Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR102170 Cardamine hirsuta HOM05D000234 ORTHO05D032181 1.1e-47 193.0 96 100.0
AL2G28550 Arabidopsis lyrata HOM05D000234 ORTHO05D000335 5.2e-34 147.5 95 81.1
AT1G69440 Arabidopsis thaliana HOM05D000234 ORTHO05D000335 8.9e-34 146.7 95 80.0
Carub.0002s1604 Capsella rubella HOM05D000234 ORTHO05D000335 2.0e-33 145.6 95 80.0
CARHR062360 Cardamine hirsuta HOM05D000234 ORTHO05D000335 1.7e-32 142.5 95 77.9
BolC2t08710H Brassica oleracea HOM05D000234 ORTHO05D000335 8.3e-32 140.2 95 76.8
Thhalv10018068m.g Eutrema salsugineum HOM05D000234 ORTHO05D000335 1.1e-31 139.8 95 76.8
BcaC03g15083 Brassica carinata HOM05D000234 ORTHO05D000335 9.2e-31 136.7 95 75.8
C02p26360 Brassica napus HOM05D000234 ORTHO05D000335 9.2e-31 136.7 95 75.8
BcaB05g24451 Brassica carinata HOM05D000234 ORTHO05D000335 7.8e-30 133.7 95 73.7
Sp5g24490 Schrenkiella parvula HOM05D000234 ORTHO05D000335 7.8e-30 133.7 95 74.7
BraA02t06644Z Brassica rapa HOM05D000234 ORTHO05D000335 1.0e-29 133.3 95 74.7
BcaB03g15474 Brassica carinata HOM05D000234 ORTHO05D032181 1.3e-29 132.9 92 75.0
A07p31620 Brassica napus HOM05D000234 ORTHO05D000335 1.3e-29 132.9 92 73.9
BraA07t30789Z Brassica rapa HOM05D000234 ORTHO05D000335 1.3e-29 132.9 92 73.9
BcaC08g45891 Brassica carinata HOM05D000234 ORTHO05D000335 8.9e-26 120.2 92 69.6
C06p36960 Brassica napus HOM05D000234 ORTHO05D000335 8.9e-26 120.2 92 69.6
BolC6t38806H Brassica oleracea HOM05D000234 ORTHO05D000335 8.9e-26 120.2 92 69.6
CARHR174640 Cardamine hirsuta HOM05D000234 ORTHO05D032181 4.6e-22 107.8 70 80.0
Haze_11955 Corylus avellana HOM05D000234 ORTHO05D000335 3.9e-21 104.8 98 55.1
Manes.05G106500 Manihot esculenta HOM05D000234 ORTHO05D000335 6.6e-21 104.0 99 52.5
Cpa.g.sc1.68 Carica papaya HOM05D000234 ORTHO05D000335 8.6e-21 103.6 99 52.5
Dinv34098 Davidia involucrata HOM05D000234 ORTHO05D000335 2.5e-20 102.1 95 54.7
GSVIVG01012490001 Vitis vinifera HOM05D000234 ORTHO05D000335 4.3e-20 101.3 93 57.0
Cfa008926 Carpinus fangiana HOM05D000234 ORTHO05D000335 7.3e-20 100.5 98 53.1
TWI79G1549 Tripterygium wilfordii HOM05D000234 ORTHO05D000335 7.3e-20 100.5 99 50.5
Oeu021084.1 Olea europaea HOM05D000234 ORTHO05D000335 9.5e-20 100.1 91 57.1
Aa31LG4G11390 Aethionema arabicum HOM05D000234 ORTHO05D000335 1.2e-19 99.8 98 58.2
arahy.Tifrunner.gnm1.ann1.KK4X3H Arachis hypogaea HOM05D000234 ORTHO05D000335 1.6e-19 99.4 97 51.5
arahy.Tifrunner.gnm1.ann1.YH7FH0 Arachis hypogaea HOM05D000234 ORTHO05D000335 1.6e-19 99.4 97 51.5
Lj2g0015135 Lotus japonicus HOM05D000234 ORTHO05D000335 2.1e-19 99.0 97 50.5
MD13G1068200 Malus domestica HOM05D000234 ORTHO05D000335 2.1e-19 99.0 99 51.5
MD16G1067000 Malus domestica HOM05D000234 ORTHO05D000335 2.1e-19 99.0 99 52.5
COL.COLO4_27969 Corchorus olitorius HOM05D000234 ORTHO05D000335 2.8e-19 98.6 99 50.5
Nn3g17335 Nelumbo nucifera HOM05D000234 ORTHO05D000335 3.6e-19 98.2 95 54.7
Atru.chr11.1715 Acer truncatum HOM05D000234 ORTHO05D000335 4.7e-19 97.8 99 49.5
Glyma.01G053100 Glycine max HOM05D000234 ORTHO05D000335 4.7e-19 97.8 97 51.5
Manes.01G032300 Manihot esculenta HOM05D000234 ORTHO05D000335 4.7e-19 97.8 96 53.1
RcHm_v2.0_Chr4g0439121 Rosa chinensis HOM05D000234 ORTHO05D000335 4.7e-19 97.8 98 52.0
Cc11_g12560 Coffea canephora HOM05D000234 ORTHO05D000335 6.2e-19 97.4 96 53.1
Duzib251G0888 Durio zibethinus HOM05D000234 ORTHO05D000335 6.2e-19 97.4 99 50.5
CiPaw.05G129800 Carya illinoinensis HOM05D000234 ORTHO05D000335 8.1e-19 97.1 98 52.0
Ciclev10030593m.g Citrus clementina HOM05D000234 ORTHO05D000335 8.1e-19 97.1 95 54.7
Gohir.A05G305501 Gossypium hirsutum HOM05D000234 ORTHO05D000335 1.1e-18 96.7 99 50.5
Gohir.D05G305500 Gossypium hirsutum HOM05D000234 ORTHO05D000335 1.1e-18 96.7 99 50.5
Gorai.009G325500 Gossypium raimondii HOM05D000234 ORTHO05D000335 1.1e-18 96.7 99 50.5
QL03p069820 Quercus lobata HOM05D000234 ORTHO05D000335 1.1e-18 96.7 98 53.1
Thecc.02G339200 Theobroma cacao HOM05D000234 ORTHO05D000335 1.1e-18 96.7 99 51.5
CANSAT35G1666 Cannabis sativa HOM05D000234 ORTHO05D000335 1.4e-18 96.3 99 53.5
THA.LOC104822036 Tarenaya hassleriana HOM05D000234 ORTHO05D000335 1.4e-18 96.3 99 60.6
Actinidia31959 Actinidia chinensis HOM05D000234 ORTHO05D000335 1.8e-18 95.9 97 49.5
Phvul.003G046700 Phaseolus vulgaris HOM05D000234 ORTHO05D000335 1.8e-18 95.9 95 55.8
Rhsim12G0078000 Rhododendron simsii HOM05D000234 ORTHO05D000335 1.8e-18 95.9 98 54.1
VMungo1215G0387 Vigna mungo HOM05D000234 ORTHO05D000335 1.8e-18 95.9 97 50.5
Glyma.02G111600 Glycine max HOM05D000234 ORTHO05D000335 2.3e-18 95.5 97 50.5
Sabra10G0124500 Salix brachista HOM05D000234 ORTHO05D000335 2.3e-18 95.5 99 48.5
Gorai.013G089400 Gossypium raimondii HOM05D000234 ORTHO05D000335 3.1e-18 95.1 97 49.5
Potri.010G163800 Populus trichocarpa HOM05D000234 ORTHO05D000335 3.1e-18 95.1 99 49.5
GSVIVG01012529001 Vitis vinifera HOM05D000234 ORTHO05D000335 3.1e-18 95.1 89 55.1
Gohir.D13G078200 Gossypium hirsutum HOM05D000234 ORTHO05D000335 4.0e-18 94.7 97 49.5
Lalb_Chr17g0340891 Lupinus albus HOM05D000234 ORTHO05D000335 4.0e-18 94.7 95 55.8
Sc04g0007850 Simmondsia chinensis HOM05D000234 ORTHO05D000335 4.0e-18 94.7 79 59.5
CANSAT64G1300 Cannabis sativa HOM05D000234 ORTHO05D000335 5.2e-18 94.4 99 50.5
FvH4_4g30730 Fragaria vesca HOM05D000234 ORTHO05D000335 5.2e-18 94.4 98 50.0
FAN07G0537 Fragaria x ananassa HOM05D000234 ORTHO05D000335 5.2e-18 94.4 98 50.0
FAN12G1224 Fragaria x ananassa HOM05D000234 ORTHO05D000335 5.2e-18 94.4 98 50.0
FAN17G1656 Fragaria x ananassa HOM05D000234 ORTHO05D000335 5.2e-18 94.4 98 50.0
FAN17G2305 Fragaria x ananassa HOM05D000234 ORTHO05D000335 5.2e-18 94.4 98 50.0
FAN22G0561 Fragaria x ananassa HOM05D000234 ORTHO05D000335 1.2e-17 93.2 98 50.0
Gohir.A13G078200 Gossypium hirsutum HOM05D000234 ORTHO05D000335 1.5e-17 92.8 97 48.5
TAR006G0003 Trochodendron aralioides HOM05D000234 ORTHO05D000335 1.5e-17 92.8 96 49.0
Nitab4.5_0000720g0070 Nicotiana tabacum HOM05D000234 ORTHO05D000335 2.6e-17 92.0 83 56.6
Peaxi162Scf00097g00118 Petunia axillaris HOM05D000234 ORTHO05D000335 2.6e-17 92.0 99 48.5
Prupe.1G279900 Prunus persica HOM05D000234 ORTHO05D000335 2.6e-17 92.0 90 52.2
vmacro01345 Vaccinium macrocarpon HOM05D000234 ORTHO05D000335 3.4e-17 91.7 95 53.7
Aqoxy3G03497 Aquilegia oxysepala HOM05D000234 ORTHO05D000335 4.4e-17 91.3 95 51.6
Ca_04879_v3 Cicer arietinum L. HOM05D000234 ORTHO05D000335 4.4e-17 91.3 97 50.5
DCAR_030991 Daucus carota HOM05D000234 ORTHO05D000335 4.4e-17 91.3 96 47.9
Lj6A784T67 Lonicera japonica HOM05D000234 ORTHO05D000335 4.4e-17 91.3 93 49.5
CSS0049265 Camellia sinensis var. sinensis HOM05D000234 ORTHO05D000335 5.8e-17 90.9 95 50.5
CSS0049716 Camellia sinensis var. sinensis HOM05D000234 ORTHO05D000335 5.8e-17 90.9 95 50.5
Nn4g23284 Nelumbo nucifera HOM05D000234 ORTHO05D000335 5.8e-17 90.9 83 55.4
PGSC0003DMG400024301 Solanum tuberosum HOM05D000234 ORTHO05D000335 5.8e-17 90.9 99 50.5
Psat2g126320 Pisum sativum HOM05D000234 ORTHO05D000335 7.6e-17 90.5 97 49.5
TAR371G1034 Trochodendron aralioides HOM05D000234 ORTHO05D000335 9.9e-17 90.1 92 51.1
MELO3C012127.2 Cucumis melo HOM05D000234 ORTHO05D000335 1.3e-16 89.7 87 51.7
CsaV3_5G033060 Cucumis sativus L. HOM05D000234 ORTHO05D000335 1.3e-16 89.7 87 51.7
Nitab4.5_0000141g0040 Nicotiana tabacum HOM05D000234 ORTHO05D000335 1.3e-16 89.7 94 48.9
PGR119G1286 Punica granatum HOM05D000234 ORTHO05D000335 1.3e-16 89.7 84 53.6
Solyc01g010970.3 Solanum lycopersicum HOM05D000234 ORTHO05D000335 1.3e-16 89.7 99 50.5
AUR62005852 Chenopodium quinoa HOM05D000234 ORTHO05D000335 1.7e-16 89.4 91 52.7
Eucgr.G02476 Eucalyptus grandis HOM05D000234 ORTHO05D000335 1.7e-16 89.4 84 54.8
TPR.G19945 Trifolium pratense HOM05D000234 ORTHO05D000335 1.7e-16 89.4 97 48.5
Sopen01g006840 Solanum pennellii HOM05D000234 ORTHO05D000335 2.2e-16 89.0 99 49.5
Hund25205 Selenicereus undatus HOM05D000234 ORTHO05D000335 2.9e-16 88.6 85 54.1
CAN.G314.3 Capsicum annuum HOM05D000234 ORTHO05D000335 3.7e-16 88.2 100 49.0
AUR62032845 Chenopodium quinoa HOM05D000234 ORTHO05D000335 3.7e-16 88.2 91 52.7
ClCG05G023990 Citrullus lanatus HOM05D000234 ORTHO05D000335 4.9e-16 87.8 87 50.6
Sed0014424 Sechium edule HOM05D000234 ORTHO05D000335 4.9e-16 87.8 87 51.7
MBI14_g11599_MAGBIO Magnolia biondii HOM05D000234 ORTHO05D000335 8.3e-16 87.0 88 52.3
SalBow8G0909 Salvia bowleyana HOM05D000234 ORTHO05D000335 8.3e-16 87.0 95 52.6
EL10Ac6g13267 Beta vulgaris HOM05D000234 ORTHO05D000335 1.4e-15 86.3 92 48.9
Medtr5g042590 Medicago truncatula HOM05D000234 ORTHO05D000335 3.2e-15 85.1 88 51.1
Ah.02g129350 Amaranthus hybridus HOM05D000234 ORTHO05D000335 1.2e-14 83.2 93 49.5
PSO063G2826 Papaver somniferum HOM05D000234 ORTHO05D000335 1.2e-14 83.2 96 52.1
Migut.L01242 Erythranthe guttata HOM05D000234 ORTHO05D000335 2.7e-14 82.0 84 54.8
unitig_22.g6503 Utricularia gibba HOM05D000234 ORTHO05D000335 6.0e-14 80.9 84 54.8
unitig_8.g3192 Utricularia gibba HOM05D000234 ORTHO05D000335 7.8e-14 80.5 84 53.6
Zm00001eb020470 Zea mays HOM05D000234 ORTHO05D000335 2.3e-13 79.0 83 54.2
CDE04G3411 Ceratophyllum demersum HOM05D000234 ORTHO05D000335 3.0e-13 78.6 90 47.8
ECA234G3164 Erigeron canadensis HOM05D000234 ORTHO05D000335 3.0e-13 78.6 83 48.2
Lsat_1_v5_gn_4_10521 Lactuca sativa HOM05D000234 ORTHO05D000335 3.0e-13 78.6 83 49.4
Os03g0449200 Oryza sativa ssp. japonica HOM05D000234 ORTHO05D000335 3.0e-13 78.6 94 46.8
ATR0730G082 Amborella trichopoda HOM05D000234 ORTHO05D000335 3.9e-13 78.2 107 43.9
CDE02G4258 Ceratophyllum demersum HOM05D000234 ORTHO05D000335 8.6e-13 77.0 89 47.2
SGA_v2.0_scaffold16G07734 Striga asiatica HOM05D000234 ORTHO05D000335 8.6e-13 77.0 95 51.6
SEGI_32962 Sequoiadendron giganteum HOM05D000234 ORTHO05D000335 2.4e-10 68.9 82 48.8
Dinv16691 Davidia involucrata HOM05D000234 ORTHO05D000335 3.1e-10 68.6 53 60.4
HPP92_013412 Vanilla planifolia HOM05D000234 ORTHO05D000335 3.1e-10 68.6 83 47.0
ATR0820G215 Amborella trichopoda HOM05D000234 ORTHO05D000335 1.5e-09 66.2 106 42.5
HanXRQChr10g0308051 Helianthus annuus HOM05D000234 ORTHO05D000335 4.4e-09 64.7 94 39.4


User provided reference genes

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