Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR148450 Cardamine hirsuta HOM05D004148 ORTHO05D004709 8.6e-204 713.4 349 100.0
AL5G21540 Arabidopsis lyrata HOM05D004148 ORTHO05D004709 7.7e-160 567.4 351 80.3
AT3G43610 Arabidopsis thaliana HOM05D004148 ORTHO05D004709 3.8e-151 538.5 351 78.3
Sp5g17550 Schrenkiella parvula HOM05D004148 ORTHO05D004709 1.1e-147 526.9 349 76.8
Thhalv10002374m.g Eutrema salsugineum HOM05D004148 ORTHO05D004709 1.7e-143 513.1 351 75.8
BcaC01g01775 Brassica carinata HOM05D004148 ORTHO05D004709 2.9e-135 485.7 353 72.0
BolC3t19498H Brassica oleracea HOM05D004148 ORTHO05D004709 2.9e-135 485.7 353 72.0
C03p72000 Brassica napus HOM05D004148 ORTHO05D004709 5.5e-134 481.5 353 71.4
BcaC01g02217 Brassica carinata HOM05D004148 ORTHO05D004709 7.2e-134 481.1 351 72.1
A06p19850 Brassica napus HOM05D004148 ORTHO05D004709 8.0e-133 477.6 353 70.8
Carub.0005s0948 Capsella rubella HOM05D004148 ORTHO05D004709 1.4e-132 476.9 351 70.9
Carub.0005s0933 Capsella rubella HOM05D004148 ORTHO05D004709 3.0e-132 475.7 351 71.2
BcaB02g10777 Brassica carinata HOM05D004148 ORTHO05D004709 3.4e-131 472.2 353 71.7
BraA06t25067Z Brassica rapa HOM05D004148 ORTHO05D004709 9.1e-129 464.2 356 69.4
Aa31LG4G13420 Aethionema arabicum HOM05D004148 ORTHO05D004709 1.6e-104 383.6 339 63.1
BcaB01g00875 Brassica carinata HOM05D004148 ORTHO05D004709 1.9e-97 360.1 348 57.8
CARHR108980 Cardamine hirsuta HOM05D004148 ORTHO05D004709 1.2e-85 320.9 202 81.2
THA.LOC104815063 Tarenaya hassleriana HOM05D004148 ORTHO05D004709 1.2e-80 304.3 355 51.8
CARHR289540 Cardamine hirsuta HOM05D004148 ORTHO05D004709 7.8e-80 301.6 261 60.5
CARHR108670 Cardamine hirsuta HOM05D004148 ORTHO05D004709 2.3e-79 300.1 191 82.2
Thecc.09G266000 Theobroma cacao HOM05D004148 ORTHO05D004709 1.9e-33 147.5 370 31.6
Duzib168G1551 Durio zibethinus HOM05D004148 ORTHO05D004709 7.2e-33 145.6 372 30.9
Cpa.g.sc103.97 Carica papaya HOM05D004148 ORTHO05D004709 6.1e-32 142.5 374 34.8
Gohir.A05G076400 Gossypium hirsutum HOM05D004148 ORTHO05D004709 1.7e-29 134.4 369 31.4
Prupe.6G151400 Prunus persica HOM05D004148 ORTHO05D004709 2.8e-29 133.7 356 31.5
TWI60G0836 Tripterygium wilfordii HOM05D004148 ORTHO05D004709 8.2e-29 132.1 378 31.2
Atru.chr3.3014 Acer truncatum HOM05D004148 ORTHO05D004709 1.8e-28 131.0 373 30.3
Potri.009G153300 Populus trichocarpa HOM05D004148 ORTHO05D004709 1.2e-27 128.3 383 32.6
Ciclev10027694m.g Citrus clementina HOM05D004148 ORTHO05D004709 3.5e-27 126.7 372 32.3
Gohir.D05G079200 Gossypium hirsutum HOM05D004148 ORTHO05D004709 6.5e-26 122.5 368 30.7
Gorai.009G080700 Gossypium raimondii HOM05D004148 ORTHO05D004709 8.5e-26 122.1 369 30.6
Dinv32838 Davidia involucrata HOM05D004148 ORTHO05D004709 7.2e-25 119.0 377 30.8
CARHR148720 Cardamine hirsuta HOM05D004148 ORTHO05D004709 2.3e-23 114.0 65 84.6
RcHm_v2.0_Chr5g0049541 Rosa chinensis HOM05D004148 ORTHO05D004709 8.8e-23 112.1 357 31.1
Cfa010235 Carpinus fangiana HOM05D004148 ORTHO05D004709 3.3e-22 110.2 381 29.1
Haze_23627 Corylus avellana HOM05D004148 ORTHO05D004709 3.3e-22 110.2 369 29.8
QL01p018674 Quercus lobata HOM05D004148 ORTHO05D004709 3.7e-21 106.7 375 28.3
FAN17G2621 Fragaria x ananassa HOM05D004148 ORTHO05D004709 4.8e-21 106.3 364 30.5
AUR62020189 Chenopodium quinoa HOM05D004148 ORTHO05D004709 8.2e-21 105.5 367 28.6
CANSAT54G2785 Cannabis sativa HOM05D004148 ORTHO05D004709 2.4e-20 104.0 362 31.8
FvH4_4g33990 Fragaria vesca HOM05D004148 ORTHO05D004709 2.4e-20 104.0 363 29.8
FAN22G0787 Fragaria x ananassa HOM05D004148 ORTHO05D004709 2.4e-20 104.0 355 29.0
EL10Ac7g16248 Beta vulgaris HOM05D004148 ORTHO05D004709 2.7e-19 100.5 365 30.1
Lj2A891G11 Lonicera japonica HOM05D004148 ORTHO05D004709 1.3e-18 98.2 383 28.5
TAR623G1397 Trochodendron aralioides HOM05D004148 ORTHO05D004709 1.3e-18 98.2 386 28.2
Hund18819 Selenicereus undatus HOM05D004148 ORTHO05D004709 1.7e-18 97.8 376 27.7
vmacro04062 Vaccinium macrocarpon HOM05D004148 ORTHO05D004709 1.7e-18 97.8 377 28.4
MD03G1162300 Malus domestica HOM05D004148 ORTHO05D004709 5.0e-18 96.3 230 32.2
Aqoxy1G00551 Aquilegia oxysepala HOM05D004148 ORTHO05D004709 6.5e-18 95.9 377 27.1
MD11G1178600 Malus domestica HOM05D004148 ORTHO05D004709 1.9e-17 94.4 370 28.9
Rhsim13G0199700 Rhododendron simsii HOM05D004148 ORTHO05D004709 1.9e-17 94.4 369 27.1
Sc06g0008560 Simmondsia chinensis HOM05D004148 ORTHO05D004709 1.9e-17 94.4 359 27.9
Actinidia12896 Actinidia chinensis HOM05D001400 ORTHO05D001795 1.2e-16 91.7 381 27.6
Hma1.2p1_0218F.1_g092390 Hydrangea macrophylla HOM05D004148 ORTHO05D004709 1.2e-16 91.7 375 30.1
Glyma.01G244400 Glycine max HOM05D004148 ORTHO05D004709 2.1e-16 90.9 381 29.7
Manes.04G054800 Manihot esculenta HOM05D004148 ORTHO05D004709 1.0e-15 88.6 352 28.7
CiPaw.13G126900 Carya illinoinensis HOM05D004148 ORTHO05D004709 3.0e-15 87.0 373 30.0
Ah.15g099170 Amaranthus hybridus HOM05D004148 ORTHO05D004709 1.2e-14 85.1 360 26.9
Lalb_Chr16g0376251 Lupinus albus HOM05D004148 ORTHO05D004709 1.3e-13 81.6 385 27.5
Lj1g0011831 Lotus japonicus HOM05D004148 ORTHO05D004709 2.2e-13 80.9 203 32.5
PSO384G5014 Papaver somniferum HOM05D004148 ORTHO05D004709 2.2e-13 80.9 265 29.4
Phvul.002G053700 Phaseolus vulgaris HOM05D004148 ORTHO05D004709 1.1e-12 78.6 380 30.3
VMungo1215G0285 Vigna mungo HOM05D004148 ORTHO05D004709 2.4e-12 77.4 378 28.0
Sed0012220 Sechium edule HOM05D004148 ORTHO05D004709 3.1e-12 77.0 242 30.2
MELO3C020298.2 Cucumis melo HOM05D004148 ORTHO05D004709 4.1e-12 76.6 245 31.0
Ca_24340_v3 Cicer arietinum L. HOM05D004148 ORTHO05D004709 5.4e-12 76.3 375 25.9
MBI11_g07705_MAGBIO Magnolia biondii HOM05D004148 ORTHO05D004709 1.6e-11 74.7 272 27.2
Nn2g14486 Nelumbo nucifera HOM05D004148 ORTHO05D004709 1.6e-11 74.7 373 25.5
CsaV3_3G017640 Cucumis sativus L. HOM05D004148 ORTHO05D004709 2.0e-11 74.3 243 30.9
arahy.Tifrunner.gnm1.ann1.SF9HJV Arachis hypogaea HOM05D004148 ORTHO05D004709 2.7e-11 73.9 214 27.6
PSO339G2294 Papaver somniferum HOM05D004148 ORTHO05D004709 2.7e-11 73.9 268 27.6
BolSC21t60233H Brassica oleracea HOM05D004148 ORTHO05D004709 7.7e-11 72.4 62 62.9
CAN.G439.18 Capsicum annuum HOM05D004148 ORTHO05D004709 1.7e-10 71.2 181 27.1
PGR102G2778 Punica granatum HOM05D004148 ORTHO05D004709 1.7e-10 71.2 137 37.2
Oeu048810.1 Olea europaea HOM05D004148 ORTHO05D004709 2.9e-10 70.5 368 27.4
arahy.Tifrunner.gnm1.ann1.J94639 Arachis hypogaea HOM05D004148 ORTHO05D004709 3.8e-10 70.1 370 24.1
Psat4g228400 Pisum sativum HOM05D004148 ORTHO05D004709 3.8e-10 70.1 376 26.1
Medtr5g004880 Medicago truncatula HOM05D004148 ORTHO05D004709 1.5e-09 68.2 357 24.9
SEGI_18042 Sequoiadendron giganteum HOM05D004148 ORTHO05D004709 1.5e-09 68.2 314 23.2
Migut.D00721 Erythranthe guttata HOM05D004148 ORTHO05D004709 2.5e-09 67.4 351 23.6
Eucgr.B03795 Eucalyptus grandis HOM05D004148 ORTHO05D004709 2.5e-09 67.4 162 33.3
Psat3g010920 Pisum sativum HOM05D004148 ORTHO05D004709 2.5e-09 67.4 150 34.7
ECA233G2337 Erigeron canadensis HOM05D004148 ORTHO05D004709 4.2e-09 66.6 191 29.3
SalBow6G3333 Salvia bowleyana HOM05D004148 ORTHO05D004709 4.2e-09 66.6 220 28.6
MSTRG.21311 Avicennia marina HOM05D004148 ORTHO05D004709 5.5e-09 66.2 238 26.1
ClCG05G010880 Citrullus lanatus HOM05D004148 ORTHO05D004709 9.5e-09 65.5 356 28.7
FAN12G2472 Fragaria x ananassa HOM05D004148 ORTHO05D004709 9.5e-09 65.5 338 24.9
Peaxi162Scf00217g00627 Petunia axillaris HOM05D004148 ORTHO05D004709 9.5e-09 65.5 208 25.0
Cc00_g06190 Coffea canephora HOM05D004148 ORTHO05D004709 2.1e-08 64.3 208 27.9
Sopen11g029250 Solanum pennellii HOM05D004148 ORTHO05D004709 2.1e-08 64.3 181 25.4
SGA_v2.0_scaffold29G12109 Striga asiatica HOM05D004148 ORTHO05D004709 2.1e-08 64.3 136 34.6
Zm00001eb073760 Zea mays HOM05D004148 ORTHO05D004709 1.0e-07 62.0 164 29.3
Solyc11g071570.3 Solanum lycopersicum HOM05D004148 ORTHO05D004709 2.3e-07 60.8 168 26.8
GSVIVG01022379001 Vitis vinifera HOM05D004148 ORTHO05D004709 6.8e-07 59.3 109 34.9
Lsat_1_v5_gn_5_75780 Lactuca sativa HOM05D004148 ORTHO05D004709 2.6e-06 57.4 206 25.2
SHI25294 Sapria himalayana HOM05D004148 ORTHO05D004709 2.6e-06 57.4 194 29.4
HanXRQChr03g0089821 Helianthus annuus HOM05D004148 ORTHO05D004709 7.5e-06 55.8 207 25.1
Zm00001eb428880 Zea mays HOM05D004148 ORTHO05D004709 7.5e-06 55.8 164 27.4


User provided reference genes

Program Settings