Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 7.4e-92 340.5 169 100.0
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 4.0e-90 334.7 169 97.6
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 5.3e-90 334.3 169 97.6
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 7.6e-89 330.5 169 97.0
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 7.6e-89 330.5 169 97.0
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 2.2e-88 328.9 169 96.4
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 5.1e-85 317.8 169 94.1
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 5.1e-85 317.8 169 94.1
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 5.1e-85 317.8 169 94.1
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 5.1e-85 317.8 169 94.1
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 5.1e-85 317.8 169 94.1
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 3.8e-80 301.6 200 80.5
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 1.2e-78 296.6 169 87.6
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 1.3e-72 276.6 169 80.5
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 1.3e-72 276.6 169 81.1
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 3.8e-72 275.0 169 80.5
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 8.5e-72 273.9 169 80.5
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 1.4e-71 273.1 169 80.5
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 1.4e-71 273.1 169 80.5
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 2.5e-71 272.3 168 79.2
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 3.2e-71 271.9 169 79.3
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 3.2e-71 271.9 169 79.3
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 4.2e-71 271.6 169 80.5
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 5.5e-71 271.2 169 79.3
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 7.2e-71 270.8 169 79.9
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 9.4e-71 270.4 169 78.1
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 1.2e-70 270.0 169 78.1
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 1.6e-70 269.6 169 79.3
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 1.6e-70 269.6 169 79.3
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 1.6e-70 269.6 169 79.9
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 2.1e-70 269.2 169 78.7
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.1e-70 269.2 169 78.7
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.1e-70 269.2 169 78.7
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.1e-70 269.2 169 78.7
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.1e-70 269.2 169 78.7
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 2.1e-70 269.2 169 79.3
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 3.6e-70 268.5 169 78.1
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 4.7e-70 268.1 169 79.9
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 6.1e-70 267.7 169 78.7
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 1.8e-69 266.2 175 76.6
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 2.3e-69 265.8 169 78.7
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 2.3e-69 265.8 169 78.7
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 3.9e-69 265.0 169 76.9
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 8.8e-69 263.8 169 75.7
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 1.1e-68 263.5 169 77.5
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 1.1e-68 263.5 169 77.5
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 2.0e-68 262.7 169 77.5
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 4.4e-68 261.5 169 76.9
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 7.4e-68 260.8 169 77.5
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 9.7e-68 260.4 169 76.9
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 9.7e-68 260.4 169 75.7
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 1.7e-67 259.6 169 76.3
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 1.7e-67 259.6 169 75.1
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 2.8e-67 258.8 169 76.3
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 3.7e-67 258.5 169 75.1
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 4.8e-67 258.1 169 74.6
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 6.3e-67 257.7 169 77.5
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 6.3e-67 257.7 169 75.1
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 1.4e-66 256.5 168 75.6
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 1.8e-66 256.1 216 63.9
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 1.8e-66 256.1 169 76.3
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 1.8e-66 256.1 169 76.3
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 1.8e-66 256.1 169 77.5
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 1.8e-66 256.1 169 75.7
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 4.1e-66 255.0 169 75.1
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 4.1e-66 255.0 160 78.8
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 5.9e-65 251.1 169 74.0
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 7.7e-65 250.8 160 78.1
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.3e-64 250.0 169 74.6
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 2.2e-64 249.2 169 74.0
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 5.5e-63 244.6 160 75.0
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 5.5e-63 244.6 169 73.4
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 5.5e-63 244.6 144 84.0
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 7.2e-63 244.2 169 72.8
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 1.2e-62 243.4 169 73.4
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 1.6e-62 243.0 159 76.1
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 3.6e-62 241.9 159 75.5
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 3.6e-62 241.9 169 74.0
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 6.1e-62 241.1 169 72.8
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 1.4e-61 240.0 145 80.0
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 1.5e-60 236.5 200 62.5
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 1.5e-60 236.5 145 79.3
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 5.7e-60 234.6 169 69.8
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 7.4e-60 234.2 212 59.9
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 2.2e-59 232.6 169 71.0
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 4.8e-59 231.5 168 70.2
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 8.2e-59 230.7 142 81.0
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 8.2e-59 230.7 142 81.0
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 1.4e-58 229.9 169 69.8
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 1.4e-58 229.9 169 69.8
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 1.4e-58 229.9 169 69.8
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 1.8e-58 229.6 160 71.9
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.8e-58 229.6 169 68.6
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 5.3e-58 228.0 131 82.4
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 4.5e-57 224.9 169 69.8
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 7.7e-57 224.2 169 68.6
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 1.0e-56 223.8 172 68.0
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 2.9e-56 222.2 168 68.5
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 2.9e-56 222.2 169 68.6
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 8.5e-56 220.7 169 68.0
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 1.5e-55 219.9 126 80.2
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 1.9e-55 219.5 172 68.0
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 7.2e-55 217.6 169 66.9
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 9.4e-55 217.2 169 66.3
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 9.4e-55 217.2 128 81.2
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 1.6e-54 216.5 120 85.0
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 3.6e-54 215.3 145 73.8
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 4.7e-54 214.9 142 75.4
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 4.7e-54 214.9 169 66.9
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 1.0e-53 213.8 169 65.1
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 1.0e-53 213.8 169 65.1
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 2.3e-53 212.6 169 66.9
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 6.7e-53 211.1 127 80.3
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 6.7e-53 211.1 126 77.0
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 1.2e-52 210.3 119 82.4
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 1.5e-52 209.9 126 77.0
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 4.1e-50 201.8 118 81.4
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 7.0e-50 201.1 160 65.0
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 7.7e-49 197.6 117 79.5
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 1.7e-48 196.4 115 80.0
BolC4t25664H Brassica oleracea HOM05D004785 ORTHO05D005704 9.8e-44 180.6 104 86.5
BcaC02g09278 Brassica carinata HOM05D004785 ORTHO05D005704 1.5e-39 166.8 129 69.8
C04p40800 Brassica napus HOM05D004785 ORTHO05D005704 1.5e-39 166.8 129 69.8
A04p07240 Brassica napus HOM05D004785 ORTHO05D005704 1.6e-38 163.3 122 73.0
BraA04t16419Z Brassica rapa HOM05D004785 ORTHO05D005704 1.8e-37 159.8 94 85.1
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 5.2e-37 158.3 132 59.8
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 2.7e-33 146.0 101 72.3
Eucgr.A02263 Eucalyptus grandis HOM05D004785 ORTHO05D005704 9.5e-31 137.5 91 74.7
Medtr8g036255 Medicago truncatula HOM05D004785 ORTHO05D005704 1.2e-30 137.1 74 85.1
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 6.1e-30 134.8 99 70.7
TAR623G0847 Trochodendron aralioides HOM05D004785 ORTHO05D005704 5.2e-29 131.7 100 69.0
ClCG09G004330 Citrullus lanatus HOM05D004785 ORTHO05D005704 5.8e-28 128.3 69 85.5
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 5.8e-28 128.3 108 61.1
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 5.8e-28 128.3 108 61.1
DCAR_029646 Daucus carota HOM05D004785 ORTHO05D005704 4.1e-26 122.1 68 80.9
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.8e-21 106.7 101 57.4
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 5.8e-20 101.7 58 81.0
Gohir.A08G145800 Gossypium hirsutum HOM05D004785 ORTHO05D005704 2.2e-19 99.8 83 65.1
MCO15G372 Micromonas commoda HOM05D004785 ORTHO05D005704 4.3e-15 85.5 127 40.9
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.2e-14 84.0 168 35.7
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 1.1e-13 80.9 168 35.1
AagrBONN_evm.TU.Sc2ySwM_228.74 Anthoceros agrestis HOM05D004785 ORTHO05D005704 4.0e-13 79.0 54 72.2
Medtr8g036260 Medicago truncatula HOM05D004785 ORTHO05D005704 4.7e-06 55.5 33 81.8
TPR.G31056 Trifolium pratense HOM05D007081 ORTHO05D008834 4.7e-06 55.5 65 50.8
MD02G1315400 Malus domestica HOM05D004785 ORTHO05D005704 8.1e-06 54.7 33 78.8


User provided reference genes

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