Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR125600 Cardamine hirsuta HOM05D006787 ORTHO05D008366 0.0e+00 1276.5 674 100.0
Sp4g14240 Schrenkiella parvula HOM05D006787 ORTHO05D008366 0.0e+00 1129.4 677 87.9
AL4G27180 Arabidopsis lyrata HOM05D006787 ORTHO05D008366 0.0e+00 1123.6 674 87.1
Carub.0004s1319 Capsella rubella HOM05D006787 ORTHO05D008366 0.0e+00 1116.3 675 86.7
Thhalv10016356m.g Eutrema salsugineum HOM05D006787 ORTHO05D008366 0.0e+00 1107.8 674 86.8
AT2G31890 Arabidopsis thaliana HOM05D006787 ORTHO05D008366 0.0e+00 1083.6 674 84.9
BolC3t14481H Brassica oleracea HOM05D006787 ORTHO05D008366 1.2e-302 1042.7 677 83.3
BraA03t11058Z Brassica rapa HOM05D000200 ORTHO05D000262 1.2e-286 989.6 630 84.6
Aa31LG5G5150 Aethionema arabicum HOM05D006787 ORTHO05D008366 2.7e-278 961.8 601 85.0
C03p21010 Brassica napus HOM05D006787 ORTHO05D008366 4.2e-271 937.9 629 81.6
A03p17910 Brassica napus HOM05D006787 ORTHO05D008366 3.0e-269 931.8 649 78.6
THA.LOC104800940 Tarenaya hassleriana HOM05D006787 ORTHO05D008366 1.5e-233 813.1 710 65.8
Dinv33252 Davidia involucrata HOM05D006787 ORTHO05D008366 2.0e-217 759.6 660 62.7
Hma1.2p1_0000F.1_g000320 Hydrangea macrophylla HOM05D006787 ORTHO05D008366 3.5e-217 758.8 579 68.6
Actinidia18386 Actinidia chinensis HOM05D006787 ORTHO05D003440 1.6e-214 750.0 586 69.1
Thecc.05G000800 Theobroma cacao HOM05D006787 ORTHO05D008366 2.7e-214 749.2 580 68.1
CiPaw.02G125400 Carya illinoinensis HOM05D006787 ORTHO05D008366 6.1e-214 748.0 615 66.2
Lju124A5G21 Lonicera japonica HOM05D006787 ORTHO05D008366 8.0e-214 747.7 581 68.2
TWI63G1373 Tripterygium wilfordii HOM05D006787 ORTHO05D008366 1.4e-213 746.9 579 67.4
Manes.01G009700 Manihot esculenta HOM05D006787 ORTHO05D008366 8.8e-213 744.2 585 66.7
TAR636G3644 Trochodendron aralioides HOM05D006787 ORTHO05D008366 6.3e-211 738.0 630 64.4
Haze_11111 Corylus avellana HOM05D006787 ORTHO05D008366 1.4e-210 736.9 566 69.3
Potri.017G001600 Populus trichocarpa HOM05D006787 ORTHO05D008366 1.4e-210 736.9 599 65.4
Prupe.6G118500 Prunus persica HOM05D006787 ORTHO05D008366 1.8e-210 736.5 621 65.5
Nn7g37422 Nelumbo nucifera HOM05D006787 ORTHO05D008366 1.2e-209 733.8 584 66.8
QL10p065815 Quercus lobata HOM05D006787 ORTHO05D008366 2.0e-209 733.0 596 66.8
QL10p064688 Quercus lobata HOM05D006787 ORTHO05D008366 5.0e-208 728.4 596 65.9
Cpa.g.sc9.243 Carica papaya HOM05D006787 ORTHO05D008366 6.1e-206 721.5 576 67.5
Duzib168G0144 Durio zibethinus HOM05D006787 ORTHO05D008366 1.0e-205 720.7 636 62.6
Sabra17G0005700 Salix brachista HOM05D006787 ORTHO05D008366 5.2e-205 718.4 600 64.7
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 4.4e-204 715.3 547 69.5
FAN26G1372 Fragaria x ananassa HOM05D006787 ORTHO05D008366 8.3e-203 711.1 620 64.4
Hund22687 Selenicereus undatus HOM05D006787 ORTHO05D008366 5.4e-202 708.4 588 64.6
MBI10_g27212_MAGBIO Magnolia biondii HOM05D006787 ORTHO05D008366 1.0e-200 704.1 600 63.2
Eucgr.H00246 Eucalyptus grandis HOM05D006787 ORTHO05D008366 6.6e-200 701.4 596 64.3
CANSAT56G3581 Cannabis sativa HOM05D006787 ORTHO05D008366 8.6e-200 701.0 628 62.9
Glyma.07G076000 Glycine max HOM05D006787 ORTHO05D008366 1.5e-199 700.3 581 63.3
COL.COLO4_07294 Corchorus olitorius HOM05D006787 ORTHO05D008366 2.5e-199 699.5 660 58.0
Glyma.03G015700 Glycine max HOM05D006787 ORTHO05D008366 3.3e-199 699.1 625 60.5
CSS0000740 Camellia sinensis var. sinensis HOM05D006787 ORTHO05D008366 3.0e-197 692.6 645 60.0
MSTRG.11562 Avicennia marina HOM05D006787 ORTHO05D008366 4.0e-197 692.2 583 64.5
VMungo0331G0945 Vigna mungo HOM05D006787 ORTHO05D008366 6.8e-197 691.4 624 60.4
RcHm_v2.0_Chr2g0084391 Rosa chinensis HOM05D006787 ORTHO05D008366 3.4e-196 689.1 602 63.6
Gohir.D06G185000 Gossypium hirsutum HOM05D006787 ORTHO05D008366 5.8e-196 688.3 637 58.7
ClCG06G009900 Citrullus lanatus HOM05D006787 ORTHO05D008366 7.5e-196 688.0 607 61.0
Lalb_Chr10g0097341 Lupinus albus HOM05D006787 ORTHO05D008366 2.9e-195 686.0 576 62.7
Lj3g0015930 Lotus japonicus HOM05D006787 ORTHO05D008366 4.1e-194 682.2 577 62.4
Atru.chr3.1966 Acer truncatum HOM05D006787 ORTHO05D008366 1.6e-193 680.2 608 62.2
Ciclev10019183m.g Citrus clementina HOM05D006787 ORTHO05D008366 1.6e-193 680.2 579 63.9
PGR142G3161 Punica granatum HOM05D006787 ORTHO05D008366 2.0e-193 679.9 621 61.0
MD11G1156300 Malus domestica HOM05D006787 ORTHO05D008366 4.6e-193 678.7 599 62.4
FvH4_1g00100 Fragaria vesca HOM05D006787 ORTHO05D008366 3.0e-192 676.0 611 62.5
FAN23G2311 Fragaria x ananassa HOM05D006787 ORTHO05D008366 3.9e-192 675.6 631 62.1
Gohir.A06G175100 Gossypium hirsutum HOM05D006787 ORTHO05D008366 1.1e-191 674.1 598 60.5
Phvul.010G093100 Phaseolus vulgaris HOM05D006787 ORTHO05D008366 3.3e-191 672.5 598 61.0
Ca_25786_v3 Cicer arietinum L. HOM05D006787 ORTHO05D008366 4.3e-191 672.2 573 62.1
Gorai.010G216300 Gossypium raimondii HOM05D006787 ORTHO05D008366 5.6e-191 671.8 637 57.9
PSO357G0106 Papaver somniferum HOM05D006787 ORTHO05D008366 9.5e-191 671.0 611 61.0
Migut.O00275 Erythranthe guttata HOM05D006787 ORTHO05D008366 2.8e-190 669.5 602 60.8
Medtr8g432340 Medicago truncatula HOM05D006787 ORTHO05D008366 4.7e-190 668.7 604 60.4
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 1.4e-189 667.2 621 61.4
EL10Ac3g06180 Beta vulgaris HOM05D006787 ORTHO05D008366 1.8e-189 666.8 587 61.0
AUR62023690 Chenopodium quinoa HOM05D006787 ORTHO05D008366 4.0e-189 665.6 573 62.0
TPR.G1526 Trifolium pratense HOM05D006787 ORTHO05D008366 7.5e-188 661.4 575 62.1
Lsat_1_v5_gn_6_92560 Lactuca sativa HOM05D006787 ORTHO05D008366 8.3e-187 657.9 571 60.6
Hma1.2p1_0000F.1_g000310 Hydrangea macrophylla HOM05D006787 ORTHO05D008366 2.7e-185 652.9 573 62.7
Cc03_g16180 Coffea canephora HOM05D006787 ORTHO05D008366 4.6e-185 652.1 580 61.0
arahy.Tifrunner.gnm1.ann1.RN5NMY Arachis hypogaea HOM05D006787 ORTHO05D008366 7.8e-185 651.4 579 61.3
Sopen12g008290 Solanum pennellii HOM05D006787 ORTHO05D008366 2.3e-184 649.8 583 61.4
SGA_v2.0_scaffold25G10734 Striga asiatica HOM05D006787 ORTHO05D008366 3.9e-184 649.0 594 59.9
arahy.Tifrunner.gnm1.ann1.M1INQM Arachis hypogaea HOM05D006787 ORTHO05D008366 1.1e-183 647.5 579 61.3
CAN.G207.7 Capsicum annuum HOM05D006787 ORTHO05D008366 2.5e-183 646.4 578 61.9
Nitab4.5_0006083g0010 Nicotiana tabacum HOM05D006787 ORTHO05D008366 7.3e-183 644.8 607 59.8
Solyc12g017510.2 Solanum lycopersicum HOM05D006787 ORTHO05D008366 2.8e-182 642.9 580 59.7
Aqoxy4G00084 Aquilegia oxysepala HOM05D006787 ORTHO05D008366 1.5e-180 637.1 579 58.9
CsaV3_2G011300 Cucumis sativus L. HOM05D006787 ORTHO05D008366 1.5e-180 637.1 612 58.7
AUR62002496 Chenopodium quinoa HOM05D006787 ORTHO05D008366 9.9e-180 634.4 466 69.1
MELO3C008513.2 Cucumis melo HOM05D006787 ORTHO05D008366 6.4e-179 631.7 621 57.8
PGSC0003DMG400006459 Solanum tuberosum HOM05D006787 ORTHO05D008366 3.2e-178 629.4 624 56.7
Nitab4.5_0005148g0010 Nicotiana tabacum HOM05D006787 ORTHO05D008366 2.1e-177 626.7 582 60.8
HanXRQChr12g0374641 Helianthus annuus HOM05D006787 ORTHO05D008366 3.5e-177 625.9 576 60.2
Peaxi162Scf00057g01911 Petunia axillaris HOM05D006787 ORTHO05D008366 6.6e-176 621.7 609 57.8
Sc19g0002430 Simmondsia chinensis HOM05D006787 ORTHO05D008366 9.5e-175 617.8 668 54.6
ECA248G2491 Erigeron canadensis HOM05D006787 ORTHO05D008366 3.1e-173 612.8 590 58.8
GSVIVG01038263001 Vitis vinifera HOM05D006787 ORTHO05D008366 4.0e-173 612.5 447 71.6
ATR0743G046 Amborella trichopoda HOM05D006787 ORTHO05D008366 8.9e-173 611.3 607 55.5
SalBow5G4178 Salvia bowleyana HOM05D006787 ORTHO05D008366 5.8e-172 608.6 592 57.1
Psat4g152520 Pisum sativum HOM05D006787 ORTHO05D008366 2.9e-171 606.3 574 56.6
Oeu014980.1 Olea europaea HOM05D006787 ORTHO05D008366 2.3e-168 596.7 524 62.6
HPP92_011440 Vanilla planifolia HOM05D006787 ORTHO05D008366 1.5e-167 594.0 579 56.8
vmacro00728 Vaccinium macrocarpon HOM05D006787 ORTHO05D008366 5.3e-165 585.5 437 70.5
Os03g0425000 Oryza sativa ssp. japonica HOM05D006787 ORTHO05D008366 7.6e-164 581.6 549 57.7
Sed0010252 Sechium edule HOM05D006787 ORTHO05D008366 1.4e-162 577.4 541 59.7
COL.COLO4_16044 Corchorus olitorius HOM05D006787 ORTHO05D008366 7.8e-161 571.6 562 55.2
unitig_22.g5322 Utricularia gibba HOM05D006787 ORTHO05D008366 1.6e-153 547.4 549 57.2
Zm00001eb120920 Zea mays HOM05D006787 ORTHO05D008366 2.6e-148 530.0 538 56.1
TPR.G9807 Trifolium pratense HOM05D006787 ORTHO05D008366 6.4e-147 525.4 574 50.7
BcaB01g04009 Brassica carinata HOM05D006787 ORTHO05D008366 1.3e-144 517.7 285 89.8
SEGI_12983 Sequoiadendron giganteum HOM05D006787 ORTHO05D008366 4.5e-124 449.5 611 45.5
Mapoly0069s0042 Marchantia polymorpha HOM05D006787 ORTHO05D008366 7.5e-79 299.3 634 35.2
Mapoly0276s0001 Marchantia polymorpha HOM05D006787 ORTHO05D008366 7.5e-79 299.3 634 35.2
Pp3c3_28000 Physcomitrium patens HOM05D006787 ORTHO05D008366 3.9e-75 287.0 446 38.1
AagrBONN_evm.TU.Sc2ySwM_344.5468 Anthoceros agrestis HOM05D006787 ORTHO05D008366 2.4e-61 241.1 425 36.0
BcaC04g19536 Brassica carinata HOM05D006787 ORTHO05D008366 3.3e-58 230.7 139 84.9
AagrBONN_evm.TU.Sc2ySwM_344.5464 Anthoceros agrestis HOM05D006787 ORTHO05D008366 2.2e-38 164.9 235 42.6
SMO137G0272 Selaginella moellendorffii HOM05D006787 ORTHO05D008366 1.2e-28 132.5 201 42.8
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 6.1e-20 103.6 113 51.3
CBR_g41140 Chara braunii HOM05D006787 ORTHO05D008366 1.3e-17 95.9 211 31.8
SMO134G0111 Selaginella moellendorffii HOM05D006787 ORTHO05D008366 1.2e-12 79.3 290 28.3
VMungo0720G2947 Vigna mungo HOM05D006787 ORTHO05D008366 7.9e-12 76.6 128 41.4
Cre09.g389541 Chlamydomonas reinhardtii HOM05D006787 ORTHO05D008366 2.3e-11 75.1 112 32.1
SMO137G0070 Selaginella moellendorffii HOM05D006787 ORTHO05D008366 6.7e-11 73.6 99 49.5
SMO137G0174 Selaginella moellendorffii HOM05D066076 ORTHO05D008366 1.1e-10 72.8 212 28.8
Aa31LG5G5140 Aethionema arabicum HOM05D006787 ORTHO05D008366 4.3e-10 70.9 66 63.6
Cre10.g459350 Chlamydomonas reinhardtii HOM05D006787 ORTHO05D008366 7.4e-10 70.1 200 31.0
PRCOL_00001133 Prasinoderma coloniale HOM05D006787 ORTHO05D008366 1.3e-09 69.3 127 33.1
SMO137G0071 Selaginella moellendorffii HOM05D006787 ORTHO05D008366 5.0e-06 57.4 59 39.0


User provided reference genes

Program Settings