Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR148720 Cardamine hirsuta HOM05D004148 ORTHO05D004709 2.6e-135 485.3 241 100.0
AL5G21540 Arabidopsis lyrata HOM05D004148 ORTHO05D004709 2.7e-71 272.7 241 63.1
Sp5g17550 Schrenkiella parvula HOM05D004148 ORTHO05D004709 3.5e-71 272.3 241 63.1
BcaB02g10777 Brassica carinata HOM05D004148 ORTHO05D004709 8.7e-70 267.7 232 62.9
BcaC01g02217 Brassica carinata HOM05D004148 ORTHO05D004709 4.3e-69 265.4 241 61.4
AT3G43610 Arabidopsis thaliana HOM05D004148 ORTHO05D004709 1.3e-68 263.8 232 63.8
Thhalv10002374m.g Eutrema salsugineum HOM05D004148 ORTHO05D004709 4.8e-68 261.9 241 59.8
BcaC01g01775 Brassica carinata HOM05D004148 ORTHO05D004709 4.0e-67 258.8 241 60.2
C03p72000 Brassica napus HOM05D004148 ORTHO05D004709 4.0e-67 258.8 241 60.2
BolC3t19498H Brassica oleracea HOM05D004148 ORTHO05D004709 4.0e-67 258.8 241 60.2
A06p19850 Brassica napus HOM05D004148 ORTHO05D004709 5.3e-67 258.5 241 59.3
Carub.0005s0933 Capsella rubella HOM05D004148 ORTHO05D004709 3.4e-66 255.8 241 60.6
BraA06t25067Z Brassica rapa HOM05D004148 ORTHO05D004709 5.8e-66 255.0 241 59.3
Carub.0005s0948 Capsella rubella HOM05D004148 ORTHO05D004709 3.8e-65 252.3 241 59.8
THA.LOC104815063 Tarenaya hassleriana HOM05D004148 ORTHO05D004709 6.6e-62 241.5 241 56.0
CARHR289540 Cardamine hirsuta HOM05D004148 ORTHO05D004709 9.0e-59 231.1 210 63.3
Aa31LG4G13420 Aethionema arabicum HOM05D004148 ORTHO05D004709 3.4e-58 229.2 231 56.7
BcaB01g00875 Brassica carinata HOM05D004148 ORTHO05D004709 3.3e-45 186.0 209 52.2
Thecc.09G266000 Theobroma cacao HOM05D004148 ORTHO05D004709 1.3e-41 174.1 229 45.9
Actinidia12896 Actinidia chinensis HOM05D001400 ORTHO05D001795 6.5e-41 171.8 235 45.1
Cfa010235 Carpinus fangiana HOM05D004148 ORTHO05D004709 6.5e-41 171.8 223 44.8
Atru.chr3.3014 Acer truncatum HOM05D004148 ORTHO05D004709 2.5e-40 169.9 219 45.2
GSVIVG01022379001 Vitis vinifera HOM05D004148 ORTHO05D004709 1.6e-39 167.2 227 44.9
Gohir.A05G076400 Gossypium hirsutum HOM05D004148 ORTHO05D004709 2.1e-39 166.8 209 46.4
Lj2A891G11 Lonicera japonica HOM05D004148 ORTHO05D004709 2.7e-39 166.4 205 46.3
Duzib168G1551 Durio zibethinus HOM05D004148 ORTHO05D004709 4.6e-39 165.6 209 45.5
Gohir.D05G079200 Gossypium hirsutum HOM05D004148 ORTHO05D004709 7.9e-39 164.9 209 46.4
Prupe.6G151400 Prunus persica HOM05D004148 ORTHO05D004709 1.0e-38 164.5 220 44.5
Dinv32838 Davidia involucrata HOM05D004148 ORTHO05D004709 1.3e-38 164.1 229 44.1
Gorai.009G080700 Gossypium raimondii HOM05D004148 ORTHO05D004709 5.1e-38 162.2 207 45.9
RcHm_v2.0_Chr5g0049541 Rosa chinensis HOM05D004148 ORTHO05D004709 1.5e-37 160.6 231 42.4
FAN17G2621 Fragaria x ananassa HOM05D004148 ORTHO05D004709 2.5e-37 159.8 232 42.2
Potri.009G153300 Populus trichocarpa HOM05D004148 ORTHO05D004709 2.5e-37 159.8 218 43.6
FAN22G0787 Fragaria x ananassa HOM05D004148 ORTHO05D004709 4.3e-37 159.1 232 42.2
FvH4_4g33990 Fragaria vesca HOM05D004148 ORTHO05D004709 1.6e-36 157.1 234 41.9
TWI60G0836 Tripterygium wilfordii HOM05D004148 ORTHO05D004709 2.2e-36 156.8 231 42.4
Ciclev10027694m.g Citrus clementina HOM05D004148 ORTHO05D004709 6.3e-36 155.2 215 41.9
QL01p018674 Quercus lobata HOM05D004148 ORTHO05D004709 6.3e-36 155.2 231 43.3
Lalb_Chr16g0376251 Lupinus albus HOM05D004148 ORTHO05D004709 8.2e-36 154.8 221 45.2
Psat4g228400 Pisum sativum HOM05D004148 ORTHO05D004709 1.4e-35 154.1 232 41.4
CANSAT54G2785 Cannabis sativa HOM05D004148 ORTHO05D004709 1.8e-35 153.7 234 39.7
Lj1g0011831 Lotus japonicus HOM05D004148 ORTHO05D004709 2.4e-35 153.3 218 44.5
Manes.04G054800 Manihot esculenta HOM05D004148 ORTHO05D004709 2.4e-35 153.3 220 42.7
Ah.15g099170 Amaranthus hybridus HOM05D004148 ORTHO05D004709 3.1e-35 152.9 214 41.6
MD11G1178600 Malus domestica HOM05D004148 ORTHO05D004709 5.3e-35 152.1 223 42.6
Glyma.01G244400 Glycine max HOM05D004148 ORTHO05D004709 1.2e-34 151.0 231 42.9
TAR623G1397 Trochodendron aralioides HOM05D004148 ORTHO05D004709 1.5e-34 150.6 218 40.4
Rhsim13G0199700 Rhododendron simsii HOM05D004148 ORTHO05D004709 2.0e-34 150.2 244 39.3
Ca_24340_v3 Cicer arietinum L. HOM05D004148 ORTHO05D004709 2.6e-34 149.8 209 44.0
Phvul.002G053700 Phaseolus vulgaris HOM05D004148 ORTHO05D004709 5.9e-34 148.7 216 45.4
Medtr5g004880 Medicago truncatula HOM05D004148 ORTHO05D004709 1.3e-33 147.5 212 43.4
arahy.Tifrunner.gnm1.ann1.J94639 Arachis hypogaea HOM05D004148 ORTHO05D004709 1.7e-33 147.1 229 41.9
CSS0002631 Camellia sinensis var. sinensis HOM05D004148 ORTHO05D004709 2.2e-33 146.7 164 51.8
SalBow6G3333 Salvia bowleyana HOM05D004148 ORTHO05D004709 2.9e-33 146.4 220 39.1
Sc06g0008560 Simmondsia chinensis HOM05D004148 ORTHO05D004709 3.8e-33 146.0 225 39.6
vmacro04062 Vaccinium macrocarpon HOM05D004148 ORTHO05D004709 3.8e-33 146.0 242 39.7
Lsat_1_v5_gn_5_75780 Lactuca sativa HOM05D004148 ORTHO05D004709 1.4e-32 144.1 225 40.4
ECA233G2337 Erigeron canadensis HOM05D004148 ORTHO05D004709 2.5e-32 143.3 231 40.3
Hund18819 Selenicereus undatus HOM05D004148 ORTHO05D004709 5.5e-32 142.1 210 41.0
Cc00_g06190 Coffea canephora HOM05D004148 ORTHO05D004709 7.2e-32 141.7 207 41.5
Migut.D00721 Erythranthe guttata HOM05D004148 ORTHO05D004709 7.2e-32 141.7 218 38.5
VMungo1215G0285 Vigna mungo HOM05D004148 ORTHO05D004709 7.2e-32 141.7 216 43.5
CiPaw.13G126900 Carya illinoinensis HOM05D004148 ORTHO05D004709 1.2e-31 141.0 214 42.5
CSS0008927 Camellia sinensis var. sinensis HOM05D004148 ORTHO05D004709 4.6e-31 139.0 152 52.6
PGR102G2778 Punica granatum HOM05D004148 ORTHO05D004709 4.6e-31 139.0 242 39.7
EL10Ac7g16248 Beta vulgaris HOM05D004148 ORTHO05D004709 7.9e-31 138.3 213 41.3
Oeu048810.1 Olea europaea HOM05D004148 ORTHO05D004709 7.9e-31 138.3 237 38.8
PSO339G2294 Papaver somniferum HOM05D004148 ORTHO05D004709 3.0e-30 136.3 217 39.2
Aqoxy1G00551 Aquilegia oxysepala HOM05D004148 ORTHO05D004709 3.9e-30 136.0 219 37.4
Sed0012220 Sechium edule HOM05D004148 ORTHO05D004709 3.9e-30 136.0 241 38.2
PSO384G5014 Papaver somniferum HOM05D004148 ORTHO05D004709 8.8e-30 134.8 218 38.5
FAN12G2472 Fragaria x ananassa HOM05D004148 ORTHO05D004709 1.5e-29 134.0 238 37.4
HanXRQChr03g0089821 Helianthus annuus HOM05D004148 ORTHO05D004709 2.6e-29 133.3 123 53.7
MSTRG.21311 Avicennia marina HOM05D004148 ORTHO05D004709 4.4e-29 132.5 217 36.4
AUR62001591 Chenopodium quinoa HOM05D004148 ORTHO05D004709 5.7e-29 132.1 119 54.6
Peaxi162Scf00217g00627 Petunia axillaris HOM05D004148 ORTHO05D004709 7.4e-29 131.7 221 37.1
CAN.G439.18 Capsicum annuum HOM05D004148 ORTHO05D004709 1.3e-28 131.0 225 36.4
Hma1.2p1_0218F.1_g092390 Hydrangea macrophylla HOM05D004148 ORTHO05D004709 1.3e-28 131.0 168 47.0
MBI11_g07705_MAGBIO Magnolia biondii HOM05D004148 ORTHO05D004709 1.7e-28 130.6 215 38.1
Nn2g14486 Nelumbo nucifera HOM05D004148 ORTHO05D004709 1.7e-28 130.6 232 34.9
Cpa.g.sc103.96 Carica papaya HOM05D004148 ORTHO05D004709 2.2e-28 130.2 112 58.9
CsaV3_3G017640 Cucumis sativus L. HOM05D004148 ORTHO05D004709 8.2e-28 128.3 229 38.9
MELO3C020298.2 Cucumis melo HOM05D004148 ORTHO05D004709 1.8e-27 127.1 242 37.6
Solyc11g071570.3 Solanum lycopersicum HOM05D004148 ORTHO05D004709 2.4e-27 126.7 240 35.0
Sopen11g029250 Solanum pennellii HOM05D004148 ORTHO05D004709 2.4e-27 126.7 225 36.0
Nitab4.5_0000615g0090 Nicotiana tabacum HOM05D004148 ORTHO05D004709 3.1e-27 126.3 211 38.9
SGA_v2.0_scaffold29G12109 Striga asiatica HOM05D004148 ORTHO05D004709 4.1e-27 125.9 213 37.1
ClCG05G010880 Citrullus lanatus HOM05D004148 ORTHO05D004709 1.2e-26 124.4 249 36.9
MD03G1162300 Malus domestica HOM05D004148 ORTHO05D004709 2.0e-26 123.6 219 38.8
FvH4_3g27030 Fragaria vesca HOM05D004148 ORTHO05D004709 5.0e-25 119.0 150 46.0
ATR0697G020 Amborella trichopoda HOM05D004148 ORTHO05D004709 1.4e-24 117.5 215 37.7
AUR62020189 Chenopodium quinoa HOM05D004148 ORTHO05D004709 1.2e-23 114.4 195 34.4
CARHR148450 Cardamine hirsuta HOM05D004148 ORTHO05D004709 1.6e-23 114.0 65 84.6
Nitab4.5_0005222g0040 Nicotiana tabacum HOM05D004148 ORTHO05D004709 1.6e-23 114.0 229 35.8
unitig_21.g20311 Utricularia gibba HOM05D004148 ORTHO05D004709 2.6e-21 106.7 213 31.9
DCAR_012264 Daucus carota HOM05D000495 ORTHO05D000357 4.4e-21 105.9 129 50.4
Zm00001eb073760 Zea mays HOM05D004148 ORTHO05D004709 3.5e-18 96.3 212 31.1
Zm00001eb428880 Zea mays HOM05D004148 ORTHO05D004709 1.1e-16 91.3 212 29.7
SHI25291 Sapria himalayana HOM05D004148 ORTHO05D004709 1.0e-14 84.7 56 60.7
AagrBONN_evm.TU.Sc2ySwM_228.375 Anthoceros agrestis HOM05D004148 ORTHO05D004709 4.4e-13 79.3 169 31.4
CDE07G1769 Ceratophyllum demersum HOM05D004148 ORTHO05D004709 9.7e-13 78.2 62 56.5
SMO172G0086 Selaginella moellendorffii HOM05D004148 ORTHO05D004709 2.2e-12 77.0 107 34.6
Mapoly0099s0003 Marchantia polymorpha HOM05D004148 ORTHO05D004709 2.4e-11 73.6 242 24.0
Os04g0566800 Oryza sativa ssp. japonica HOM05D004148 ORTHO05D004709 3.5e-10 69.7 70 47.1
Pp3c11_24620 Physcomitrium patens HOM05D004148 ORTHO05D004709 8.5e-09 65.1 133 27.1
Haze_23626 Corylus avellana HOM05D004148 ORTHO05D004709 6.1e-07 58.9 34 79.4
CBR_g23077 Chara braunii HOM05D004148 ORTHO05D004709 6.8e-06 55.5 47 51.1


User provided reference genes

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