORTHO05D006776 9.4e-101 371.7 553 42.0
Nitab4.5_0000055g0260 Nicotiana tabacum HOM05D005537 ORTHO05D006776 2.7e-100 370.2 583 40.3
PSO063G7542 Papaver somniferum HOM05D005537 ORTHO05D006776 5.1e-99 365.9 552 40.6
Nitab4.5_0004772g0040 Nicotiana tabacum HOM05D005537 ORTHO05D006776 8.8e-99 365.2 583 40.3
RcHm_v2.0_Chr4g0398601 Rosa chinensis HOM05D005537 ORTHO05D006776 8.8e-99 365.2 307 57.3
Nn8g40421 Nelumbo nucifera HOM05D005537 ORTHO05D006776 9.7e-98 361.7 564 40.1
PSO170G0047 Papaver somniferum HOM05D005537 ORTHO05D006776 8.2e-97 358.6 560 39.5
CsaV3_2G008990 Cucumis sativus L. HOM05D005537 ORTHO05D006776 3.1e-96 356.7 331 55.9
unitig_899.g15473 Utricularia gibba HOM05D005537 ORTHO05D006776 5.3e-96 355.9 540 40.7
Psat2g005880 Pisum sativum HOM05D005537 ORTHO05D006776 3.4e-95 353.2 515 43.7
BraA03t10326Z Brassica rapa HOM05D005537 ORTHO05D006776 5.9e-95 352.4 229 75.5
CiPaw.08G029800 Carya illinoinensis HOM05D005537 ORTHO05D006776 2.2e-94 350.5 481 43.7
CAN.G1186.23 Capsicum annuum HOM05D005537 ORTHO05D006776 1.1e-93 348.2 592 39.7
MBI14_g19455_MAGBIO Magnolia biondii HOM05D005537 ORTHO05D006776 2.5e-93 347.1 508 43.9
TPR.G1254 Trifolium pratense HOM05D005537 ORTHO05D006776 1.8e-91 340.9 514 41.4
Lju432C4G13 Lonicera japonica HOM05D005537 ORTHO05D006776 9.7e-90 335.1 436 45.2
Actinidia01575 Actinidia chinensis HOM05D005537 ORTHO05D006776 5.3e-88 329.3 564 40.4
HPP92_018575 Vanilla planifolia HOM05D005537 ORTHO05D006776 2.9e-86 323.6 586 36.5
Psat2g005840 Pisum sativum HOM05D005537 ORTHO05D006776 3.6e-84 316.6 493 41.8
GSVIVG01029258001 Vitis vinifera HOM05D008207 ORTHO05D010373 7.5e-82 308.9 509 39.1
Zm00001eb067650 Zea mays HOM05D005537 ORTHO05D006776 6.3e-81 305.8 535 37.6
Os04g0658600 Oryza sativa ssp. japonica HOM05D005537 ORTHO05D006776 1.1e-80 305.1 544 36.9
SEGI_41129 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 1.7e-78 297.7 639 32.7
ATR0580G047 Amborella trichopoda HOM05D005537 ORTHO05D006776 2.9e-78 297.0 701 33.0
AUR62033242 Chenopodium quinoa HOM05D008207 ORTHO05D010373 8.6e-70 268.9 408 43.4
SEGI_27163 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 7.2e-69 265.8 524 33.8
Mapoly0006s0254 Marchantia polymorpha HOM05D005537 ORTHO05D006776 8.0e-60 235.7 618 29.6
unitig_746.g26559 Utricularia gibba HOM05D005537 ORTHO05D006776 6.8e-59 232.6 269 46.1
SMO012G0033 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 1.6e-55 221.5 530 30.0
Pp3c12_970 Physcomitrium patens HOM05D005537 ORTHO05D006776 1.7e-54 218.0 679 28.4
Zm00001eb432550 Zea mays HOM05D005537 ORTHO05D006776 5.0e-54 216.5 488 32.0
Pp3c17_1280 Physcomitrium patens HOM05D005537 ORTHO05D006776 2.7e-47 194.1 387 31.5
AagrBONN_evm.TU.Sc2ySwM_228.2028 Anthoceros agrestis HOM05D005537 ORTHO05D006776 7.8e-47 192.6 641 26.8
EL10Ac8g18309 Beta vulgaris HOM05D005537 ORTHO05D006776 1.6e-44 184.9 416 35.1
SMO172G0175 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 3.6e-44 183.7 447 29.8
MELO3C020712.2 Cucumis melo HOM05D005537 ORTHO05D006776 2.2e-41 174.5 179 49.2
SEGI_03037 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 1.9e-37 161.4 554 27.3
Cc00_g32040 Coffea canephora HOM05D005537 ORTHO05D006776 2.0e-34 151.4 141 53.2
CBR_g32208 Chara braunii HOM05D005537 ORTHO05D006776 5.4e-32 143.3 286 31.5
Cre01.g019200 Chlamydomonas reinhardtii HOM05D005537 ORTHO05D006776 3.5e-31 140.6 281 34.5
FvH4_5g34681 Fragaria vesca HOM05D005537 ORTHO05D006776 4.7e-28 130.2 134 52.2
Glyma.17G055832 Glycine max HOM05D005537 ORTHO05D006776 7.6e-26 122.9 152 49.3
PRCOL_00002161 Prasinoderma coloniale HOM05D005537 ORTHO05D006776 6.4e-25 119.8 298 30.2
Oeu009853.2 Olea europaea HOM05D005537 ORTHO05D006776 2.7e-23 114.4 170 41.2
FvH4_2g25020 Fragaria vesca HOM05D005537 ORTHO05D006776 1.6e-20 105.1 81 58.0
FAN24G0683 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.6e-20 105.1 81 58.0
MCO12G389 Micromonas commoda HOM05D005537 ORTHO05D006776 5.8e-18 96.7 165 35.8
unitig_746.g26560 Utricularia gibba HOM05D005537 ORTHO05D006776 9.6e-13 79.3 132 40.2
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 5.5e-08 63.5 104 36.5
Cfa026542 Carpinus fangiana HOM05D005537 ORTHO05D124841 1.8e-06 58.5 116 35.3


User provided reference genes

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