Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR135540 Cardamine hirsuta HOM05D002744 ORTHO05D006546 6.7e-191 670.6 364 100.0
Thhalv10016839m.g Eutrema salsugineum HOM05D002744 ORTHO05D006546 5.2e-159 564.7 363 84.8
Sp4g22770 Schrenkiella parvula HOM05D002744 ORTHO05D006546 9.1e-156 553.9 377 78.0
Carub.0004s2268 Capsella rubella HOM05D002744 ORTHO05D006546 4.7e-152 541.6 382 78.0
AL4G38260 Arabidopsis lyrata HOM05D002744 ORTHO05D006546 1.3e-149 533.5 428 69.4
BcaC02g12712 Brassica carinata HOM05D002744 ORTHO05D006546 2.0e-142 509.6 382 76.2
BcaB06g29140 Brassica carinata HOM05D002744 ORTHO05D006546 3.2e-140 502.3 383 73.6
Aa31LG5G19130 Aethionema arabicum HOM05D002744 ORTHO05D006546 9.2e-140 500.7 367 74.1
A05p01680 Brassica napus HOM05D002744 ORTHO05D006546 2.3e-138 496.1 379 73.6
BraA05t19165Z Brassica rapa HOM05D002744 ORTHO05D006546 8.6e-138 494.2 379 72.8
C04p68230 Brassica napus HOM05D002744 ORTHO05D006546 1.6e-131 473.4 380 71.6
BolC4t28327H Brassica oleracea HOM05D002744 ORTHO05D006546 1.6e-131 473.4 380 71.6
BcaC02g07313 Brassica carinata HOM05D002744 ORTHO05D006546 2.7e-131 472.6 378 71.4
BraA04t18540Z Brassica rapa HOM05D002744 ORTHO05D006546 1.3e-130 470.3 380 71.6
A04p30810 Brassica napus HOM05D002744 ORTHO05D006546 1.5e-129 466.8 380 71.3
BolC4t21844H Brassica oleracea HOM05D002744 ORTHO05D006546 2.1e-128 463.0 379 71.0
THA.LOC104824347 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 8.1e-128 461.1 362 71.8
C04p01940 Brassica napus HOM05D002744 ORTHO05D006546 3.1e-127 459.1 378 70.4
THA.LOC104814944 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 4.4e-126 455.3 375 69.3
Glyma.02G230100 Glycine max HOM05D002744 ORTHO05D006546 1.3e-109 400.6 362 60.5
Ciclev10031901m.g Citrus clementina HOM05D002744 ORTHO05D006546 2.2e-109 399.8 368 59.5
Dinv21810 Davidia involucrata HOM05D002744 ORTHO05D006546 8.4e-109 397.9 360 61.1
QL08p064289 Quercus lobata HOM05D002744 ORTHO05D006546 8.4e-109 397.9 357 63.0
AT2G40430 Arabidopsis thaliana HOM05D002744 ORTHO05D006546 1.2e-107 394.0 363 64.5
Thecc.10G007000 Theobroma cacao HOM05D002744 ORTHO05D006546 2.7e-107 392.9 359 61.6
SGA_v2.0_scaffold5G02937 Striga asiatica HOM05D000129 ORTHO05D000144 4.6e-107 392.1 366 58.2
Cc02_g05710 Coffea canephora HOM05D002744 ORTHO05D006546 3.9e-106 389.0 365 60.3
Glyma.14G196400 Glycine max HOM05D002744 ORTHO05D006546 6.6e-106 388.3 365 59.7
Duzib106G0255 Durio zibethinus HOM05D002744 ORTHO05D006546 8.7e-106 387.9 365 60.0
ECA238G3482 Erigeron canadensis HOM05D002744 ORTHO05D006546 1.1e-105 387.5 359 60.4
Actinidia00987 Actinidia chinensis HOM05D002744 ORTHO05D006546 1.5e-105 387.1 357 59.9
MELO3C020109.2 Cucumis melo HOM05D002744 ORTHO05D006546 2.5e-105 386.3 369 61.0
ClCG07G004810 Citrullus lanatus HOM05D002744 ORTHO05D006546 3.3e-105 386.0 369 61.0
Manes.07G139400 Manihot esculenta HOM05D002744 ORTHO05D006546 4.3e-105 385.6 368 62.0
Gohir.D10G253000 Gossypium hirsutum HOM05D002744 ORTHO05D006546 5.6e-105 385.2 357 61.1
Gorai.011G293300 Gossypium raimondii HOM05D002744 ORTHO05D006546 7.3e-105 384.8 357 61.1
MSTRG.5049 Avicennia marina HOM05D002744 ORTHO05D006546 9.6e-105 384.4 367 59.7
ClCG00G004700 Citrullus lanatus HOM05D002744 ORTHO05D006546 3.6e-104 382.5 369 60.4
ClCG06G010230 Citrullus lanatus HOM05D002744 ORTHO05D006546 3.6e-104 382.5 369 60.4
Hma1.2p1_1240F.1_g269620 Hydrangea macrophylla HOM05D002744 ORTHO05D006546 4.8e-104 382.1 362 58.6
HanXRQChr10g0309081 Helianthus annuus HOM05D002744 ORTHO05D006546 6.2e-104 381.7 358 58.4
Ca_06017_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 1.8e-103 380.2 367 57.8
Lsat_1_v5_gn_2_125961 Lactuca sativa HOM05D002744 ORTHO05D006546 1.8e-103 380.2 358 58.9
Prupe.2G259600 Prunus persica HOM05D002744 ORTHO05D006546 1.8e-103 380.2 362 58.6
CsaV3_5G010730 Cucumis sativus L. HOM05D002744 ORTHO05D006546 2.4e-103 379.8 367 59.4
CSS0032617 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 3.1e-103 379.4 363 59.5
Lalb_Chr17g0336941 Lupinus albus HOM05D002744 ORTHO05D006546 4.0e-103 379.0 367 57.2
PGSC0003DMG400024457 Solanum tuberosum HOM05D002744 ORTHO05D006546 4.0e-103 379.0 363 57.6
vmacro09982 Vaccinium macrocarpon HOM05D002744 ORTHO05D006546 4.0e-103 379.0 379 57.5
CiPaw.02G197400 Carya illinoinensis HOM05D002744 ORTHO05D006546 1.5e-102 377.1 366 58.7
RcHm_v2.0_Chr1g0371491 Rosa chinensis HOM05D002744 ORTHO05D006546 1.5e-102 377.1 362 59.9
Sed0016960 Sechium edule HOM05D002744 ORTHO05D006546 1.5e-102 377.1 359 59.1
Haze_17322 Corylus avellana HOM05D002744 ORTHO05D006546 2.0e-102 376.7 388 57.0
LjContig00357g0012394 Lotus japonicus HOM05D002744 ORTHO05D006546 3.4e-102 375.9 362 58.6
Gohir.A10G240800 Gossypium hirsutum HOM05D002744 ORTHO05D006546 4.5e-102 375.6 357 59.4
TAR623G1472 Trochodendron aralioides HOM05D002744 ORTHO05D006546 1.3e-101 374.0 358 57.0
Migut.N01809 Erythranthe guttata HOM05D002744 ORTHO05D006546 2.2e-101 373.2 372 55.4
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 2.2e-101 373.2 358 60.1
Rhsim09G0183300 Rhododendron simsii HOM05D002744 ORTHO05D006546 2.2e-101 373.2 378 57.4
GSVIVG01032722001 Vitis vinifera HOM05D002744 ORTHO05D006546 2.9e-101 372.9 358 57.3
Nitab4.5_0000928g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 4.9e-101 372.1 361 57.1
FvH4_7g25510 Fragaria vesca HOM05D002744 ORTHO05D006546 6.4e-101 371.7 364 58.5
Eucgr.J00153 Eucalyptus grandis HOM05D002744 ORTHO05D006546 1.1e-100 370.9 367 58.9
MBI16_g02735_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D006546 1.1e-100 370.9 365 55.6
Potri.008G075700 Populus trichocarpa HOM05D002744 ORTHO05D006546 1.4e-100 370.5 363 56.7
Sopen02g017560 Solanum pennellii HOM05D002744 ORTHO05D006546 1.4e-100 370.5 365 56.7
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 2.4e-100 369.8 358 59.5
MD07G1229400 Malus domestica HOM05D002744 ORTHO05D006546 2.4e-100 369.8 365 57.3
Solyc02g068420.4 Solanum lycopersicum HOM05D002744 ORTHO05D006546 2.4e-100 369.8 365 56.7
DCAR_011892 Daucus carota HOM05D002744 ORTHO05D006546 3.2e-100 369.4 368 58.4
Nn2g11076 Nelumbo nucifera HOM05D002744 ORTHO05D006546 3.2e-100 369.4 366 55.7
PGSC0003DMG400009431 Solanum tuberosum HOM05D002744 ORTHO05D006546 3.2e-100 369.4 365 56.7
Phvul.008G258300 Phaseolus vulgaris HOM05D002744 ORTHO05D006546 4.2e-100 369.0 365 58.1
VMungo0647G1938 Vigna mungo HOM05D002744 ORTHO05D006546 4.2e-100 369.0 360 58.3
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 2.7e-99 366.3 374 57.0
Lj1C963G12 Lonicera japonica HOM05D002744 ORTHO05D006546 2.7e-99 366.3 356 57.6
Lj1g0011333 Lotus japonicus HOM05D002744 ORTHO05D006546 3.5e-99 365.9 378 56.3
Psat0s1511g0040 Pisum sativum HOM05D002744 ORTHO05D006546 3.5e-99 365.9 364 57.1
PGR044G1552 Punica granatum HOM05D002744 ORTHO05D006546 6.0e-99 365.2 368 57.3
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 2.3e-98 363.2 357 56.9
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 2.3e-98 363.2 374 56.1
HanXRQChr07g0186551 Helianthus annuus HOM05D002744 ORTHO05D006546 2.3e-98 363.2 359 56.8
CANSAT56G2377 Cannabis sativa HOM05D002744 ORTHO05D006546 6.7e-98 361.7 357 56.9
Aqoxy2G00754 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 1.1e-97 360.9 368 56.5
CDE04G1223 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 1.9e-97 360.1 367 53.4
MD01G1161500 Malus domestica HOM05D002744 ORTHO05D006546 4.3e-97 359.0 365 56.4
Sc10g0002810 Simmondsia chinensis HOM05D002744 ORTHO05D006546 2.8e-96 356.3 369 55.0
Nitab4.5_0000263g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 4.8e-96 355.5 399 53.1
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 5.3e-95 352.1 339 59.3
Peaxi162Scf00284g00133 Petunia axillaris HOM05D002744 ORTHO05D006546 9.0e-95 351.3 371 55.8
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 4.5e-94 349.0 357 55.7
HPP92_001733 Vanilla planifolia HOM05D002744 ORTHO05D006546 5.8e-94 348.6 360 54.2
PSO210G7497 Papaver somniferum HOM05D002744 ORTHO05D006546 1.3e-93 347.4 377 52.0
Sabra08G0056300 Salix brachista HOM05D002744 ORTHO05D006546 1.3e-93 347.4 426 49.3
EL10Ac2g04290 Beta vulgaris HOM05D002744 ORTHO05D006546 2.9e-93 346.3 358 55.3
PSO832G1082 Papaver somniferum HOM05D002744 ORTHO05D006546 1.1e-92 344.4 377 51.7
Hund13511 Selenicereus undatus HOM05D002744 ORTHO05D006546 1.4e-92 344.0 364 54.7
Ah.05g176210 Amaranthus hybridus HOM05D002744 ORTHO05D006546 9.3e-92 341.3 368 53.8
Os05g0144200 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D006546 8.7e-90 334.7 386 50.0
TWI56G0434 Tripterygium wilfordii HOM05D002744 ORTHO05D006546 9.6e-89 331.3 360 56.9
arahy.Tifrunner.gnm1.ann1.G9S3DZ Arachis hypogaea HOM05D002744 ORTHO05D006546 2.2e-85 320.1 365 55.9
arahy.Tifrunner.gnm1.ann1.T368MT Arachis hypogaea HOM05D002744 ORTHO05D006546 3.8e-85 319.3 365 55.6
AUR62012335 Chenopodium quinoa HOM05D002744 ORTHO05D006546 8.4e-85 318.2 365 54.0
AUR62022979 Chenopodium quinoa HOM05D002744 ORTHO05D006546 1.1e-84 317.8 364 52.7
Medtr5g083780 Medicago truncatula HOM05D002744 ORTHO05D006546 1.9e-84 317.0 365 53.7
SalBow1G3835 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.9e-84 317.0 346 52.9
Zm00001eb417890 Zea mays HOM05D002744 ORTHO05D006546 2.5e-84 316.6 396 48.5
ATR1127G109 Amborella trichopoda HOM05D002744 ORTHO05D006546 5.5e-84 315.5 345 51.0
TPR.G14721 Trifolium pratense HOM05D002744 ORTHO05D006546 2.7e-83 313.2 365 51.2
SEGI_20256 Sequoiadendron giganteum HOM05D002744 ORTHO05D006546 5.1e-82 308.9 378 47.1
SalBow8G2269 Salvia bowleyana HOM05D002744 ORTHO05D006546 8.2e-80 301.6 368 49.2
SalBow8G4474 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.8e-79 300.4 368 49.2
CDE03G0451 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 3.0e-74 283.1 370 47.3
unitig_27.g25095 Utricularia gibba HOM05D002744 ORTHO05D006546 1.1e-73 281.2 357 48.2
Mapoly0001s0132 Marchantia polymorpha HOM05D002744 ORTHO05D006546 3.7e-64 249.6 392 41.3
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 7.7e-62 241.9 311 51.1
CAN.G39.17 Capsicum annuum HOM05D002744 ORTHO05D006546 2.1e-59 233.8 222 57.2
Oeu026182.1 Olea europaea HOM05D002744 ORTHO05D006546 8.8e-58 228.4 234 56.4
AagrBONN_evm.TU.Sc2ySwM_344.2566 Anthoceros agrestis HOM05D002744 ORTHO05D006546 4.8e-56 222.6 368 39.9
CBR_g88544 Chara braunii HOM05D002744 ORTHO05D006546 1.5e-52 211.1 438 34.9
Ca_27928_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 5.5e-52 209.1 290 45.9
Ca_06977_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 1.7e-48 197.6 191 56.0
SHI18675 Sapria himalayana HOM05D002744 ORTHO05D006546 1.2e-43 181.4 283 48.1
Pp3c22_7700 Physcomitrium patens HOM05D002744 ORTHO05D006546 3.1e-39 166.8 360 32.2
Solyc06g050820.3 Solanum lycopersicum HOM05D002744 ORTHO05D006546 2.0e-33 147.5 160 53.8
CAN.G39.16 Capsicum annuum HOM05D002744 ORTHO05D006546 3.5e-30 136.7 124 58.9
Oeu017758.1 Olea europaea HOM05D002744 ORTHO05D006546 7.8e-30 135.6 120 56.7
MBI16_g06795_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D018022 5.0e-29 132.9 210 41.0
MCO01G055 Micromonas commoda HOM05D002744 ORTHO05D006546 1.3e-16 91.7 219 35.6
HanXRQChr04g0102991 Helianthus annuus HOM05D002744 ORTHO05D006546 2.4e-15 87.4 66 63.6
PRCOL_00000452 Prasinoderma coloniale HOM05D002744 ORTHO05D006546 1.2e-14 85.1 401 23.7
AUR62042571 Chenopodium quinoa HOM05D002744 ORTHO05D006546 2.1e-14 84.3 100 48.0
Atru.chr12.137 Acer truncatum HOM05D002744 ORTHO05D006546 7.8e-14 82.4 52 75.0
Cre07.g348250 Chlamydomonas reinhardtii HOM05D002744 ORTHO05D006546 3.9e-13 80.1 518 23.6
SHI18673 Sapria himalayana HOM05D002744 ORTHO05D006546 5.6e-12 76.3 52 69.2
Lsat_1_v5_gn_5_82241 Lactuca sativa HOM05D002744 ORTHO05D006546 3.6e-11 73.6 45 77.8
Aqoxy466s002 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 4.0e-10 70.1 117 41.0
Cfa025636 Carpinus fangiana HOM05D002744 ORTHO05D006546 2.9e-08 63.9 403 23.3
AL5G22340 Arabidopsis lyrata HOM05D003057 ORTHO05D003904 1.4e-07 61.6 75 53.3
arahy.Tifrunner.gnm1.ann1.LJQ8FI Arachis hypogaea HOM05D002744 ORTHO05D006546 1.6e-06 58.2 65 50.8
arahy.Tifrunner.gnm1.ann1.WF3XAB Arachis hypogaea HOM05D002744 ORTHO05D006546 2.1e-06 57.8 62 54.8
arahy.Tifrunner.gnm1.ann1.XR4RRM Arachis hypogaea HOM05D002744 ORTHO05D006546 7.8e-06 55.8 62 53.2


User provided reference genes

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