Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR161840 Cardamine hirsuta HOM05D006280 ORTHO05D007876 5.0e-292 1007.3 606 100.0
Carub.0005s1845 Capsella rubella HOM05D006280 ORTHO05D007876 7.2e-222 774.2 607 70.5
AL5G32680 Arabidopsis lyrata HOM05D006280 ORTHO05D007876 9.1e-217 757.3 607 70.5
AT3G52115 Arabidopsis thaliana HOM05D006280 ORTHO05D007876 5.1e-212 741.5 609 69.1
Sp5g10170 Schrenkiella parvula HOM05D006280 ORTHO05D007876 1.4e-209 733.4 610 70.5
Thhalv10010216m.g Eutrema salsugineum HOM05D006280 ORTHO05D007876 9.4e-198 694.1 611 74.5
Aa31LG10G7200 Aethionema arabicum HOM05D006280 ORTHO05D007876 6.6e-175 618.2 623 58.9
BcaB02g08586 Brassica carinata HOM05D006280 ORTHO05D007876 2.8e-173 612.8 608 60.0
BcaC02g09279 Brassica carinata HOM05D006280 ORTHO05D007876 3.0e-167 592.8 612 65.2
C04p40810 Brassica napus HOM05D006280 ORTHO05D007876 3.0e-167 592.8 612 65.2
BolC4t25665H Brassica oleracea HOM05D006280 ORTHO05D007876 3.0e-167 592.8 612 65.2
A04p07250 Brassica napus HOM05D006280 ORTHO05D007876 2.5e-166 589.7 614 64.8
BraA04t16420Z Brassica rapa HOM05D006280 ORTHO05D007876 2.5e-166 589.7 614 64.8
THA.LOC104802360 Tarenaya hassleriana HOM05D006280 ORTHO05D007876 1.3e-125 454.5 638 47.0
THA.LOC104817627 Tarenaya hassleriana HOM05D006280 ORTHO05D007876 3.1e-124 449.9 631 47.7
Gohir.D11G166400 Gossypium hirsutum HOM05D006280 ORTHO05D007876 9.4e-97 358.6 643 38.9
Gorai.007G177400 Gossypium raimondii HOM05D006280 ORTHO05D007876 9.4e-97 358.6 643 38.9
Gohir.A11G160200 Gossypium hirsutum HOM05D006280 ORTHO05D007876 6.1e-96 355.9 643 38.7
TWI09G0861 Tripterygium wilfordii HOM05D006280 ORTHO05D007876 2.3e-95 354.0 648 38.6
Thecc.01G413600 Theobroma cacao HOM05D006280 ORTHO05D007876 3.7e-93 346.7 638 38.7
QL04p005292 Quercus lobata HOM05D006280 ORTHO05D007876 5.3e-92 342.8 642 46.1
Cpa.g.sc234.10 Carica papaya HOM05D006280 ORTHO05D007876 3.5e-91 340.1 633 39.8
CSS0048133 Camellia sinensis var. sinensis HOM05D006280 ORTHO05D007876 1.0e-90 338.6 658 38.8
TWI73G0538 Tripterygium wilfordii HOM05D006280 ORTHO05D007876 1.5e-89 334.7 635 40.9
Lj9A629T105 Lonicera japonica HOM05D006280 ORTHO05D007876 3.2e-89 333.6 641 38.4
Duzib268G1473 Durio zibethinus HOM05D006280 ORTHO05D007876 6.1e-88 329.3 642 37.7
Actinidia20679 Actinidia chinensis HOM05D006280 ORTHO05D007876 6.7e-87 325.9 713 39.1
Hma1.2p1_0280F.1_g112910 Hydrangea macrophylla HOM05D006280 ORTHO05D007876 2.6e-86 323.9 661 43.7
CiPaw.13G003200 Carya illinoinensis HOM05D006280 ORTHO05D007876 4.4e-86 323.2 646 42.4
Sc14g0005130 Simmondsia chinensis HOM05D006280 ORTHO05D007876 8.2e-85 318.9 637 35.5
MELO3C023535.2 Cucumis melo HOM05D006280 ORTHO05D007876 4.1e-84 316.6 652 39.7
Nitab4.5_0003361g0010 Nicotiana tabacum HOM05D006280 ORTHO05D007876 4.1e-84 316.6 690 35.7
Sopen01g033930 Solanum pennellii HOM05D006280 ORTHO05D007876 7.0e-84 315.8 693 36.4
Peaxi162Scf00428g00816 Petunia axillaris HOM05D006280 ORTHO05D007876 9.1e-84 315.5 689 35.7
Haze_03235 Corylus avellana HOM05D006280 ORTHO05D007876 2.7e-83 313.9 638 36.1
CAN.G170.124 Capsicum annuum HOM05D006280 ORTHO05D007876 8.5e-82 308.9 692 36.1
Nitab4.5_0001542g0030 Nicotiana tabacum HOM05D006280 ORTHO05D007876 1.9e-81 307.8 691 36.0
Potri.001G269700 Populus trichocarpa HOM05D006280 ORTHO05D007876 4.2e-81 306.6 634 38.6
PGSC0003DMG400006815 Solanum tuberosum HOM05D006280 ORTHO05D007876 2.1e-80 304.3 698 35.8
Eucgr.J01260 Eucalyptus grandis HOM05D006280 ORTHO05D007876 2.7e-80 303.9 624 37.7
Hund03633 Selenicereus undatus HOM05D006280 ORTHO05D007876 2.8e-77 293.9 646 35.0
Cc02_g27560 Coffea canephora HOM05D006280 ORTHO05D007876 1.8e-76 291.2 701 34.0
Sed0005202 Sechium edule HOM05D006280 ORTHO05D007876 4.1e-76 290.0 662 43.8
PGR044G1516 Punica granatum HOM05D006280 ORTHO05D007876 5.4e-76 289.7 621 37.2
ClCG09G004310 Citrullus lanatus HOM05D006280 ORTHO05D007876 9.1e-76 288.9 713 42.4
Prupe.2G009900 Prunus persica HOM05D006280 ORTHO05D007876 2.7e-75 287.3 625 43.4
Lsat_1_v5_gn_4_46080 Lactuca sativa HOM05D006280 ORTHO05D007876 3.5e-75 287.0 625 34.4
EL10Ac6g13519 Beta vulgaris HOM05D006280 ORTHO05D007876 4.5e-75 286.6 683 33.7
AUR62028915 Chenopodium quinoa HOM05D006280 ORTHO05D007876 4.5e-75 286.6 623 36.9
Sabra09G0047500 Salix brachista HOM05D006280 ORTHO05D007876 7.7e-75 285.8 628 34.2
CANSAT01G2414 Cannabis sativa HOM05D006280 ORTHO05D007876 3.8e-74 283.5 637 36.7
GSVIVG01032060001 Vitis vinifera HOM05D006280 ORTHO05D007876 5.0e-74 283.1 618 38.8
HanXRQChr16g0519571 Helianthus annuus HOM05D006280 ORTHO05D007876 1.2e-72 278.5 657 42.2
Migut.B01331 Erythranthe guttata HOM05D006280 ORTHO05D007876 3.6e-72 276.9 693 33.9
MD02G1315100 Malus domestica HOM05D006280 ORTHO05D007876 3.6e-72 276.9 639 34.1
Manes.10G146200 Manihot esculenta HOM05D006280 ORTHO05D007876 8.0e-72 275.8 631 36.5
MSTRG.20601 Avicennia marina HOM05D006280 ORTHO05D007876 1.8e-71 274.6 692 34.4
Ciclev10030953m.g Citrus clementina HOM05D006280 ORTHO05D007876 3.0e-71 273.9 622 34.7
Aqoxy2G00116 Aquilegia oxysepala HOM05D006280 ORTHO05D007876 4.0e-71 273.5 616 35.1
PSO447G0216 Papaver somniferum HOM05D006280 ORTHO05D007876 5.2e-71 273.1 616 34.9
SGA_v2.0_scaffold119G32715 Striga asiatica HOM05D006280 ORTHO05D007876 8.8e-71 272.3 651 38.9
FAN03G0134 Fragaria x ananassa HOM05D006280 ORTHO05D007876 4.9e-69 266.5 673 33.0
Oeu039119.3 Olea europaea HOM05D006280 ORTHO05D007876 6.3e-69 266.2 701 41.1
ECA234G4003 Erigeron canadensis HOM05D006280 ORTHO05D007876 1.2e-67 261.9 634 42.7
Sed0013445 Sechium edule HOM05D006280 ORTHO05D007876 1.2e-67 261.9 640 35.2
MBI01_g40597_MAGBIO Magnolia biondii HOM05D006280 ORTHO05D007876 1.6e-67 261.5 638 32.3
SGA_v2.0_scaffold167G38459 Striga asiatica HOM05D006280 ORTHO05D007876 1.6e-67 261.5 680 31.6
RcHm_v2.0_Chr1g0314941 Rosa chinensis HOM05D006280 ORTHO05D007876 4.5e-67 260.0 620 41.6
SalBow7G2237 Salvia bowleyana HOM05D006280 ORTHO05D007876 2.3e-66 257.7 703 31.6
Potri.009G064200 Populus trichocarpa HOM05D006280 ORTHO05D007876 1.6e-64 251.5 615 38.0
FvH4_7g00721 Fragaria vesca HOM05D006280 ORTHO05D007876 6.1e-64 249.6 657 35.9
Dinv09375 Davidia involucrata HOM05D006280 ORTHO05D007876 3.4e-62 243.8 310 46.8
COL.COLO4_23913 Corchorus olitorius HOM05D006280 ORTHO05D008652 4.4e-62 243.4 614 34.7
FAN10G1835 Fragaria x ananassa HOM05D006280 ORTHO05D007876 4.4e-62 243.4 654 35.8
Solyc01g086930.4 Solanum lycopersicum HOM05D006280 ORTHO05D007876 2.9e-61 240.7 641 33.1
Lalb_Chr03g0033951 Lupinus albus HOM05D006280 ORTHO05D007876 4.9e-61 240.0 631 33.1
PSO210G6454 Papaver somniferum HOM05D006280 ORTHO05D007876 2.0e-59 234.6 312 45.2
MD07G1006900 Malus domestica HOM05D006280 ORTHO05D007876 1.1e-57 228.8 313 45.4
FAN01G1556 Fragaria x ananassa HOM05D006280 ORTHO05D007876 1.9e-57 228.0 316 45.3
FAN01G3121 Fragaria x ananassa HOM05D006280 ORTHO05D007876 1.9e-57 228.0 316 45.3
Os06g0613400 Oryza sativa ssp. japonica HOM05D006280 ORTHO05D007876 1.9e-57 228.0 661 31.9
Hma1.2p1_0845F.1_g227480 Hydrangea macrophylla HOM05D006280 ORTHO05D007876 5.6e-57 226.5 306 46.7
FAN06G1370 Fragaria x ananassa HOM05D006280 ORTHO05D007876 1.6e-56 224.9 421 37.3
AUR62005634 Chenopodium quinoa HOM05D006280 ORTHO05D007876 4.7e-56 223.4 583 33.1
Nn2g15492 Nelumbo nucifera HOM05D006280 ORTHO05D007876 2.0e-54 218.0 700 29.4
Zm00001eb388310 Zea mays HOM05D006280 ORTHO05D007876 9.8e-54 215.7 651 31.3
Ca_23874_v3 Cicer arietinum L. HOM05D006280 ORTHO05D007876 2.9e-53 214.2 631 30.1
QL04p005267 Quercus lobata HOM05D006280 ORTHO05D007876 2.9e-53 214.2 568 41.9
CsaV3_7G031230 Cucumis sativus L. HOM05D006280 ORTHO05D007876 2.4e-52 211.1 333 43.8
TAR636G0096 Trochodendron aralioides HOM05D006280 ORTHO05D007876 2.3e-50 204.5 262 44.3
Psat4g148560 Pisum sativum HOM05D006280 ORTHO05D007876 3.0e-50 204.1 645 31.8
arahy.Tifrunner.gnm1.ann1.JHR7K6 Arachis hypogaea HOM05D006280 ORTHO05D007876 3.9e-50 203.8 672 28.9
arahy.Tifrunner.gnm1.ann1.0Y513H Arachis hypogaea HOM05D006280 ORTHO05D007876 3.3e-49 200.7 303 42.2
TPR.G21742 Trifolium pratense HOM05D006280 ORTHO05D007876 3.3e-49 200.7 626 28.8
Medtr8g036940 Medicago truncatula HOM05D006280 ORTHO05D007876 1.2e-48 198.7 624 28.8
Glyma.12G238500 Glycine max HOM05D006280 ORTHO05D007876 4.0e-47 193.7 420 36.0
Rhsim01G0130700 Rhododendron simsii HOM05D006280 ORTHO05D007876 2.0e-46 191.4 182 57.1
Lj3g0014839 Lotus japonicus HOM05D006280 ORTHO05D007876 1.9e-44 184.9 672 28.1
ATR0824G264 Amborella trichopoda HOM05D006280 ORTHO05D007876 3.2e-44 184.1 671 30.1
Glyma.13G204200 Glycine max HOM05D006280 ORTHO05D007876 4.1e-44 183.7 189 55.0
VMungo1127G1733 Vigna mungo HOM05D006280 ORTHO05D007876 3.9e-42 177.2 383 34.7
CDE04G2764 Ceratophyllum demersum HOM05D006280 ORTHO05D007876 6.6e-42 176.4 306 40.8
Phvul.011G212200 Phaseolus vulgaris HOM05D006280 ORTHO05D007876 1.2e-35 155.6 365 35.3
Hma1.2p1_0312F.1_g121350 Hydrangea macrophylla HOM05D006280 ORTHO05D007876 1.3e-34 152.1 191 49.7
vmacro21179 Vaccinium macrocarpon HOM05D006280 ORTHO05D007876 2.5e-33 147.9 130 61.5
Dinv14268 Davidia involucrata HOM05D006280 ORTHO05D007876 5.6e-33 146.7 126 61.9
Dinv14267 Davidia involucrata HOM05D006280 ORTHO05D007876 1.4e-31 142.1 460 30.0
Dinv09374 Davidia involucrata HOM05D006280 ORTHO05D007876 2.6e-30 137.9 361 30.5
unitig_8.g3859 Utricularia gibba HOM05D006280 ORTHO05D007876 3.8e-29 134.0 295 36.6
Rhsim01G0130600 Rhododendron simsii HOM05D006280 ORTHO05D007876 1.1e-28 132.5 459 28.5
vmacro21180 Vaccinium macrocarpon HOM05D006280 ORTHO05D007876 6.0e-27 126.7 415 29.6
SEGI_32119 Sequoiadendron giganteum HOM05D006280 ORTHO05D007876 2.3e-26 124.8 686 24.1
TAR636G3118 Trochodendron aralioides HOM05D006280 ORTHO05D007876 1.1e-25 122.5 151 48.3
SMO196G0201 Selaginella moellendorffii HOM05D006280 ORTHO05D007876 2.5e-25 121.3 348 31.9
THA.LOC109117177 Tarenaya hassleriana HOM05D006280 ORTHO05D007876 1.2e-19 102.4 136 49.3
AagrBONN_evm.TU.Sc2ySwM_117.1753 Anthoceros agrestis HOM05D006280 ORTHO05D007876 5.1e-18 97.1 92 50.0
Mapoly0001s0083 Marchantia polymorpha HOM05D006280 ORTHO05D007876 5.1e-18 97.1 172 36.0
unitig_8.g3860 Utricularia gibba HOM05D006280 ORTHO05D007876 2.5e-17 94.7 131 47.3
Pp3c16_2140 Physcomitrium patens HOM05D006280 ORTHO05D007876 1.2e-14 85.9 332 30.4
PSO210G6643 Papaver somniferum HOM05D006280 ORTHO05D007876 2.9e-13 81.3 146 36.3
DCAR_006240 Daucus carota HOM05D006280 ORTHO05D007876 1.1e-09 69.3 146 33.6
QL04p005379 Quercus lobata HOM05D000011 ORTHO05D007876 5.6e-09 67.0 181 30.9
MCO05G132 Micromonas commoda HOM05D006280 ORTHO05D007876 8.2e-08 63.2 85 37.6
HPP92_006144 Vanilla planifolia HOM05D002569 ORTHO05D006728 8.2e-08 63.2 181 27.1
QL04p005302 Quercus lobata HOM05D006280 ORTHO05D007876 4.0e-07 60.8 175 31.4
Manes.07G004300 Manihot esculenta HOM05D006280 ORTHO05D007876 5.3e-07 60.5 344 25.3
AL7G43680 Arabidopsis lyrata HOM05D004217 ORTHO05D026831 1.5e-06 58.9 53 56.6
SMO351G0024 Selaginella moellendorffii HOM05D006280 ORTHO05D007876 5.8e-06 57.0 51 54.9


User provided reference genes

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