Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR162190 Cardamine hirsuta HOM05D007833 ORTHO05D009855 2.7e-26 121.3 64 100.0
AT3G52420 Arabidopsis thaliana HOM05D007833 ORTHO05D009855 2.9e-20 101.3 60 83.3
Sp5g09880 Schrenkiella parvula HOM05D007833 ORTHO05D009855 1.2e-18 95.9 64 75.0
AL5G33070 Arabidopsis lyrata HOM05D007833 ORTHO05D009855 1.6e-18 95.5 63 77.8
Carub.0005s1877 Capsella rubella HOM05D007833 ORTHO05D009855 5.9e-18 93.6 64 75.0
BcaC06g32911 Brassica carinata HOM05D007833 ORTHO05D009855 1.3e-17 92.4 64 75.0
C07p46950 Brassica napus HOM05D000938 ORTHO05D001451 3.0e-17 91.3 50 88.0
BolC7t45211H Brassica oleracea HOM05D000938 ORTHO05D001451 3.0e-17 91.3 50 88.0
BcaC06g33387 Brassica carinata HOM05D007833 ORTHO05D009855 8.6e-17 89.7 64 73.4
A03p48860 Brassica napus HOM05D000938 ORTHO05D001451 1.1e-16 89.4 50 86.0
BraA03t13987Z Brassica rapa HOM05D000938 ORTHO05D001451 1.1e-16 89.4 50 86.0
QL12p022146 Quercus lobata HOM05D007833 ORTHO05D009855 2.1e-15 85.1 59 69.5
Thhalv10010886m.g Eutrema salsugineum HOM05D007833 ORTHO05D009855 1.2e-13 79.3 45 84.4
COL.COLO4_09117 Corchorus olitorius HOM05D003232 ORTHO05D003584 5.8e-13 77.0 52 67.3
MD11G1287600 Malus domestica HOM05D007833 ORTHO05D009855 1.3e-12 75.9 60 61.7
CiPaw.07G092800 Carya illinoinensis HOM05D007833 ORTHO05D009855 1.7e-12 75.5 55 65.5
TWI59G0429 Tripterygium wilfordii HOM05D007833 ORTHO05D009855 1.7e-12 75.5 64 62.5
ClCG07G000180 Citrullus lanatus HOM05D007833 ORTHO05D009855 3.7e-12 74.3 49 71.4
Thecc.01G281600 Theobroma cacao HOM05D007833 ORTHO05D009855 3.7e-12 74.3 51 64.7
Gorai.004G081500 Gossypium raimondii HOM05D007833 ORTHO05D009855 4.9e-12 73.9 53 60.4
Gohir.A08G068400 Gossypium hirsutum HOM05D007833 ORTHO05D009855 6.4e-12 73.6 54 59.3
RcHm_v2.0_Chr6g0291241 Rosa chinensis HOM05D007833 ORTHO05D009855 6.4e-12 73.6 51 68.6
Gohir.D08G076800 Gossypium hirsutum HOM05D007833 ORTHO05D009855 8.3e-12 73.2 53 60.4
Nitab4.5_0001028g0100 Nicotiana tabacum HOM05D007833 ORTHO05D009855 8.3e-12 73.2 52 63.5
Haze_04727 Corylus avellana HOM05D001305 ORTHO05D007147 1.1e-11 72.8 50 66.0
Duzib133G1414 Durio zibethinus HOM05D007833 ORTHO05D009855 1.1e-11 72.8 51 62.7
Sed0020364 Sechium edule HOM05D007833 ORTHO05D009855 1.1e-11 72.8 62 58.1
Medtr7g094710 Medicago truncatula HOM05D007833 ORTHO05D009855 1.4e-11 72.4 57 66.7
Manes.01G208800 Manihot esculenta HOM05D007833 ORTHO05D009855 3.2e-11 71.2 48 68.8
Nitab4.5_0008797g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 3.2e-11 71.2 59 57.6
FAN20G1309 Fragaria x ananassa HOM05D007833 ORTHO05D009855 4.1e-11 70.9 59 61.0
MBI04_g33966_MAGBIO Magnolia biondii HOM05D007833 ORTHO05D009855 4.1e-11 70.9 54 61.1
Lsat_1_v5_gn_9_4081 Lactuca sativa HOM05D007833 ORTHO05D009855 7.0e-11 70.1 59 55.9
CAN.G1682.20 Capsicum annuum HOM05D007833 ORTHO05D009855 9.2e-11 69.7 64 53.1
Cfa006126 Carpinus fangiana HOM05D007833 ORTHO05D009855 9.2e-11 69.7 50 64.0
Phvul.001G149800 Phaseolus vulgaris HOM05D007833 ORTHO05D009855 9.2e-11 69.7 51 66.7
Prupe.8G242800 Prunus persica HOM05D007833 ORTHO05D009855 9.2e-11 69.7 50 62.0
Solyc06g084300.1 Solanum lycopersicum HOM05D007833 ORTHO05D009855 9.2e-11 69.7 50 62.0
Sopen06g035690 Solanum pennellii HOM05D007833 ORTHO05D009855 9.2e-11 69.7 50 62.0
vmacro02562 Vaccinium macrocarpon HOM05D007833 ORTHO05D009855 9.2e-11 69.7 49 65.3
Nitab4.5_0000759g0080 Nicotiana tabacum HOM05D007833 ORTHO05D009855 1.2e-10 69.3 57 56.1
FvH4_2g23750 Fragaria vesca HOM05D007833 ORTHO05D009855 1.6e-10 68.9 57 61.4
FAN24G2170 Fragaria x ananassa HOM05D007833 ORTHO05D009855 1.6e-10 68.9 57 61.4
Lj1g0020293 Lotus japonicus HOM05D007833 ORTHO05D009855 1.6e-10 68.9 43 74.4
Potri.005G208100 Populus trichocarpa HOM05D007833 ORTHO05D009855 2.0e-10 68.6 42 73.8
ECA247G0823 Erigeron canadensis HOM05D007833 ORTHO05D009855 2.7e-10 68.2 54 59.3
Nitab4.5_0014943g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 2.7e-10 68.2 52 61.5
Aqoxy6G00608 Aquilegia oxysepala HOM05D007833 ORTHO05D009855 3.5e-10 67.8 48 66.7
AUR62036454 Chenopodium quinoa HOM05D007833 ORTHO05D009855 3.5e-10 67.8 48 64.6
Nn1g02183 Nelumbo nucifera HOM05D007833 ORTHO05D009855 3.5e-10 67.8 47 66.0
Psat3g064960 Pisum sativum HOM05D007833 ORTHO05D009855 3.5e-10 67.8 48 66.7
Rhsim13G0023900 Rhododendron simsii HOM05D007833 ORTHO05D009855 3.5e-10 67.8 49 63.3
CSS0012022 Camellia sinensis var. sinensis HOM05D007833 ORTHO05D009855 4.6e-10 67.4 55 56.4
Sc24g0003060 Simmondsia chinensis HOM05D007833 ORTHO05D009855 4.6e-10 67.4 53 60.4
TAR365G0564 Trochodendron aralioides HOM05D007833 ORTHO05D009855 4.6e-10 67.4 50 60.0
Atru.chr5.1399 Acer truncatum HOM05D007833 ORTHO05D009855 6.0e-10 67.0 45 68.9
PGSC0003DMG400001195 Solanum tuberosum HOM05D007833 ORTHO05D009855 6.0e-10 67.0 50 62.0
Ciclev10023167m.g Citrus clementina HOM05D007833 ORTHO05D009855 1.0e-09 66.2 43 69.8
CsaV3_6G037060 Cucumis sativus L. HOM05D007833 ORTHO05D009855 1.0e-09 66.2 49 65.3
Glyma.19G154700 Glycine max HOM05D007833 ORTHO05D009855 1.0e-09 66.2 50 66.0
Oeu028084.1 Olea europaea HOM05D007833 ORTHO05D009855 1.0e-09 66.2 64 53.1
CANSAT25G0416 Cannabis sativa HOM05D007833 ORTHO05D009855 1.3e-09 65.9 50 58.0
Ca_08575_v3 Cicer arietinum L. HOM05D007833 ORTHO05D009855 1.3e-09 65.9 55 63.6
TPR.G26603 Trifolium pratense HOM05D007833 ORTHO05D009855 1.3e-09 65.9 50 66.0
Eucgr.K03378 Eucalyptus grandis HOM05D007833 ORTHO05D009855 1.7e-09 65.5 49 63.3
MD03G1267100 Malus domestica HOM05D007833 ORTHO05D009855 1.7e-09 65.5 67 52.2
EL10Ac7g17570 Beta vulgaris HOM05D007833 ORTHO05D009855 2.3e-09 65.1 57 57.9
AUR62017101 Chenopodium quinoa HOM05D007833 ORTHO05D009855 2.3e-09 65.1 50 60.0
PGSC0003DMG400020049 Solanum tuberosum HOM05D007833 ORTHO05D009855 2.3e-09 65.1 51 62.7
Cc01_g19620 Coffea canephora HOM05D007833 ORTHO05D009855 3.9e-09 64.3 51 56.9
Glyma.17G209300 Glycine max HOM05D007833 ORTHO05D009855 3.9e-09 64.3 50 64.0
Potri.002G054700 Populus trichocarpa HOM05D007833 ORTHO05D009855 3.9e-09 64.3 48 66.7
Ah.04g166580 Amaranthus hybridus HOM05D007833 ORTHO05D009855 8.6e-09 63.2 54 53.7
Glyma.03G152200 Glycine max HOM05D007833 ORTHO05D009855 8.6e-09 63.2 61 57.4
arahy.Tifrunner.gnm1.ann1.1H9ESI Arachis hypogaea HOM05D007833 ORTHO05D009855 1.1e-08 62.8 50 64.0
Duzib138G0003 Durio zibethinus HOM05D007833 ORTHO05D009855 1.1e-08 62.8 45 60.0
Cpa.g.sc52.17 Carica papaya HOM05D007833 ORTHO05D009855 1.5e-08 62.4 50 60.0
Hma1.2p1_0628F.1_g192040 Hydrangea macrophylla HOM05D007833 ORTHO05D009855 1.5e-08 62.4 51 54.9
Nn4g26217 Nelumbo nucifera HOM05D007833 ORTHO05D009855 1.9e-08 62.0 51 54.9
Actinidia00743 Actinidia chinensis HOM05D002055 ORTHO05D002120 2.5e-08 61.6 56 51.8
Peaxi162Scf00783g00321 Petunia axillaris HOM05D007833 ORTHO05D009855 2.5e-08 61.6 50 54.0
THA.LOC109116323 Tarenaya hassleriana HOM05D007833 ORTHO05D009855 5.6e-08 60.5 47 66.0
PGR044G2487 Punica granatum HOM05D007833 ORTHO05D009855 9.5e-08 59.7 37 70.3
Lalb_Chr20g0107771 Lupinus albus HOM05D007833 ORTHO05D009855 2.8e-07 58.2 44 68.2
SalBow6G6192 Salvia bowleyana HOM05D007833 ORTHO05D009855 4.7e-07 57.4 44 63.6
Dinv11245 Davidia involucrata HOM05D003232 ORTHO05D003584 6.2e-07 57.0 50 52.0
Migut.N02161 Erythranthe guttata HOM05D007833 ORTHO05D009855 1.4e-06 55.8 62 54.8
Thhalv10006356m.g Eutrema salsugineum HOM05D013424 ORTHO05D015332 5.2e-06 53.9 42 69.0
Peaxi162Scf00570g00076 Petunia axillaris HOM05D007833 ORTHO05D009855 8.9e-06 53.1 52 50.0


User provided reference genes

Program Settings