Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR101770 Cardamine hirsuta HOM05D006330 ORTHO05D008013 2.1e-169 599.0 302 100.0
AT3G25470 Arabidopsis thaliana HOM05D006330 ORTHO05D008013 1.4e-157 559.7 300 92.0
AL3G41590 Arabidopsis lyrata HOM05D006330 ORTHO05D008013 9.9e-156 553.5 300 91.3
Carub.0003s2579 Capsella rubella HOM05D006330 ORTHO05D008013 3.9e-152 541.6 301 89.7
BcaC06g35817 Brassica carinata HOM05D006330 ORTHO05D008013 7.9e-145 517.3 305 85.9
Sp3g22990 Schrenkiella parvula HOM05D006330 ORTHO05D008013 1.0e-144 516.9 303 84.8
Thhalv10002617m.g Eutrema salsugineum HOM05D006330 ORTHO05D008013 1.8e-144 516.2 305 84.6
A07p06930 Brassica napus HOM05D006330 ORTHO05D008013 5.1e-144 514.6 305 85.2
BraA07t28484Z Brassica rapa HOM05D006330 ORTHO05D008013 5.1e-144 514.6 305 85.2
BcaB08g34453 Brassica carinata HOM05D006330 ORTHO05D008013 8.7e-144 513.8 304 84.9
BolC7t41520H Brassica oleracea HOM05D006330 ORTHO05D008013 1.9e-143 512.7 306 85.6
C03p54570 Brassica napus HOM05D006330 ORTHO05D008013 5.6e-143 511.1 303 83.8
BolC3t17744H Brassica oleracea HOM05D006330 ORTHO05D008013 5.6e-143 511.1 303 83.8
C07p10530 Brassica napus HOM05D006330 ORTHO05D008013 1.6e-142 509.6 306 85.3
BraA03t13548Z Brassica rapa HOM05D006330 ORTHO05D008013 8.1e-142 507.3 303 83.8
A03p44190 Brassica napus HOM05D006330 ORTHO05D008013 2.4e-141 505.8 303 83.5
BcaC01g03225 Brassica carinata HOM05D006330 ORTHO05D008013 6.5e-131 471.1 303 79.2
Aa31sc18G40 Aethionema arabicum HOM05D006330 ORTHO05D008013 4.6e-129 464.9 295 80.7
THA.LOC104804704 Tarenaya hassleriana HOM05D006330 ORTHO05D008013 7.7e-124 447.6 309 73.5
BcaB06g26747 Brassica carinata HOM05D006330 ORTHO05D008013 2.3e-120 436.0 306 74.5
Actinidia34530 Actinidia chinensis HOM05D006330 ORTHO05D008013 7.4e-111 404.4 311 68.5
Actinidia23802 Actinidia chinensis HOM05D006330 ORTHO05D008013 9.7e-111 404.1 311 68.2
RcHm_v2.0_Chr6g0282221 Rosa chinensis HOM05D006330 ORTHO05D008013 4.8e-110 401.7 309 67.6
FAN15G1514 Fragaria x ananassa HOM05D006330 ORTHO05D008013 3.5e-108 395.6 310 66.5
Manes.12G055500 Manihot esculenta HOM05D006330 ORTHO05D008013 5.9e-108 394.8 290 70.3
FvH4_2g17480 Fragaria vesca HOM05D006330 ORTHO05D008013 2.9e-107 392.5 310 65.8
GSVIVG01001532001 Vitis vinifera HOM05D006330 ORTHO05D008013 2.9e-107 392.5 289 70.9
Haze_03505 Corylus avellana HOM05D006330 ORTHO05D008013 6.5e-107 391.3 287 70.7
Prupe.8G187200 Prunus persica HOM05D006330 ORTHO05D008013 6.5e-107 391.3 298 67.8
Duzib133G1456 Durio zibethinus HOM05D006330 ORTHO05D008013 1.5e-106 390.2 308 67.2
QL09p047707 Quercus lobata HOM05D006330 ORTHO05D008013 1.5e-106 390.2 282 71.6
Cfa010572 Carpinus fangiana HOM05D006330 ORTHO05D008013 5.5e-106 388.3 284 70.4
Eucgr.K02361 Eucalyptus grandis HOM05D006330 ORTHO05D008013 5.5e-106 388.3 274 70.8
TAR362G0826 Trochodendron aralioides HOM05D006330 ORTHO05D008013 5.5e-106 388.3 300 66.7
Lalb_Chr12g0210221 Lupinus albus HOM05D006330 ORTHO05D008013 7.2e-106 387.9 302 65.9
Gorai.007G161200 Gossypium raimondii HOM05D006330 ORTHO05D008013 1.2e-105 387.1 305 66.6
MBI10_g35385_MAGBIO Magnolia biondii HOM05D006330 ORTHO05D008013 1.2e-105 387.1 296 68.6
Glyma.03G097100 Glycine max HOM05D006330 ORTHO05D008013 3.6e-105 385.6 305 66.9
Gohir.D11G150300 Gossypium hirsutum HOM05D006330 ORTHO05D008013 4.7e-105 385.2 305 66.2
Nn7g37444 Nelumbo nucifera HOM05D006330 ORTHO05D008013 4.7e-105 385.2 301 67.8
PGR044G2230 Punica granatum HOM05D006330 ORTHO05D008013 4.7e-105 385.2 249 77.5
TWI36G1481 Tripterygium wilfordii HOM05D006330 ORTHO05D008013 4.7e-105 385.2 308 65.9
Gohir.A11G143900 Gossypium hirsutum HOM05D006330 ORTHO05D008013 6.1e-105 384.8 305 66.2
Phvul.010G036400 Phaseolus vulgaris HOM05D006330 ORTHO05D008013 6.1e-105 384.8 311 65.0
FAN24G2605 Fragaria x ananassa HOM05D006330 ORTHO05D008013 1.0e-104 384.0 310 65.2
Atru.chr6.3528 Acer truncatum HOM05D006330 ORTHO05D008013 1.8e-104 383.3 309 64.7
MELO3C021126.2 Cucumis melo HOM05D006330 ORTHO05D008013 2.3e-104 382.9 267 72.7
CsaV3_7G026730 Cucumis sativus L. HOM05D006330 ORTHO05D008013 3.0e-104 382.5 267 72.7
EL10Ac5g10587 Beta vulgaris HOM05D006330 ORTHO05D008013 8.8e-104 380.9 283 68.2
Cc01_g15880 Coffea canephora HOM05D006330 ORTHO05D008013 8.8e-104 380.9 292 68.5
CANSAT01G2136 Cannabis sativa HOM05D006330 ORTHO05D008013 1.5e-103 380.2 274 71.9
CiPaw.13G055600 Carya illinoinensis HOM05D006330 ORTHO05D008013 1.5e-103 380.2 282 69.9
ClCG09G008360 Citrullus lanatus HOM05D006330 ORTHO05D008013 2.6e-103 379.4 267 72.3
MD10G1148200 Malus domestica HOM05D006330 ORTHO05D008013 3.3e-103 379.0 313 65.8
Ciclev10015989m.g Citrus clementina HOM05D006330 ORTHO05D008013 4.4e-103 378.6 316 63.6
Potri.014G175500 Populus trichocarpa HOM05D006330 ORTHO05D008013 7.4e-103 377.9 300 68.0
AUR62008069 Chenopodium quinoa HOM05D006330 ORTHO05D008013 9.7e-103 377.5 241 76.8
Psat4g208240 Pisum sativum HOM05D006330 ORTHO05D008013 1.3e-102 377.1 295 67.1
Thecc.01G207700 Theobroma cacao HOM05D006330 ORTHO05D008013 3.7e-102 375.6 293 66.2
Aqoxy2G02383 Aquilegia oxysepala HOM05D006330 ORTHO05D008013 8.2e-102 374.4 249 74.3
Glyma.07G124200 Glycine max HOM05D006330 ORTHO05D008013 8.2e-102 374.4 305 65.6
Sopen09g015980 Solanum pennellii HOM05D006330 ORTHO05D008013 8.2e-102 374.4 271 69.7
VMungo0331G1131 Vigna mungo HOM05D006330 ORTHO05D008013 8.2e-102 374.4 284 68.3
Sed0009827 Sechium edule HOM05D006330 ORTHO05D008013 3.1e-101 372.5 245 76.7
TPR.G17377 Trifolium pratense HOM05D006330 ORTHO05D008013 3.1e-101 372.5 285 67.7
Medtr8g010130 Medicago truncatula HOM05D006330 ORTHO05D008013 4.1e-101 372.1 285 67.4
CDE02G1604 Ceratophyllum demersum HOM05D006330 ORTHO05D008013 2.6e-100 369.4 245 75.1
Ca_23158_v3 Cicer arietinum L. HOM05D006330 ORTHO05D008013 2.6e-100 369.4 269 70.3
Sc05g0001630 Simmondsia chinensis HOM05D006330 ORTHO05D008013 1.7e-99 366.7 289 66.8
Lj2C1112G6 Lonicera japonica HOM05D006330 ORTHO05D008013 3.8e-99 365.5 240 76.2
ATR0743G141 Amborella trichopoda HOM05D006330 ORTHO05D008013 5.0e-99 365.2 246 74.4
arahy.Tifrunner.gnm1.ann1.84ZR2Z Arachis hypogaea HOM05D006330 ORTHO05D008013 5.0e-99 365.2 285 67.0
Rhsim01G0247700 Rhododendron simsii HOM05D006330 ORTHO05D008013 6.5e-99 364.8 242 76.0
MSTRG.21296 Avicennia marina HOM05D006330 ORTHO05D008013 3.2e-98 362.5 282 67.0
arahy.Tifrunner.gnm1.ann1.3RIK1P Arachis hypogaea HOM05D006330 ORTHO05D008013 4.2e-98 362.1 285 67.0
PSO675G8704 Papaver somniferum HOM05D006330 ORTHO05D008013 4.2e-98 362.1 303 63.7
HanXRQChr07g0190561 Helianthus annuus HOM05D006330 ORTHO05D008013 7.2e-98 361.3 278 67.6
Lsat_1_v5_gn_9_16880 Lactuca sativa HOM05D006330 ORTHO05D008013 7.2e-98 361.3 269 68.0
SalBow3G0290 Salvia bowleyana HOM05D006330 ORTHO05D008013 1.6e-97 360.1 278 66.9
HPP92_007591 Vanilla planifolia HOM05D006330 ORTHO05D008013 2.1e-97 359.8 246 71.5
SGA_v2.0_scaffold231G43447 Striga asiatica HOM05D006330 ORTHO05D008013 3.6e-97 359.0 297 64.0
vmacro14689 Vaccinium macrocarpon HOM05D006330 ORTHO05D008013 4.7e-97 358.6 257 71.6
DCAR_004774 Daucus carota HOM05D006330 ORTHO05D008013 8.8e-96 354.4 251 69.7
Os11g0247400 Oryza sativa ssp. japonica HOM05D006330 ORTHO05D008013 1.5e-95 353.6 250 71.2
Migut.D00775 Erythranthe guttata HOM05D006330 ORTHO05D008013 2.0e-95 353.2 292 63.4
Zm00001eb168340 Zea mays HOM05D006330 ORTHO05D008013 2.6e-95 352.8 240 72.1
Hund09482 Selenicereus undatus HOM05D006330 ORTHO05D008013 9.8e-95 350.9 280 66.8
ECA247G1307 Erigeron canadensis HOM05D006330 ORTHO05D008013 2.2e-94 349.7 260 68.1
Pp3c24_1560 Physcomitrium patens HOM05D006330 ORTHO05D008013 4.5e-92 342.0 265 64.5
Hma1.2p1_0161F.1_g071650 Hydrangea macrophylla HOM05D006330 ORTHO05D008013 2.2e-91 339.7 240 72.5
Mapoly0006s0124 Marchantia polymorpha HOM05D006330 ORTHO05D008013 2.9e-91 339.3 240 68.8
CBR_g60689 Chara braunii HOM05D006330 ORTHO05D008013 1.6e-89 333.6 242 69.0
AUR62028646 Chenopodium quinoa HOM05D006330 ORTHO05D008013 4.7e-89 332.0 215 76.7
Sabra14G0134300 Salix brachista HOM05D006330 ORTHO05D008013 6.1e-89 331.6 309 61.8
COL.COLO4_34269 Corchorus olitorius HOM05D006330 ORTHO05D008013 1.0e-88 330.9 219 76.7
Ciclev10018050m.g Citrus clementina HOM05D006330 ORTHO05D008013 1.2e-87 327.4 228 73.7
Lj3g0006219 Lotus japonicus HOM05D006330 ORTHO05D008013 5.0e-83 312.0 253 66.0
SMO141G0006 Selaginella moellendorffii HOM05D006330 ORTHO05D008013 7.2e-82 308.1 253 62.1
CSS0004044 Camellia sinensis var. sinensis HOM05D006330 ORTHO05D008013 3.0e-80 302.8 243 66.7
SMO186G0001 Selaginella moellendorffii HOM05D006330 ORTHO05D008013 6.8e-80 301.6 244 62.3
Nitab4.5_0010469g0010 Nicotiana tabacum HOM05D006330 ORTHO05D008013 1.5e-79 300.4 219 71.2
Nitab4.5_0000038g0340 Nicotiana tabacum HOM05D006330 ORTHO05D008013 2.0e-79 300.1 219 70.8
Dinv28793 Davidia involucrata HOM05D006330 ORTHO05D008013 3.4e-79 299.3 214 71.5
Peaxi162Scf00841g00112 Petunia axillaris HOM05D006330 ORTHO05D008013 3.4e-79 299.3 286 59.1
Oeu049580.1 Olea europaea HOM05D006330 ORTHO05D008013 6.4e-78 295.0 227 67.0
Solyc09g047870.4 Solanum lycopersicum HOM05D006330 ORTHO05D008013 2.7e-76 289.7 210 70.0
MCO07G099 Micromonas commoda HOM05D006330 ORTHO05D008013 9.8e-71 271.2 246 56.5
Cpa.g.sc8.41 Carica papaya HOM05D006330 ORTHO05D008013 2.9e-70 269.6 220 65.5
FAN27G2337 Fragaria x ananassa HOM05D006330 ORTHO05D008013 3.2e-69 266.2 308 50.3
PSO732G0743 Papaver somniferum HOM05D006330 ORTHO05D008013 7.0e-69 265.0 180 75.0
HanXRQChr07g0198371 Helianthus annuus HOM05D006330 ORTHO05D008013 6.4e-62 241.9 177 72.3
Cre10.g428900 Chlamydomonas reinhardtii HOM05D006330 ORTHO05D008013 4.6e-60 235.7 244 52.5
PRCOL_00000451 Prasinoderma coloniale HOM05D006330 ORTHO05D008013 1.6e-57 227.3 292 46.2
CAN.G253.5 Capsicum annuum HOM05D006330 ORTHO05D008013 1.5e-47 194.1 129 74.4
SEGI_37995 Sequoiadendron giganteum HOM05D006330 ORTHO05D008013 7.3e-42 175.3 117 69.2
AagrBONN_evm.TU.Sc2ySwM_368.2380 Anthoceros agrestis HOM05D006330 ORTHO05D008013 1.9e-37 160.6 115 67.8
arahy.Tifrunner.gnm1.ann1.VBTZ6V Arachis hypogaea HOM05D006330 ORTHO05D008013 3.1e-32 143.3 112 63.4
PSO675G8411 Papaver somniferum HOM05D006330 ORTHO05D008013 1.3e-30 137.9 95 68.4
Hma1.2p1_0161F.1_g071660 Hydrangea macrophylla HOM05D006330 ORTHO05D008013 5.1e-27 125.9 82 75.6
Cfa009322 Carpinus fangiana HOM05D006614 ORTHO05D008217 2.2e-22 110.5 86 64.0
CDE04G0367 Ceratophyllum demersum HOM05D006330 ORTHO05D008013 1.9e-21 107.5 85 62.4
BcaB06g26875 Brassica carinata HOM05D006330 ORTHO05D008013 2.5e-18 97.1 64 79.7
VMungo1383G2211 Vigna mungo HOM05D006330 ORTHO05D434633 4.3e-10 69.7 48 70.8
RcHm_v2.0_Chr5g0065021 Rosa chinensis HOM05D006330 ORTHO05D008013 1.0e-06 58.5 46 60.9


User provided reference genes

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