Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR174670 Cardamine hirsuta HOM05D004452 ORTHO05D005358 3.7e-27 124.0 58 100.0
CARHR036370 Cardamine hirsuta HOM05D004452 ORTHO05D005358 8.3e-19 96.3 56 78.6
BcaB07g33871 Brassica carinata HOM05D004452 ORTHO05D005358 3.9e-16 87.4 58 74.1
AT1G45233 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 2.5e-15 84.7 58 70.7
A10p06900 Brassica napus HOM05D004452 ORTHO05D005358 5.6e-15 83.6 58 72.4
BraA10t42942Z Brassica rapa HOM05D004452 ORTHO05D005358 9.5e-15 82.8 58 70.7
AL1G52910 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 1.6e-14 82.0 58 67.2
CSS0026728 Camellia sinensis var. sinensis HOM05D004452 ORTHO05D005358 1.6e-14 82.0 54 70.4
CiPaw.15G055600 Carya illinoinensis HOM05D004452 ORTHO05D005358 1.6e-14 82.0 54 72.2
Actinidia23285 Actinidia chinensis HOM05D004452 ORTHO05D005358 2.8e-14 81.3 54 70.4
Cc10_g04060 Coffea canephora HOM05D004452 ORTHO05D005358 3.6e-14 80.9 54 66.7
Prupe.1G434400 Prunus persica HOM05D004452 ORTHO05D005358 3.6e-14 80.9 54 70.4
TWI56G0235 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 3.6e-14 80.9 58 67.2
Cfa018088 Carpinus fangiana HOM05D004452 ORTHO05D005358 4.7e-14 80.5 54 72.2
CiPaw.16G042900 Carya illinoinensis HOM05D004452 ORTHO05D005358 4.7e-14 80.5 54 72.2
Rhsim06G0050800 Rhododendron simsii HOM05D004452 ORTHO05D005358 4.7e-14 80.5 54 70.4
AT5G42920 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 6.2e-14 80.1 58 69.0
Dinv35952 Davidia involucrata HOM05D004452 ORTHO05D005358 6.2e-14 80.1 54 70.4
Dinv39307 Davidia involucrata HOM05D004452 ORTHO05D005358 6.2e-14 80.1 54 68.5
Thhalv10011479m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 8.1e-14 79.7 58 67.2
Lsat_1_v5_gn_1_21181 Lactuca sativa HOM05D004452 ORTHO05D005358 8.1e-14 79.7 54 68.5
MD08G1099300 Malus domestica HOM05D004452 ORTHO05D005358 8.1e-14 79.7 54 70.4
GSVIVG01009484001 Vitis vinifera HOM05D004452 ORTHO05D005358 8.1e-14 79.7 54 70.4
CARHR181170 Cardamine hirsuta HOM05D004452 ORTHO05D005358 1.1e-13 79.3 58 67.2
FAN15G1326 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.1e-13 79.3 54 70.4
FAN20G1510 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.1e-13 79.3 54 70.4
FAN24G0195 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.1e-13 79.3 54 70.4
FAN27G2914 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.1e-13 79.3 54 70.4
AL8G17930 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 1.4e-13 79.0 58 67.2
Carub.0008s0587 Capsella rubella HOM05D004452 ORTHO05D005358 1.4e-13 79.0 58 67.2
DCAR_019448 Daucus carota HOM05D004452 ORTHO05D005358 1.4e-13 79.0 54 68.5
AUR62041892 Chenopodium quinoa HOM05D004452 ORTHO05D005358 1.8e-13 78.6 54 68.5
Manes.18G038000 Manihot esculenta HOM05D004452 ORTHO05D005358 2.3e-13 78.2 54 66.7
RcHm_v2.0_Chr6g0308041 Rosa chinensis HOM05D004452 ORTHO05D005358 2.3e-13 78.2 54 66.7
Sopen04g032430 Solanum pennellii HOM05D004452 ORTHO05D005358 2.3e-13 78.2 54 66.7
Thhalv10003147m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 3.1e-13 77.8 58 67.2
Nn7g37344 Nelumbo nucifera HOM05D004452 ORTHO05D005358 3.1e-13 77.8 54 68.5
Thecc.08G005800 Theobroma cacao HOM05D004452 ORTHO05D005358 3.1e-13 77.8 54 68.5
Atru.chr13.704 Acer truncatum HOM05D004452 ORTHO05D005358 4.0e-13 77.4 54 68.5
FvH4_2g34320 Fragaria vesca HOM05D004452 ORTHO05D005358 4.0e-13 77.4 54 68.5
HanXRQChr02g0039511 Helianthus annuus HOM05D004452 ORTHO05D005358 4.0e-13 77.4 54 68.5
THA.LOC104822853 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 4.0e-13 77.4 58 65.5
BcaC06g31738 Brassica carinata HOM05D004452 ORTHO05D005358 5.2e-13 77.0 58 65.5
Sabra14G0019200 Salix brachista HOM05D004452 ORTHO05D005358 5.2e-13 77.0 58 63.8
ECA247G0253 Erigeron canadensis HOM05D004452 ORTHO05D005358 6.8e-13 76.6 54 68.5
CAN.G1030.10 Capsicum annuum HOM05D004452 ORTHO05D005358 8.9e-13 76.3 58 62.1
Lj4A59T44 Lonicera japonica HOM05D004452 ORTHO05D005358 8.9e-13 76.3 54 66.7
Potri.014G028100 Populus trichocarpa HOM05D004452 ORTHO05D005358 8.9e-13 76.3 58 63.8
TWI36G0852 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 8.9e-13 76.3 58 63.8
arahy.Tifrunner.gnm1.ann1.Y5ZCTQ Arachis hypogaea HOM05D004452 ORTHO05D005358 1.2e-12 75.9 54 63.0
BcaC02g10792 Brassica carinata HOM05D004452 ORTHO05D005358 1.2e-12 75.9 58 65.5
C04p25060 Brassica napus HOM05D004452 ORTHO05D005358 1.2e-12 75.9 58 65.5
BolC4t24007H Brassica oleracea HOM05D004452 ORTHO05D005358 1.2e-12 75.9 58 65.5
Duzib093G1704 Durio zibethinus HOM05D004452 ORTHO05D005358 1.2e-12 75.9 54 66.7
MD15G1081700 Malus domestica HOM05D004452 ORTHO05D005358 1.2e-12 75.9 54 66.7
Solyc04g078830.3 Solanum lycopersicum HOM05D004452 ORTHO05D005358 1.2e-12 75.9 54 64.8
arahy.Tifrunner.gnm1.ann1.UAD7VL Arachis hypogaea HOM05D004452 ORTHO05D005358 1.5e-12 75.5 54 63.0
Nn5g30286 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.5e-12 75.5 58 62.1
PGSC0003DMG400007967 Solanum tuberosum HOM05D004452 ORTHO05D005358 1.5e-12 75.5 54 64.8
MSTRG.25087 Avicennia marina HOM05D004452 ORTHO05D005358 2.0e-12 75.1 54 61.1
AUR62038817 Chenopodium quinoa HOM05D004452 ORTHO05D005358 2.0e-12 75.1 54 64.8
COL.COLO4_26520 Corchorus olitorius HOM05D004452 ORTHO05D005358 2.0e-12 75.1 54 64.8
MBI06_g02568_MAGBIO Magnolia biondii HOM05D004452 ORTHO05D005358 2.0e-12 75.1 54 64.8
Sp1g34090 Schrenkiella parvula HOM05D004452 ORTHO05D005358 2.0e-12 75.1 58 65.5
A06p48170 Brassica napus HOM05D004452 ORTHO05D005358 2.6e-12 74.7 58 63.8
Lalb_Chr11g0062611 Lupinus albus HOM05D004452 ORTHO05D005358 2.6e-12 74.7 54 64.8
Peaxi162Scf00252g00221 Petunia axillaris HOM05D004452 ORTHO05D005358 2.6e-12 74.7 54 61.1
PGR031G1897 Punica granatum HOM05D004452 ORTHO05D005358 2.6e-12 74.7 54 64.8
QL02p004676 Quercus lobata HOM05D004452 ORTHO05D005358 2.6e-12 74.7 54 66.7
Sp2g07660 Schrenkiella parvula HOM05D004452 ORTHO05D005358 2.6e-12 74.7 56 67.9
Aqoxy5G01224 Aquilegia oxysepala HOM05D004452 ORTHO05D005358 3.4e-12 74.3 54 64.8
Gohir.D05G206300 Gossypium hirsutum HOM05D004452 ORTHO05D005358 3.4e-12 74.3 54 66.7
BraA06t27686Z Brassica rapa HOM05D004452 ORTHO05D005358 5.8e-12 73.6 58 63.8
Carub.0001s3568 Capsella rubella HOM05D004452 ORTHO05D005358 5.8e-12 73.6 58 65.5
Lalb_Chr08g0245391 Lupinus albus HOM05D004452 ORTHO05D005358 5.8e-12 73.6 54 63.0
ClCG05G019920 Citrullus lanatus HOM05D004452 ORTHO05D005358 9.8e-12 72.8 54 64.8
Gohir.A05G203100 Gossypium hirsutum HOM05D004452 ORTHO05D005358 9.8e-12 72.8 54 64.8
Hma1.2p1_2046F.1_g312410 Hydrangea macrophylla HOM05D004452 ORTHO05D005358 9.8e-12 72.8 54 66.7
Lj1g0004160 Lotus japonicus HOM05D004452 ORTHO05D005358 9.8e-12 72.8 54 61.1
TAR381G1434 Trochodendron aralioides HOM05D004452 ORTHO05D005358 9.8e-12 72.8 54 64.8
VMungo1309G1308 Vigna mungo HOM05D004452 ORTHO05D005358 9.8e-12 72.8 54 61.1
CANSAT11G1000 Cannabis sativa HOM05D004452 ORTHO05D005358 1.3e-11 72.4 52 67.3
CsaV3_4G034360 Cucumis sativus L. HOM05D004452 ORTHO05D005358 1.3e-11 72.4 54 64.8
vmacro21515 Vaccinium macrocarpon HOM05D004452 ORTHO05D005358 1.3e-11 72.4 51 68.6
Oeu023860.1 Olea europaea HOM05D004452 ORTHO05D005358 1.7e-11 72.0 54 59.3
arahy.Tifrunner.gnm1.ann1.IXK305 Arachis hypogaea HOM05D004452 ORTHO05D005358 2.2e-11 71.6 54 57.4
arahy.Tifrunner.gnm1.ann1.VB8FSW Arachis hypogaea HOM05D004452 ORTHO05D005358 2.2e-11 71.6 54 57.4
Gorai.009G212700 Gossypium raimondii HOM05D004452 ORTHO05D005358 2.2e-11 71.6 54 64.8
Phvul.009G065600 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 2.2e-11 71.6 54 61.1
Hund23866 Selenicereus undatus HOM05D004452 ORTHO05D005358 2.2e-11 71.6 54 59.3
TPR.G24198 Trifolium pratense HOM05D004452 ORTHO05D005358 2.2e-11 71.6 54 59.3
ATR1126G044 Amborella trichopoda HOM05D004452 ORTHO05D005358 2.9e-11 71.2 58 58.6
Ciclev10000290m.g Citrus clementina HOM05D004452 ORTHO05D005358 2.9e-11 71.2 54 63.0
Glyma.06G040600 Glycine max HOM05D004452 ORTHO05D005358 3.7e-11 70.9 54 61.1
Nitab4.5_0002760g0030 Nicotiana tabacum HOM05D004452 ORTHO05D005358 3.7e-11 70.9 54 59.3
BcaC08g42910 Brassica carinata HOM05D004452 ORTHO05D005358 4.9e-11 70.5 58 63.8
C06p01470 Brassica napus HOM05D004452 ORTHO05D005358 4.9e-11 70.5 58 63.8
BolC6t35279H Brassica oleracea HOM05D004452 ORTHO05D005358 4.9e-11 70.5 58 63.8
MELO3C016756.2 Cucumis melo HOM05D004452 ORTHO05D005358 4.9e-11 70.5 54 63.0
Eucgr.F02336 Eucalyptus grandis HOM05D004452 ORTHO05D005358 4.9e-11 70.5 54 59.3
Sc02g0007190 Simmondsia chinensis HOM05D004452 ORTHO05D005358 6.4e-11 70.1 54 61.1
PSO170G2588 Papaver somniferum HOM05D004452 ORTHO05D005358 1.1e-10 69.3 58 58.6
Sed0026470 Sechium edule HOM05D004452 ORTHO05D005358 1.1e-10 69.3 54 61.1
Sc15g0006090 Simmondsia chinensis HOM05D004452 ORTHO05D005358 1.1e-10 69.3 54 59.3
EL10Ac1g01836 Beta vulgaris HOM05D004452 ORTHO05D005358 1.4e-10 68.9 52 63.5
SalBow8G0374 Salvia bowleyana HOM05D004452 ORTHO05D005358 1.4e-10 68.9 54 55.6
SalBow8G3632 Salvia bowleyana HOM05D004452 ORTHO05D005358 1.4e-10 68.9 54 55.6
Oeu043579.4 Olea europaea HOM05D004452 ORTHO05D005358 1.9e-10 68.6 54 55.6
Ca_15944_v3 Cicer arietinum L. HOM05D004452 ORTHO05D005358 3.2e-10 67.8 54 55.6
Glyma.04G039400 Glycine max HOM05D004452 ORTHO05D005358 3.2e-10 67.8 54 57.4
Medtr3g101790 Medicago truncatula HOM05D004452 ORTHO05D005358 3.2e-10 67.8 54 53.7
PSO210G0441 Papaver somniferum HOM05D004452 ORTHO05D005358 3.2e-10 67.8 58 56.9
THA.LOC104812571 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 3.2e-10 67.8 59 61.0
Glyma.17G241800 Glycine max HOM05D004452 ORTHO05D005358 4.1e-10 67.4 54 57.4
Nitab4.5_0000287g0200 Nicotiana tabacum HOM05D004452 ORTHO05D005358 4.1e-10 67.4 54 57.4
Psat5g042600 Pisum sativum HOM05D004452 ORTHO05D005358 4.1e-10 67.4 54 53.7
Sed0009272 Sechium edule HOM05D004452 ORTHO05D005358 4.1e-10 67.4 54 57.4
Migut.N02714 Erythranthe guttata HOM05D004452 ORTHO05D005358 5.4e-10 67.0 54 55.6
Aa31LG9G12980 Aethionema arabicum HOM05D004452 ORTHO05D005358 7.1e-10 66.6 59 55.9
CDE04G2017 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 7.1e-10 66.6 58 55.2
Glyma.14G083300 Glycine max HOM05D004452 ORTHO05D005358 9.2e-10 66.2 54 57.4
VMungo0647G1811 Vigna mungo HOM05D004452 ORTHO05D005358 1.2e-09 65.9 54 51.9
SEGI_30975 Sequoiadendron giganteum HOM05D004452 ORTHO05D005358 1.6e-09 65.5 54 57.4
CDE08G0013 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 2.1e-09 65.1 54 55.6
Aa31LG7G10550 Aethionema arabicum HOM05D004452 ORTHO05D005358 3.5e-09 64.3 51 64.7
MSTRG.24335 Avicennia marina HOM05D004452 ORTHO05D005358 7.8e-09 63.2 54 53.7
Zm00001eb255990 Zea mays HOM05D004452 ORTHO05D005358 1.3e-08 62.4 55 60.0
Aa31sc108G100 Aethionema arabicum HOM05D004452 ORTHO05D005358 3.0e-08 61.2 54 59.3
CANSAT11G0118 Cannabis sativa HOM05D004452 ORTHO05D005358 3.0e-08 61.2 52 61.5
Cpa.g.sc49.27 Carica papaya HOM05D004452 ORTHO05D005358 3.0e-08 61.2 54 59.3
Os02g0767100 Oryza sativa ssp. japonica HOM05D004452 ORTHO05D005358 3.0e-08 61.2 54 55.6
Phvul.001G022500 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 3.0e-08 61.2 54 51.9
SGA_v2.0_scaffold28G11777 Striga asiatica HOM05D004452 ORTHO05D005358 3.0e-08 61.2 54 50.0
Potri.002G125300 Populus trichocarpa HOM05D004452 ORTHO05D005358 1.1e-07 59.3 49 57.1
SHI08268 Sapria himalayana HOM05D004452 ORTHO05D005358 1.9e-07 58.5 58 50.0
HPP92_016717 Vanilla planifolia HOM05D004452 ORTHO05D005358 3.3e-07 57.8 58 50.0
SMO356G0003 Selaginella moellendorffii HOM05D004452 ORTHO05D005358 5.6e-07 57.0 58 48.3
unitig_749.g13678 Utricularia gibba HOM05D004452 ORTHO05D005358 6.2e-06 53.5 54 42.6


User provided reference genes

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