Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR149600 Cardamine hirsuta HOM05D002743 ORTHO05D002895 4.6e-146 521.2 253 100.0
AT3G28280 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 1.1e-67 260.8 223 61.9
AL5G17830 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 6.1e-66 255.0 236 58.5
AL5G17810 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.1e-62 244.2 220 60.9
Carub.0005s0676 Capsella rubella HOM05D002743 ORTHO05D002895 1.5e-56 223.8 218 54.1
AL8G22320 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.0e-53 213.4 217 55.3
AL34U10080 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 3.5e-53 212.6 217 55.3
C09p04580 Brassica napus HOM05D002743 ORTHO05D002895 6.5e-52 208.4 219 52.5
BraA09t36068Z Brassica rapa HOM05D002743 ORTHO05D002895 7.2e-51 204.9 223 51.1
AL8G22310 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.8e-50 203.0 217 54.8
A09p04310 Brassica napus HOM05D002743 ORTHO05D002895 1.4e-49 200.7 223 50.7
Carub.0008s0568 Capsella rubella HOM05D002743 ORTHO05D002895 4.0e-49 199.1 220 51.4
BcaC06g35723 Brassica carinata HOM05D002743 ORTHO05D002895 9.8e-48 194.5 245 46.1
BraA07t28566Z Brassica rapa HOM05D002743 ORTHO05D002895 1.3e-47 194.1 228 48.7
A07p07740 Brassica napus HOM05D002743 ORTHO05D002895 1.1e-46 191.0 228 48.2
AT3G28330 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 1.4e-46 190.7 219 51.1
BolC7t41637H Brassica oleracea HOM05D002743 ORTHO05D002895 1.4e-46 190.7 230 47.4
A02p35850 Brassica napus HOM05D002743 ORTHO05D002895 5.4e-46 188.7 217 50.7
BraA02t08585Z Brassica rapa HOM05D002743 ORTHO05D002895 5.4e-46 188.7 217 50.7
BraA02t08589Z Brassica rapa HOM05D002743 ORTHO05D002895 5.4e-46 188.7 217 50.7
C07p11650 Brassica napus HOM05D002743 ORTHO05D002895 9.2e-46 188.0 230 47.0
Carub.0005s0683 Capsella rubella HOM05D002743 ORTHO05D002895 9.2e-46 188.0 221 50.7
BcaC03g17512 Brassica carinata HOM05D002743 ORTHO05D002895 2.0e-45 186.8 217 50.2
C02p54750 Brassica napus HOM05D002743 ORTHO05D002895 2.0e-45 186.8 217 50.2
BolC2t11536H Brassica oleracea HOM05D002743 ORTHO05D002895 2.0e-45 186.8 217 50.2
A03p54310 Brassica napus HOM05D002743 ORTHO05D002895 2.9e-44 183.0 230 47.0
BcaC02g09624 Brassica carinata HOM05D002743 ORTHO05D002895 5.0e-44 182.2 224 49.1
BolC4t26061H Brassica oleracea HOM05D002743 ORTHO05D002895 5.0e-44 182.2 224 49.1
BcaNung01438 Brassica carinata HOM05D002743 ORTHO05D002895 8.6e-44 181.4 234 46.6
Carub.0005s0675 Capsella rubella HOM05D002743 ORTHO05D002895 8.6e-44 181.4 219 48.4
C04p44830 Brassica napus HOM05D002743 ORTHO05D002895 1.9e-43 180.3 224 49.1
A04p11100 Brassica napus HOM05D002743 ORTHO05D002895 7.3e-43 178.3 233 48.1
BraA04t16772Z Brassica rapa HOM05D002743 ORTHO05D002895 9.5e-43 177.9 233 47.6
BcaC04g23794 Brassica carinata HOM05D002743 ORTHO05D002895 2.8e-42 176.4 259 42.9
AT3G28223 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 6.1e-42 175.3 241 43.6
C09p04610 Brassica napus HOM05D002743 ORTHO05D002895 8.0e-42 174.9 259 42.5
BolC9t53389H Brassica oleracea HOM05D002743 ORTHO05D002895 8.0e-42 174.9 259 42.5
BolC9t53387H Brassica oleracea HOM05D002743 ORTHO05D002895 1.4e-41 174.1 211 46.9
CARHR292690 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.8e-41 173.7 153 62.1
Thhalv10000704m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 1.5e-40 170.6 313 37.1
BolC4t26059H Brassica oleracea HOM05D002743 ORTHO05D002895 4.4e-40 169.1 221 47.5
CARHR286050 Cardamine hirsuta HOM05D002743 ORTHO05D002895 7.0e-38 161.8 206 45.6
BolC7t45770H Brassica oleracea HOM05D002743 ORTHO05D002895 2.3e-36 156.8 203 45.8
BcaC04g23796 Brassica carinata HOM05D002743 ORTHO05D002895 3.0e-36 156.4 209 43.1
AT3G48220 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 3.9e-36 156.0 193 48.7
Thhalv10009727m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 5.0e-36 155.6 227 42.7
Carub.0005s0673 Capsella rubella HOM05D002743 ORTHO05D002895 3.3e-35 152.9 220 41.8
AL3G39670 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 8.0e-34 148.3 213 43.7
Carub.0004s2674 Capsella rubella HOM05D002743 ORTHO05D002895 1.8e-33 147.1 219 43.4
BcaC06g36618 Brassica carinata HOM05D002743 ORTHO05D002895 3.1e-33 146.4 221 43.9
BcaC06g36619 Brassica carinata HOM05D002743 ORTHO05D002895 3.1e-33 146.4 221 43.9
BcaC02g09623 Brassica carinata HOM05D002743 ORTHO05D002895 1.9e-30 137.1 173 48.6
SpUn0003_0080 Schrenkiella parvula HOM05D002743 ORTHO05D002895 2.4e-30 136.7 232 38.8
AL3G39690 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 7.8e-29 131.7 169 46.7
AL133U10030 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.1e-26 123.6 156 48.1
Thhalv10028185m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 3.6e-26 122.9 191 45.0
BcaC04g23797 Brassica carinata HOM05D002743 ORTHO05D002895 1.1e-25 121.3 138 51.4
C07p02110 Brassica napus HOM05D002743 ORTHO05D002895 2.3e-25 120.2 175 45.7
BcaB04g19549 Brassica carinata HOM05D002743 ORTHO05D002895 2.4e-22 110.2 209 35.4
AL5G17850 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 4.1e-22 109.4 123 53.7
A02p35860 Brassica napus HOM05D002743 ORTHO05D002895 4.1e-22 109.4 174 40.2
Thhalv10009395m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 4.6e-21 105.9 196 37.2
Thhalv10022100m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 1.3e-20 104.4 160 40.6
BraA03t14493Z Brassica rapa HOM05D002743 ORTHO05D002895 2.3e-20 103.6 137 47.4
BcaB06g27161 Brassica carinata HOM05D002743 ORTHO05D002895 6.6e-20 102.1 107 50.5
BolC7t41698H Brassica oleracea HOM05D002743 ORTHO05D002895 1.5e-19 100.9 235 32.3
C07p12300 Brassica napus HOM05D002743 ORTHO05D002895 5.6e-19 99.0 237 31.6
BcaC06g35666 Brassica carinata HOM05D002743 ORTHO05D002895 7.3e-19 98.6 237 31.6
AL6G43490 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 9.5e-19 98.2 230 33.0
BcaB03g16763 Brassica carinata HOM05D002743 ORTHO05D002895 1.6e-18 97.4 221 34.8
AL4G45790 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 4.7e-18 95.9 186 34.9
A07p08150 Brassica napus HOM05D002743 ORTHO05D002895 8.1e-18 95.1 233 30.0
BraA07t28599Z Brassica rapa HOM05D002743 ORTHO05D002895 1.1e-17 94.7 233 30.0
BcaB06g26601 Brassica carinata HOM05D002743 ORTHO05D002895 8.9e-17 91.7 239 31.0
AL3G39540 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.5e-16 90.9 224 30.8
AL6G47130 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.0e-16 90.5 228 30.7
THA.LOC104824016 Tarenaya hassleriana HOM05D002743 ORTHO05D002895 2.0e-16 90.5 238 32.4
AL5G16370 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.6e-16 90.1 234 33.8
Carub.0003s2455 Capsella rubella HOM05D002743 ORTHO05D002895 4.4e-16 89.4 225 29.8
AL6G48160 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 7.6e-16 88.6 216 31.9
Aa31sc58G40 Aethionema arabicum HOM05D002743 ORTHO05D002895 9.9e-16 88.2 233 31.8
AT1G15680 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 9.9e-16 88.2 255 32.9
THA.LOC104805970 Tarenaya hassleriana HOM05D002743 ORTHO05D002895 9.9e-16 88.2 230 30.4
AL3G39550 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.7e-15 87.4 219 31.1
AT3G23950 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 3.8e-15 86.3 223 30.9
Sp2g04630 Schrenkiella parvula HOM05D002743 ORTHO05D002895 3.8e-15 86.3 221 31.2
Aa31sc58G10 Aethionema arabicum HOM05D002743 ORTHO05D002895 4.9e-15 85.9 230 30.4
C04p44820 Brassica napus HOM05D002743 ORTHO05D002895 6.4e-15 85.5 107 46.7
CARHR100280 Cardamine hirsuta HOM05D002743 ORTHO05D002895 6.4e-15 85.5 219 29.7
Sp3g21990 Schrenkiella parvula HOM05D002743 ORTHO05D002895 8.4e-15 85.1 235 28.9
AL1G27780 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.1e-14 84.7 222 31.5
BraA02t08588Z Brassica rapa HOM05D002743 ORTHO05D002895 1.1e-14 84.7 153 34.0
CARHR033610 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.4e-14 84.3 221 30.8
THA.LOC104823978 Tarenaya hassleriana HOM05D002743 ORTHO05D002895 1.4e-14 84.3 244 32.4
AL5G14680 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.9e-14 84.0 220 31.8
Aa31LG9G5850 Aethionema arabicum HOM05D002743 ORTHO05D002895 3.2e-14 83.2 237 30.0
BcaC04g22203 Brassica carinata HOM05D002743 ORTHO05D002895 9.2e-14 81.6 219 30.6
A09p17800 Brassica napus HOM05D002743 ORTHO05D002895 9.2e-14 81.6 219 30.1
C09p22150 Brassica napus HOM05D002743 ORTHO05D002895 9.2e-14 81.6 219 30.6
BraA09t37413Z Brassica rapa HOM05D002743 ORTHO05D002895 9.2e-14 81.6 219 30.1
AL34U10060 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.2e-13 81.3 207 31.4
CARHR158010 Cardamine hirsuta HOM05D002743 ORTHO05D002895 2.1e-13 80.5 129 42.6
A02p35840 Brassica napus HOM05D002743 ORTHO05D002895 2.7e-13 80.1 172 32.0
Thhalv10024137m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 2.7e-13 80.1 171 35.1
AL6G48200 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 6.0e-13 79.0 217 33.2
BolC9t55130H Brassica oleracea HOM05D002743 ORTHO05D002895 7.8e-13 78.6 219 29.7
AT3G26010 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 1.3e-12 77.8 220 31.8
BcaB07g31193 Brassica carinata HOM05D002743 ORTHO05D002895 1.7e-12 77.4 212 30.7
AL1G67480 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.3e-12 77.0 220 29.5
A02p35880 Brassica napus HOM05D002743 ORTHO05D002895 2.3e-12 77.0 74 56.8
BcaC01g00721 Brassica carinata HOM05D002743 ORTHO05D002895 3.9e-12 76.3 210 30.0
C03p83580 Brassica napus HOM05D002743 ORTHO05D002895 3.9e-12 76.3 210 30.0
BolC3t20638H Brassica oleracea HOM05D002743 ORTHO05D002895 3.9e-12 76.3 210 30.0
AT4G22430 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 1.5e-11 74.3 219 31.5
Carub.0006s3248 Capsella rubella HOM05D002743 ORTHO05D002895 4.3e-11 72.8 228 30.7
CARHR100270 Cardamine hirsuta HOM05D002743 ORTHO05D002895 5.6e-11 72.4 208 29.3
C07p52690 Brassica napus HOM05D002743 ORTHO05D002895 1.6e-10 70.9 68 48.5
Thhalv10027176m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 2.8e-10 70.1 216 29.2
BcaB07g33451 Brassica carinata HOM05D002743 ORTHO05D002895 3.6e-10 69.7 160 32.5
A06p03440 Brassica napus HOM05D002743 ORTHO05D002895 4.7e-10 69.3 165 32.1
Carub.0005s1587 Capsella rubella HOM05D002743 ORTHO05D002895 4.7e-10 69.3 231 28.6
BolC2t06988H Brassica oleracea HOM05D002743 ORTHO05D002895 6.2e-10 68.9 218 26.6
Carub.0003s2456 Capsella rubella HOM05D002743 ORTHO05D002895 6.2e-10 68.9 161 31.7
BraA06t23552Z Brassica rapa HOM05D002743 ORTHO05D002895 1.8e-09 67.4 137 32.8
BcaB07g33449 Brassica carinata HOM05D002743 ORTHO05D002895 2.4e-09 67.0 221 28.5
BraA01t01181Z Brassica rapa HOM05D002743 ORTHO05D002895 2.4e-09 67.0 153 35.3
C06p04770 Brassica napus HOM05D002743 ORTHO05D002895 3.1e-09 66.6 163 30.1
BcaC08g43177 Brassica carinata HOM05D002743 ORTHO05D002895 4.0e-09 66.2 137 32.1
A01p12360 Brassica napus HOM05D002743 ORTHO05D002895 6.9e-09 65.5 153 35.3
BolC1t01435H Brassica oleracea HOM05D002743 ORTHO05D002895 6.9e-09 65.5 132 37.9
BNapus_Darmor_BZH_scaffold_38p02040 Brassica napus HOM05D002743 ORTHO05D002895 9.0e-09 65.1 131 31.3
BcaB07g33448 Brassica carinata HOM05D002743 ORTHO05D002895 1.2e-08 64.7 225 26.2
Sp1g36850 Schrenkiella parvula HOM05D002743 ORTHO05D002895 1.5e-08 64.3 167 31.1
SpUn0137_0030 Schrenkiella parvula HOM05D002743 ORTHO05D002895 1.5e-08 64.3 167 31.1
AL5G27910 Arabidopsis lyrata HOM05D002743 ORTHO05D021402 2.6e-08 63.5 37 70.3
A05p20390 Brassica napus HOM05D002743 ORTHO05D002895 7.6e-08 62.0 174 28.7
A10p19880 Brassica napus HOM05D002743 ORTHO05D002895 2.2e-07 60.5 177 31.1
BolC6t35599H Brassica oleracea HOM05D002743 ORTHO05D002895 3.8e-07 59.7 150 30.7
BraA05t20946Z Brassica rapa HOM05D002743 ORTHO05D002895 1.9e-06 57.4 176 27.8


User provided reference genes

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