Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 2.4e-169 599.0 348 100.0
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 5.0e-143 511.5 352 86.6
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 1.2e-141 506.9 350 84.0
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 3.6e-141 505.4 352 86.1
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 2.6e-136 489.2 352 83.0
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 6.5e-135 484.6 352 82.7
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 1.9e-134 483.0 352 82.4
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 1.2e-133 480.3 352 81.0
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 2.0e-131 473.0 350 82.9
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 4.4e-131 471.9 356 82.0
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 9.7e-131 470.7 356 81.7
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 1.1e-129 467.2 355 81.7
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 1.1e-129 467.2 355 81.7
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 5.3e-129 464.9 354 81.9
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 4.5e-128 461.8 352 81.2
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 5.0e-119 431.8 348 74.4
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 7.2e-118 427.9 348 71.0
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 7.0e-113 411.4 352 75.0
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 3.6e-109 399.1 340 74.1
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 8.3e-106 387.9 342 64.6
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 4.4e-99 365.5 335 62.7
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 6.0e-96 355.1 339 61.4
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 3.3e-94 349.4 346 61.6
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 3.3e-94 349.4 320 61.9
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 4.3e-94 349.0 338 55.6
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 5.6e-94 348.6 322 59.9
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 1.2e-93 347.4 309 62.8
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 2.1e-93 346.7 312 64.7
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 2.1e-93 346.7 343 60.6
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 2.8e-93 346.3 340 61.2
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 1.1e-92 344.4 338 58.3
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 1.4e-92 344.0 339 60.8
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 1.4e-92 344.0 308 65.3
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 3.1e-92 342.8 335 58.2
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 3.1e-92 342.8 322 62.1
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 4.0e-92 342.4 340 56.2
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 2.6e-91 339.7 360 56.9
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 4.4e-91 339.0 341 55.4
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 5.8e-91 338.6 344 56.1
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 1.3e-90 337.4 335 59.1
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 2.2e-90 336.7 328 58.8
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 2.2e-90 336.7 363 60.6
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 3.7e-90 335.9 339 65.2
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 8.3e-90 334.7 298 59.7
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 1.1e-89 334.3 344 58.4
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 2.4e-89 333.2 343 57.4
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 4.1e-89 332.4 354 54.8
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 7.1e-89 331.6 324 63.0
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 9.2e-89 331.3 337 58.8
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 9.2e-89 331.3 317 63.1
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 1.6e-88 330.5 304 63.2
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 1.6e-88 330.5 334 59.9
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 2.1e-88 330.1 341 61.6
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 2.7e-88 329.7 318 59.4
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 3.9e-87 325.9 265 66.8
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 5.1e-87 325.5 311 54.7
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 8.6e-87 324.7 308 61.4
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 8.6e-87 324.7 317 58.0
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 1.5e-86 323.9 335 58.8
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 4.3e-86 322.4 295 62.4
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 4.3e-86 322.4 327 57.5
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 5.6e-86 322.0 232 70.3
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 5.6e-86 322.0 346 54.3
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 5.6e-86 322.0 291 64.9
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 5.6e-86 322.0 277 61.0
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 7.3e-86 321.6 338 55.0
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 9.5e-86 321.2 361 52.6
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.2e-85 320.9 266 71.1
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 1.2e-85 320.9 340 54.1
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 2.1e-85 320.1 230 70.4
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 2.1e-85 320.1 293 57.7
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 3.6e-85 319.3 269 62.5
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 6.2e-85 318.5 295 68.1
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 6.2e-85 318.5 332 51.8
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 8.9e-84 314.7 329 57.8
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 2.0e-83 313.5 318 57.2
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 1.7e-82 310.5 298 58.1
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 4.9e-82 308.9 258 60.5
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 6.4e-82 308.5 256 61.7
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 1.6e-80 303.9 294 63.3
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 6.0e-80 302.0 284 61.3
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 3.9e-79 299.3 314 58.6
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 3.9e-79 299.3 309 58.3
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 6.6e-79 298.5 314 60.5
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 6.6e-79 298.5 256 60.9
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 1.5e-78 297.4 255 59.6
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 1.9e-78 297.0 298 65.1
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 2.5e-78 296.6 303 64.0
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 5.6e-78 295.4 314 62.1
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 5.6e-78 295.4 314 62.1
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 4.7e-77 292.4 323 61.6
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 4.7e-77 292.4 314 61.8
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 1.8e-76 290.4 276 57.2
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 4.0e-76 289.3 366 51.9
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 4.0e-76 289.3 286 57.0
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 1.2e-75 287.7 297 59.3
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 1.5e-75 287.3 310 58.1
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 5.8e-75 285.4 357 49.9
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 7.6e-75 285.0 338 59.2
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 3.8e-74 282.7 302 52.0
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 1.1e-73 281.2 266 61.7
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 1.4e-73 280.8 257 59.9
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 1.9e-73 280.4 371 48.0
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 2.7e-72 276.6 328 56.4
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 1.0e-71 274.6 238 63.9
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 2.8e-69 266.5 319 51.7
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 1.3e-63 247.7 201 61.7
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 1.9e-62 243.8 254 57.9
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 1.4e-60 237.7 268 51.1
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 2.6e-59 233.4 233 51.5
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 2.9e-58 229.9 328 45.4
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 1.9e-57 227.3 289 52.6
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 7.9e-56 221.9 136 77.2
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 8.1e-53 211.8 271 42.1
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 6.5e-50 202.2 266 47.4
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 8.4e-50 201.8 303 40.6
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 6.3e-45 185.7 135 63.7
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 4.5e-43 179.5 140 67.1
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 2.2e-42 177.2 329 42.9
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 2.8e-37 160.2 304 33.6
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 1.5e-35 154.5 177 43.5
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 5.5e-33 146.0 99 71.7
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 7.2e-33 145.6 97 73.2
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 9.4e-33 145.2 264 35.6
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 5.7e-30 136.0 181 43.6
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-21 108.2 214 28.5
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 6.3e-21 105.9 198 30.8
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 1.1e-20 105.1 72 69.4
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 1.4e-20 104.8 156 53.2
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 1.1e-17 95.1 144 39.6
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 1.7e-13 81.3 187 28.9
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 1.6e-11 74.7 127 35.4
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 3.5e-11 73.6 192 26.6
MCO12G371 Micromonas commoda HOM05D005493 ORTHO05D049008 3.8e-10 70.1 233 24.5
unitig_37.g12179 Utricularia gibba HOM05D005493 ORTHO05D007154 5.5e-09 66.2 68 55.9
vmacro23227 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 5.5e-09 66.2 82 43.9
MCO11G471 Micromonas commoda HOM05D050729 ORTHO05D049153 2.7e-08 63.9 96 30.2


User provided reference genes

Program Settings