Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR153570 Cardamine hirsuta HOM05D006328 ORTHO05D007721 8.1e-143 510.4 254 100.0
Thhalv10004835m.g Eutrema salsugineum HOM05D006328 ORTHO05D007721 3.2e-115 418.7 254 85.0
Sp2g18300 Schrenkiella parvula HOM05D006328 ORTHO05D007721 1.0e-113 413.7 255 83.1
A06p39560 Brassica napus HOM05D006328 ORTHO05D007721 6.7e-113 411.0 255 82.4
C07p38710 Brassica napus HOM05D006328 ORTHO05D007721 6.7e-113 411.0 255 82.4
BraA06t26871Z Brassica rapa HOM05D006328 ORTHO05D007721 6.7e-113 411.0 255 82.4
BcaB04g19533 Brassica carinata HOM05D006328 ORTHO05D007721 1.5e-112 409.8 255 83.5
AL5G20530 Arabidopsis lyrata HOM05D006328 ORTHO05D007721 9.6e-112 407.1 257 81.7
AT3G32930 Arabidopsis thaliana HOM05D006328 ORTHO05D007721 2.1e-111 406.0 258 82.6
A09p04230 Brassica napus HOM05D006328 ORTHO05D007721 8.4e-108 394.0 256 81.2
BcaC04g23807 Brassica carinata HOM05D006328 ORTHO05D007721 1.1e-107 393.7 254 80.7
C09p04470 Brassica napus HOM05D006328 ORTHO05D007721 1.1e-107 393.7 254 80.7
BolC9t53377H Brassica oleracea HOM05D006328 ORTHO05D007721 1.1e-107 393.7 254 80.7
BraA09t36060Z Brassica rapa HOM05D006328 ORTHO05D007721 3.2e-107 392.1 257 80.9
THA.LOC104811061 Tarenaya hassleriana HOM05D006328 ORTHO05D007721 9.3e-107 390.6 258 76.7
Aa31LG4G12590 Aethionema arabicum HOM05D006328 ORTHO05D007721 1.8e-102 376.3 257 75.1
Carub.0003s3500 Capsella rubella HOM05D006328 ORTHO05D007721 3.1e-102 375.6 267 76.8
Cpa.g.sc119.81 Carica papaya HOM05D006328 ORTHO05D007721 2.8e-95 352.4 262 71.0
Ciclev10016391m.g Citrus clementina HOM05D006328 ORTHO05D007721 2.0e-93 346.3 247 72.1
Potri.003G216700 Populus trichocarpa HOM05D006328 ORTHO05D007721 2.1e-90 336.3 258 66.7
MELO3C015648.2 Cucumis melo HOM05D006328 ORTHO05D007721 2.7e-90 335.9 248 67.7
Thecc.09G213100 Theobroma cacao HOM05D006328 ORTHO05D007721 6.1e-90 334.7 259 66.4
CsaV3_1G042230 Cucumis sativus L. HOM05D006328 ORTHO05D007721 7.9e-90 334.3 248 67.7
Atru.chr3.2259 Acer truncatum HOM05D006328 ORTHO05D007721 1.8e-89 333.2 253 69.2
Atru.chr3.2265 Acer truncatum HOM05D006328 ORTHO05D007721 1.8e-89 333.2 253 69.2
ClCG08G005770 Citrullus lanatus HOM05D006328 ORTHO05D007721 1.5e-88 330.1 257 65.4
Manes.03G088400 Manihot esculenta HOM05D006328 ORTHO05D007721 2.6e-88 329.3 253 66.4
QL01p007982 Quercus lobata HOM05D006328 ORTHO05D007721 5.7e-88 328.2 259 64.9
Sed0015335 Sechium edule HOM05D006328 ORTHO05D007721 7.4e-88 327.8 261 64.0
ClCG03G013990 Citrullus lanatus HOM05D006328 ORTHO05D007721 2.2e-87 326.2 257 65.0
CiPaw.13G173100 Carya illinoinensis HOM05D006328 ORTHO05D007721 2.8e-87 325.9 245 66.9
Eucgr.B03625 Eucalyptus grandis HOM05D006328 ORTHO05D007721 2.8e-87 325.9 250 66.4
EL10Ac4g10350 Beta vulgaris HOM05D006328 ORTHO05D007721 3.7e-87 325.5 269 63.6
COL.COLO4_34990 Corchorus olitorius HOM05D001240 ORTHO05D002450 3.7e-87 325.5 224 71.4
Gohir.A13G213700 Gossypium hirsutum HOM05D006328 ORTHO05D007721 1.8e-86 323.2 240 67.1
GSVIVG01025405001 Vitis vinifera HOM05D006328 ORTHO05D007721 2.4e-86 322.8 231 70.1
Gohir.D13G217500 Gossypium hirsutum HOM05D006328 ORTHO05D007721 3.1e-86 322.4 240 67.1
Gorai.013G248000 Gossypium raimondii HOM05D006328 ORTHO05D007721 4.1e-86 322.0 240 67.1
CAN.G158.4 Capsicum annuum HOM05D006328 ORTHO05D007721 5.3e-86 321.6 262 65.6
FAN16G1952 Fragaria x ananassa HOM05D006328 ORTHO05D007721 5.3e-86 321.6 262 65.3
PGR102G1639 Punica granatum HOM05D006328 ORTHO05D007721 9.1e-86 320.9 239 69.5
Sabra03G0161800 Salix brachista HOM05D006328 ORTHO05D007721 9.1e-86 320.9 281 61.6
Sopen01g002030 Solanum pennellii HOM05D006328 ORTHO05D007721 1.6e-85 320.1 248 66.1
Actinidia16265 Actinidia chinensis HOM05D006328 ORTHO05D007721 2.0e-85 319.7 230 70.0
Nitab4.5_0011368g0030 Nicotiana tabacum HOM05D006328 ORTHO05D007721 2.6e-85 319.3 233 68.7
AUR62019196 Chenopodium quinoa HOM05D006328 ORTHO05D007721 3.5e-85 318.9 227 70.5
PGSC0003DMG400032183 Solanum tuberosum HOM05D006328 ORTHO05D007721 4.5e-85 318.5 249 66.7
FvH4_3g44830 Fragaria vesca HOM05D006328 ORTHO05D007721 1.0e-84 317.4 262 65.6
Lalb_Chr10g0091951 Lupinus albus HOM05D006328 ORTHO05D007721 1.3e-84 317.0 257 63.8
CANSAT11G2432 Cannabis sativa HOM05D006328 ORTHO05D007721 1.7e-84 316.6 276 63.4
Oeu029372.1 Olea europaea HOM05D006328 ORTHO05D007721 1.7e-84 316.6 235 68.9
FAN11G1794 Fragaria x ananassa HOM05D006328 ORTHO05D007721 2.2e-84 316.2 262 65.3
Solyc01g006020.4 Solanum lycopersicum HOM05D006328 ORTHO05D007721 2.2e-84 316.2 248 65.3
TWI60G0846 Tripterygium wilfordii HOM05D006328 ORTHO05D007721 2.2e-84 316.2 254 64.2
Nitab4.5_0000775g0140 Nicotiana tabacum HOM05D006328 ORTHO05D007721 3.8e-84 315.5 245 66.1
RcHm_v2.0_Chr5g0081531 Rosa chinensis HOM05D006328 ORTHO05D007721 3.8e-84 315.5 263 64.3
Dinv13426 Davidia involucrata HOM05D006328 ORTHO05D007721 5.0e-84 315.1 240 67.1
Lsat_1_v5_gn_2_101560 Lactuca sativa HOM05D006328 ORTHO05D007721 8.5e-84 314.3 237 63.7
Prupe.1G537200 Prunus persica HOM05D006328 ORTHO05D007721 8.5e-84 314.3 265 64.2
FAN25G2838 Fragaria x ananassa HOM05D006328 ORTHO05D007721 1.5e-83 313.5 262 64.9
Nn7g35935 Nelumbo nucifera HOM05D006328 ORTHO05D007721 1.5e-83 313.5 255 62.7
Glyma.08G315600 Glycine max HOM05D006328 ORTHO05D007721 7.2e-83 311.2 263 62.7
Hund07572 Selenicereus undatus HOM05D006328 ORTHO05D007721 7.2e-83 311.2 261 65.1
CSS0031266 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 9.4e-83 310.8 239 66.5
Medtr3g083310 Medicago truncatula HOM05D006328 ORTHO05D007721 9.4e-83 310.8 248 64.9
Peaxi162Scf00100g00716 Petunia axillaris HOM05D006328 ORTHO05D007721 2.1e-82 309.7 241 65.6
TAR633G0950 Trochodendron aralioides HOM05D006328 ORTHO05D007721 2.7e-82 309.3 258 62.0
TAR633G1956 Trochodendron aralioides HOM05D006328 ORTHO05D007721 2.7e-82 309.3 258 62.0
arahy.Tifrunner.gnm1.ann1.6HD85A Arachis hypogaea HOM05D006328 ORTHO05D007721 3.6e-82 308.9 258 62.8
ECA238G4721 Erigeron canadensis HOM05D006328 ORTHO05D007721 6.1e-82 308.1 192 75.0
FAN21G0799 Fragaria x ananassa HOM05D006328 ORTHO05D007721 1.0e-81 307.4 270 63.0
Cc01_g01550 Coffea canephora HOM05D006328 ORTHO05D007721 1.4e-81 307.0 264 59.1
Lj6g0000665 Lotus japonicus HOM05D006328 ORTHO05D007721 1.4e-81 307.0 261 64.0
Lj1A460T3 Lonicera japonica HOM05D006328 ORTHO05D007721 1.8e-81 306.6 239 64.9
MD08G1205200 Malus domestica HOM05D006328 ORTHO05D007721 2.3e-81 306.2 264 63.6
Phvul.006G042800 Phaseolus vulgaris HOM05D006328 ORTHO05D007721 3.0e-81 305.8 200 73.5
MSTRG.18860 Avicennia marina HOM05D006328 ORTHO05D007721 5.2e-81 305.1 241 61.4
Hma1.2p1_0062F.1_g034170 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 6.7e-81 304.7 189 74.1
TPR.G19330 Trifolium pratense HOM05D006328 ORTHO05D007721 6.7e-81 304.7 244 63.5
HanXRQChr07g0196761 Helianthus annuus HOM05D006328 ORTHO05D007721 8.8e-81 304.3 236 64.4
Haze_22985 Corylus avellana HOM05D006328 ORTHO05D007721 2.6e-80 302.8 308 55.8
Glyma.18G097300 Glycine max HOM05D006328 ORTHO05D007721 2.2e-79 299.7 265 61.5
SalBow6G6014 Salvia bowleyana HOM05D006328 ORTHO05D007721 6.3e-79 298.1 198 72.7
ATR0598G038 Amborella trichopoda HOM05D006328 ORTHO05D007721 8.2e-79 297.7 226 66.8
Manes.15G105600 Manihot esculenta HOM05D006328 ORTHO05D007721 5.3e-78 295.0 255 62.0
SGA_v2.0_scaffold6G03437 Striga asiatica HOM05D006328 ORTHO05D007721 1.2e-77 293.9 239 63.2
DCAR_001992 Daucus carota HOM05D006328 ORTHO05D007721 2.7e-77 292.7 206 68.9
MBI13_g29633_MAGBIO Magnolia biondii HOM05D006328 ORTHO05D007721 2.7e-77 292.7 238 65.1
AUR62000025 Chenopodium quinoa HOM05D006328 ORTHO05D007721 4.5e-77 292.0 174 79.9
Migut.D02532 Erythranthe guttata HOM05D006328 ORTHO05D007721 7.7e-77 291.2 206 67.5
PSO339G5084 Papaver somniferum HOM05D006328 ORTHO05D007721 1.0e-76 290.8 203 69.5
PSO384G1580 Papaver somniferum HOM05D006328 ORTHO05D007721 8.5e-76 287.7 203 69.0
Actinidia06854 Actinidia chinensis HOM05D001240 ORTHO05D002450 1.9e-75 286.6 216 68.1
HPP92_009650 Vanilla planifolia HOM05D006328 ORTHO05D007721 2.5e-75 286.2 189 74.1
CDE06G2606 Ceratophyllum demersum HOM05D006328 ORTHO05D007721 3.2e-75 285.8 255 62.0
unitig_746.g26630 Utricularia gibba HOM05D006328 ORTHO05D007721 3.2e-75 285.8 240 62.1
Duzib150G1371 Durio zibethinus HOM05D006328 ORTHO05D007721 1.2e-74 283.9 259 59.5
Ah.06g193050 Amaranthus hybridus HOM05D001193 ORTHO05D007721 2.3e-73 279.6 273 54.2
Rhsim13G0229700 Rhododendron simsii HOM05D006328 ORTHO05D007721 6.3e-71 271.6 223 62.3
Aqoxy1G00065 Aquilegia oxysepala HOM05D006328 ORTHO05D007721 7.0e-70 268.1 255 56.5
vmacro04215 Vaccinium macrocarpon HOM05D006328 ORTHO05D007721 2.0e-64 250.0 187 69.0
Hma1.2p1_0062F.1_g034180 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 3.4e-64 249.2 137 81.8
Zm00001eb108920 Zea mays HOM05D006328 ORTHO05D007721 4.9e-63 245.4 237 56.1
Os07g0608100 Oryza sativa ssp. japonica HOM05D006328 ORTHO05D007721 3.1e-62 242.7 256 54.7
Psat5g101200 Pisum sativum HOM05D006328 ORTHO05D007721 1.5e-59 233.8 195 61.0
VMungo0540G0449 Vigna mungo HOM05D006328 ORTHO05D007721 9.8e-56 221.1 122 83.6
AagrBONN_evm.TU.Sc2ySwM_344.1649 Anthoceros agrestis HOM05D006328 ORTHO05D007721 3.1e-49 199.5 188 55.3
Mapoly0048s0070 Marchantia polymorpha HOM05D006328 ORTHO05D007721 1.9e-46 190.3 192 51.6
Pp3c11_23310 Physcomitrium patens HOM05D006328 ORTHO05D007721 5.4e-46 188.7 190 54.2
Sc06g0004300 Simmondsia chinensis HOM05D006328 ORTHO05D007721 1.3e-44 184.1 190 54.7
vmacro22566 Vaccinium macrocarpon HOM05D006328 ORTHO05D007721 1.1e-43 181.0 105 82.9
CDE07G1106 Ceratophyllum demersum HOM05D006328 ORTHO05D007721 5.4e-38 162.2 245 43.3
CBR_g50072 Chara braunii HOM05D006328 ORTHO05D007721 6.0e-37 158.7 122 59.0
CSS0049555 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 1.2e-32 144.4 105 71.4
CSS0028438 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 2.9e-31 139.8 103 70.9
Duzib168G1709 Durio zibethinus HOM05D006328 ORTHO05D007721 3.8e-31 139.4 183 44.3
Nn2g15765 Nelumbo nucifera HOM05D006328 ORTHO05D007721 2.1e-29 133.7 71 87.3
HanXRQChr04g0113321 Helianthus annuus HOM05D006328 ORTHO05D007721 1.2e-24 117.9 61 85.2
Nn2g15764 Nelumbo nucifera HOM05D006328 ORTHO05D007721 8.7e-20 101.7 87 58.6
Dinv15017 Davidia involucrata HOM05D006328 ORTHO05D007721 3.6e-18 96.3 136 43.4
arahy.Tifrunner.gnm1.ann1.VB18ZC Arachis hypogaea HOM05D006328 ORTHO05D007721 2.4e-17 93.6 135 43.0
HanXRQChr17g0560491 Helianthus annuus HOM05D006328 ORTHO05D007721 3.1e-17 93.2 56 76.8
VMungo0540G1370 Vigna mungo HOM05D006328 ORTHO05D007721 1.3e-15 87.8 137 45.3
unitig_899.g15354 Utricularia gibba HOM05D006328 ORTHO05D007721 2.2e-15 87.0 50 74.0
Sabra06G0010000 Salix brachista HOM05D006328 ORTHO05D007721 3.8e-15 86.3 106 48.1
arahy.Tifrunner.gnm1.ann1.C5G03I Arachis hypogaea HOM05D006328 ORTHO05D007721 2.1e-13 80.5 84 53.6
Hma1.2p1_0062F.1_g034160 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 1.8e-12 77.4 79 49.4
Zm00001eb327220 Zea mays HOM05D006328 ORTHO05D007721 3.1e-09 66.6 63 57.1
BcaC02g11492 Brassica carinata HOM05D001205 ORTHO05D001087 4.5e-08 62.8 46 67.4
Dinv08842 Davidia involucrata HOM05D006328 ORTHO05D007721 3.2e-06 56.6 51 51.0


User provided reference genes

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