Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR148330 Cardamine hirsuta HOM05D005629 ORTHO05D008000 1.4e-145 519.6 262 100.0
AL5G16240 Arabidopsis lyrata HOM05D005629 ORTHO05D008000 4.9e-127 458.0 257 92.6
Thhalv10004520m.g Eutrema salsugineum HOM05D005629 ORTHO05D008000 4.2e-126 454.9 255 91.4
AT3G27110 Arabidopsis thaliana HOM05D005629 ORTHO05D008000 2.1e-125 452.6 257 91.8
Carub.0005s0536 Capsella rubella HOM05D005629 ORTHO05D008000 6.0e-125 451.1 257 91.4
Sp2g16240 Schrenkiella parvula HOM05D005629 ORTHO05D008000 7.8e-125 450.7 255 90.2
BcaC06g33860 Brassica carinata HOM05D005629 ORTHO05D008000 6.9e-121 437.6 255 88.6
BolC7t44133H Brassica oleracea HOM05D005629 ORTHO05D008000 2.0e-120 436.0 255 88.2
BcaC06g33857 Brassica carinata HOM05D005629 ORTHO05D008000 9.9e-120 433.7 255 89.0
C07p36170 Brassica napus HOM05D005629 ORTHO05D008000 9.9e-120 433.7 255 88.2
BraA06t27073Z Brassica rapa HOM05D005629 ORTHO05D008000 2.2e-119 432.6 255 87.5
Aa31LG2G5490 Aethionema arabicum HOM05D005629 ORTHO05D008000 1.1e-118 430.3 253 86.2
A06p41480 Brassica napus HOM05D005629 ORTHO05D008000 4.2e-118 428.3 255 87.1
BcaC06g31019 Brassica carinata HOM05D005629 ORTHO05D008000 9.0e-113 410.6 236 90.3
THA.LOC104825621 Tarenaya hassleriana HOM05D005629 ORTHO05D008000 8.7e-108 394.0 260 80.0
Cpa.g.sc171.18 Carica papaya HOM05D005629 ORTHO05D008000 3.7e-98 362.1 257 72.8
Manes.15G160600 Manihot esculenta HOM05D005629 ORTHO05D008000 4.5e-96 355.1 251 74.1
MD09G1011200 Malus domestica HOM05D005629 ORTHO05D008000 1.7e-95 353.2 255 71.4
Eucgr.I01649 Eucalyptus grandis HOM05D005629 ORTHO05D008000 8.5e-95 350.9 254 71.7
Lj1g0025061 Lotus japonicus HOM05D005629 ORTHO05D008000 1.4e-94 350.1 252 70.2
Ca_26782_v3 Cicer arietinum L. HOM05D005629 ORTHO05D008000 1.9e-94 349.7 198 84.8
Ciclev10015840m.g Citrus clementina HOM05D005629 ORTHO05D008000 2.5e-94 349.4 211 80.6
TWI56G1125 Tripterygium wilfordii HOM05D005629 ORTHO05D008000 7.2e-94 347.8 217 79.7
CSS0048682 Camellia sinensis var. sinensis HOM05D005629 ORTHO05D004503 1.6e-93 346.7 253 71.5
GSVIVG01033097001 Vitis vinifera HOM05D005629 ORTHO05D008000 2.7e-93 345.9 200 84.0
Glyma.16G056900 Glycine max HOM05D005629 ORTHO05D008000 3.6e-93 345.5 213 78.4
QL02p071469 Quercus lobata HOM05D005629 ORTHO05D008000 3.6e-93 345.5 253 69.6
arahy.Tifrunner.gnm1.ann1.26H0NE Arachis hypogaea HOM05D005629 ORTHO05D008000 4.6e-93 345.1 210 80.5
Cfa007230 Carpinus fangiana HOM05D005629 ORTHO05D008000 4.6e-93 345.1 250 70.8
Haze_14872 Corylus avellana HOM05D005629 ORTHO05D008000 7.9e-93 344.4 250 70.4
Sabra16G0211800 Salix brachista HOM05D005629 ORTHO05D008000 1.8e-92 343.2 218 80.3
FAN05G5024 Fragaria x ananassa HOM05D005629 ORTHO05D008000 3.9e-92 342.0 201 82.1
FAN09G2642 Fragaria x ananassa HOM05D005629 ORTHO05D008000 3.9e-92 342.0 201 81.6
PGR142G0641 Punica granatum HOM05D005629 ORTHO05D008000 3.9e-92 342.0 200 85.0
Potri.001G330800 Populus trichocarpa HOM05D005629 ORTHO05D008000 5.1e-92 341.7 220 78.6
Prupe.3G305800 Prunus persica HOM05D005629 ORTHO05D008000 6.7e-92 341.3 220 78.6
CANSAT64G1539 Cannabis sativa HOM05D005629 ORTHO05D008000 8.8e-92 340.9 226 74.8
COL.COLO4_17207 Corchorus olitorius HOM05D005629 ORTHO05D008000 8.8e-92 340.9 214 79.4
FvH4_6g53470 Fragaria vesca HOM05D005629 ORTHO05D008000 1.5e-91 340.1 201 81.6
Psat3g164800 Pisum sativum HOM05D005629 ORTHO05D008000 1.5e-91 340.1 199 81.9
Lalb_Chr14g0363391 Lupinus albus HOM05D005629 ORTHO05D008000 2.0e-91 339.7 214 78.0
Sc03g0006560 Simmondsia chinensis HOM05D005629 ORTHO05D008000 2.0e-91 339.7 213 78.4
Phvul.001G094100 Phaseolus vulgaris HOM05D005629 ORTHO05D008000 2.5e-91 339.3 251 68.9
Dinv33339 Davidia involucrata HOM05D005629 ORTHO05D008000 3.3e-91 339.0 212 78.8
Thecc.04G035600 Theobroma cacao HOM05D005629 ORTHO05D008000 3.3e-91 339.0 215 78.6
VMungo1383G2395 Vigna mungo HOM05D005629 ORTHO05D008000 9.7e-91 337.4 215 76.7
Actinidia36200 Actinidia chinensis HOM05D005629 ORTHO05D008000 1.3e-90 337.0 225 76.0
RcHm_v2.0_Chr2g0175511 Rosa chinensis HOM05D005629 ORTHO05D008000 3.7e-90 335.5 195 84.1
Aqoxy3G01541 Aquilegia oxysepala HOM05D005629 ORTHO05D008000 4.8e-90 335.1 203 80.3
CiPaw.03G055300 Carya illinoinensis HOM05D005629 ORTHO05D008000 4.8e-90 335.1 250 68.8
Gohir.D07G235300 Gossypium hirsutum HOM05D005629 ORTHO05D008000 6.3e-90 334.7 200 79.5
Nitab4.5_0005161g0130 Nicotiana tabacum HOM05D005629 ORTHO05D008000 6.3e-90 334.7 196 83.7
Peaxi162Scf00700g00023 Petunia axillaris HOM05D005629 ORTHO05D008000 6.3e-90 334.7 196 83.2
MELO3C014882.2 Cucumis melo HOM05D005629 ORTHO05D008000 8.2e-90 334.3 250 68.0
Gohir.A07G228100 Gossypium hirsutum HOM05D005629 ORTHO05D008000 8.2e-90 334.3 215 77.2
HanXRQChr17g0550111 Helianthus annuus HOM05D005629 ORTHO05D008000 8.2e-90 334.3 202 80.2
Hma1.2p1_1278F.1_g272330 Hydrangea macrophylla HOM05D005629 ORTHO05D008000 8.2e-90 334.3 198 81.8
FAN02G3075 Fragaria x ananassa HOM05D005629 ORTHO05D008000 1.1e-89 334.0 209 78.5
PGSC0003DMG400013378 Solanum tuberosum HOM05D005629 ORTHO05D008000 1.1e-89 334.0 196 83.2
Atru.chr6.2566 Acer truncatum HOM05D005629 ORTHO05D008000 1.4e-89 333.6 195 84.1
CsaV3_3G027030 Cucumis sativus L. HOM05D005629 ORTHO05D008000 5.3e-89 331.6 250 67.6
ECA246G2396 Erigeron canadensis HOM05D005629 ORTHO05D008000 5.3e-89 331.6 218 75.2
Oeu058781.1 Olea europaea HOM05D005629 ORTHO05D008000 5.3e-89 331.6 252 68.3
ClCG05G013480 Citrullus lanatus HOM05D005629 ORTHO05D008000 6.9e-89 331.3 231 71.0
Gohir.A11G064500 Gossypium hirsutum HOM05D005629 ORTHO05D008000 6.9e-89 331.3 214 75.2
Gorai.001G271100 Gossypium raimondii HOM05D005629 ORTHO05D008000 6.9e-89 331.3 201 79.6
PSO017G3506 Papaver somniferum HOM05D005629 ORTHO05D008000 6.9e-89 331.3 221 74.2
Sed0004120 Sechium edule HOM05D005629 ORTHO05D008000 6.9e-89 331.3 199 80.4
TPR.G38340 Trifolium pratense HOM05D005629 ORTHO05D008000 9.1e-89 330.9 203 79.3
Actinidia05920 Actinidia chinensis HOM05D005629 ORTHO05D008000 1.2e-88 330.5 229 75.1
Gohir.D11G068800 Gossypium hirsutum HOM05D005629 ORTHO05D008000 1.2e-88 330.5 214 74.8
SGA_v2.0_scaffold253G45198 Striga asiatica HOM05D005629 ORTHO05D008000 1.2e-88 330.5 219 73.5
Medtr7g033405 Medicago truncatula HOM05D005629 ORTHO05D008000 1.5e-88 330.1 189 83.1
Nitab4.5_0000559g0400 Nicotiana tabacum HOM05D005629 ORTHO05D008000 1.5e-88 330.1 194 82.0
SalBow4G2288 Salvia bowleyana HOM05D005629 ORTHO05D008000 2.0e-88 329.7 196 80.6
Solyc03g005000.4 Solanum lycopersicum HOM05D005629 ORTHO05D008000 3.4e-88 328.9 196 81.6
Sopen03g001010 Solanum pennellii HOM05D005629 ORTHO05D008000 3.4e-88 328.9 196 81.6
Duzib264G0865 Durio zibethinus HOM05D005629 ORTHO05D008000 1.7e-87 326.6 215 74.9
Gorai.007G073600 Gossypium raimondii HOM05D005629 ORTHO05D008000 1.7e-87 326.6 215 74.4
CAN.G1751.5 Capsicum annuum HOM05D005629 ORTHO05D008000 2.2e-87 326.2 196 81.1
Cc07_g00800 Coffea canephora HOM05D005629 ORTHO05D008000 2.2e-87 326.2 189 82.0
HPP92_024304 Vanilla planifolia HOM05D005629 ORTHO05D008000 1.9e-86 323.2 208 76.9
Ah.02g120470 Amaranthus hybridus HOM05D005629 ORTHO05D008000 4.2e-86 322.0 203 75.9
ATR0561G239 Amborella trichopoda HOM05D005629 ORTHO05D008000 5.5e-86 321.6 203 76.4
EL10Ac6g15359 Beta vulgaris HOM05D005629 ORTHO05D008000 1.6e-85 320.1 260 63.5
HPP92_024293 Vanilla planifolia HOM05D005629 ORTHO05D008000 1.6e-85 320.1 208 76.4
Lju41A52T99 Lonicera japonica HOM05D005629 ORTHO05D008000 2.1e-85 319.7 215 74.9
Migut.F00066 Erythranthe guttata HOM05D005629 ORTHO05D008000 4.7e-85 318.5 197 78.2
DCAR_011309 Daucus carota HOM05D005629 ORTHO05D008000 1.4e-84 317.0 213 72.8
Os01g0970700 Oryza sativa ssp. japonica HOM05D005629 ORTHO05D008000 8.8e-84 314.3 194 78.9
Zm00001eb127160 Zea mays HOM05D005629 ORTHO05D008000 8.8e-84 314.3 186 83.3
Hund04337 Selenicereus undatus HOM05D005629 ORTHO05D008000 2.8e-82 309.3 242 65.3
unitig_52.g17654 Utricularia gibba HOM05D005629 ORTHO05D008000 2.8e-82 309.3 206 73.3
FAN14G4117 Fragaria x ananassa HOM05D005629 ORTHO05D008000 1.4e-81 307.0 265 61.9
Rhsim10G0006600 Rhododendron simsii HOM05D005629 ORTHO05D008000 1.4e-81 307.0 231 69.3
Mapoly0033s0112 Marchantia polymorpha HOM05D005629 ORTHO05D008000 1.2e-80 303.9 187 76.5
SEGI_10761 Sequoiadendron giganteum HOM05D005629 ORTHO05D008000 2.0e-80 303.1 209 72.7
vmacro05954 Vaccinium macrocarpon HOM05D005629 ORTHO05D008000 3.5e-80 302.4 216 70.4
Migut.H00778 Erythranthe guttata HOM05D005629 ORTHO05D008000 3.7e-74 282.3 172 79.1
CDE05G1086 Ceratophyllum demersum HOM05D001132 ORTHO05D002510 2.7e-69 266.2 186 72.6
Dinv25662 Davidia involucrata HOM05D005629 ORTHO05D000552 4.0e-68 262.3 145 89.7
AUR62003511 Chenopodium quinoa HOM05D005629 ORTHO05D008000 5.3e-65 251.9 160 75.0
Migut.G01029 Erythranthe guttata HOM05D005629 ORTHO05D008000 4.5e-64 248.8 180 72.2
Cre14.g620150 Chlamydomonas reinhardtii HOM05D005629 ORTHO05D008000 1.7e-63 246.9 188 63.8
Migut.K01513 Erythranthe guttata HOM05D005629 ORTHO05D008000 6.5e-63 245.0 183 69.9
AUR62017822 Chenopodium quinoa HOM05D005629 ORTHO05D008000 9.4e-62 241.1 145 79.3
Nn4g22342 Nelumbo nucifera HOM05D005629 ORTHO05D008000 1.2e-61 240.7 207 61.4
Gorai.004G126700 Gossypium raimondii HOM05D005629 ORTHO05D008000 4.7e-61 238.8 147 81.0
Gohir.D08G117950 Gossypium hirsutum HOM05D005629 ORTHO05D008000 5.2e-60 235.3 145 80.7
MCO03G471 Micromonas commoda HOM05D005629 ORTHO05D008000 3.7e-58 229.2 182 59.3
Migut.K01251 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.3e-55 220.7 159 71.1
Zm00001eb427710 Zea mays HOM05D005629 ORTHO05D003422 2.0e-51 206.8 120 83.3
AagrBONN_evm.TU.Sc2ySwM_117.2248 Anthoceros agrestis HOM05D005629 ORTHO05D008000 3.7e-50 202.6 122 76.2
PRCOL_00001739 Prasinoderma coloniale HOM05D005629 ORTHO05D008000 6.3e-50 201.8 182 51.6
Zm00001eb174780 Zea mays HOM05D005629 ORTHO05D008000 8.3e-50 201.4 116 84.5
Zm00001eb146790 Zea mays HOM05D005629 ORTHO05D003607 9.2e-49 198.0 117 83.8
Zm00001eb332250 Zea mays HOM05D002343 ORTHO05D002443 1.1e-46 191.0 129 74.4
FvH4_6g53350 Fragaria vesca HOM05D005629 ORTHO05D022663 2.0e-35 153.7 235 37.9
FvH4_6g53390 Fragaria vesca HOM05D005629 ORTHO05D022663 9.2e-33 144.8 208 42.8
Zm00001eb202540 Zea mays HOM05D002249 ORTHO05D002443 1.9e-30 137.1 91 73.6
arahy.Tifrunner.gnm1.ann1.0H9GWB Arachis hypogaea HOM05D005629 ORTHO05D008000 3.1e-28 129.8 76 82.9
FvH4_6g53420 Fragaria vesca HOM05D005629 ORTHO05D022663 5.8e-27 125.6 143 49.0
Lsat_1_v5_gn_9_1240 Lactuca sativa HOM05D005629 ORTHO05D008000 9.9e-27 124.8 69 84.1
Lsat_1_v5_gn_0_46360 Lactuca sativa HOM05D005629 ORTHO05D008000 4.1e-25 119.4 111 57.7
FAN14G1519 Fragaria x ananassa HOM05D005629 ORTHO05D022663 3.8e-18 96.3 207 33.3
PRCOL_00005410 Prasinoderma coloniale HOM05D005629 ORTHO05D333266 9.3e-17 91.7 241 31.1
FvH4_6g53460 Fragaria vesca HOM05D005629 ORTHO05D022663 2.1e-13 80.5 134 39.6
AagrBONN_evm.TU.Sc2ySwM_228.873 Anthoceros agrestis HOM05D005629 ORTHO05D008000 3.6e-13 79.7 212 30.2
CDE02G4678 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 1.5e-11 74.3 189 30.2
Zm00001eb059400 Zea mays HOM05D003056 ORTHO05D003422 5.1e-07 59.3 59 55.9
FvH4_6g53450 Fragaria vesca HOM05D005629 ORTHO05D008000 2.5e-06 57.0 47 59.6
TAR622G1261 Trochodendron aralioides HOM05D005629 ORTHO05D008000 2.5e-06 57.0 28 92.9


User provided reference genes

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