Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR099550 Cardamine hirsuta HOM05D005183 ORTHO05D006684 4.2e-173 611.3 318 100.0
AL3G38300 Arabidopsis lyrata HOM05D005183 ORTHO05D006684 2.2e-153 545.8 318 89.9
Carub.0003s2385 Capsella rubella HOM05D005183 ORTHO05D006684 6.3e-153 544.3 300 92.3
AT3G23620 Arabidopsis thaliana HOM05D005183 ORTHO05D006684 5.0e-150 534.6 318 87.4
Thhalv10021169m.g Eutrema salsugineum HOM05D005183 ORTHO05D006684 1.5e-149 533.1 315 86.7
Aa31LG8G10050 Aethionema arabicum HOM05D005183 ORTHO05D006684 1.7e-145 519.6 315 85.7
BolC1t03963H Brassica oleracea HOM05D005183 ORTHO05D006684 2.2e-145 519.2 299 87.6
BcaB04g20435 Brassica carinata HOM05D005183 ORTHO05D006684 2.8e-145 518.8 315 85.4
A07p08780 Brassica napus HOM05D005183 ORTHO05D006684 2.8e-145 518.8 315 85.1
A01p31440 Brassica napus HOM05D005183 ORTHO05D006684 3.7e-145 518.5 299 87.6
BraA01t03270Z Brassica rapa HOM05D005183 ORTHO05D006684 3.7e-145 518.5 299 87.6
C01p40070 Brassica napus HOM05D005183 ORTHO05D006684 4.9e-145 518.1 299 87.3
BraA07t28669Z Brassica rapa HOM05D005183 ORTHO05D006684 6.3e-145 517.7 315 84.8
BcaC06g35547 Brassica carinata HOM05D005183 ORTHO05D006684 8.3e-145 517.3 315 84.8
BolC7t41857H Brassica oleracea HOM05D005183 ORTHO05D006684 8.3e-145 517.3 315 84.8
BcaB06g26517 Brassica carinata HOM05D005183 ORTHO05D006684 1.4e-144 516.5 315 84.4
C07p13620 Brassica napus HOM05D005183 ORTHO05D006684 2.4e-144 515.8 315 84.4
Sp3g21310 Schrenkiella parvula HOM05D005183 ORTHO05D006684 1.5e-141 506.5 315 83.2
THA.LOC104808666 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 3.2e-136 488.8 315 79.0
COL.COLO4_29815 Corchorus olitorius HOM05D005183 ORTHO05D006684 5.4e-128 461.5 318 73.3
Gohir.A01G209300 Gossypium hirsutum HOM05D005183 ORTHO05D006684 1.2e-127 460.3 318 73.3
Gohir.D01G198400 Gossypium hirsutum HOM05D005183 ORTHO05D006684 7.8e-127 457.6 318 72.6
Gorai.002G242600 Gossypium raimondii HOM05D005183 ORTHO05D006684 1.7e-126 456.4 318 72.6
Duzib128G1222 Durio zibethinus HOM05D005183 ORTHO05D006684 5.0e-126 454.9 318 71.7
Ca_06436_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 3.3e-125 452.2 313 72.8
Thecc.05G081000 Theobroma cacao HOM05D005183 ORTHO05D006684 3.6e-124 448.7 318 71.7
Ciclev10028864m.g Citrus clementina HOM05D005183 ORTHO05D006684 3.1e-123 445.7 313 71.9
THA.LOC104804771 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 3.1e-123 445.7 257 83.7
CiPaw.09G008700 Carya illinoinensis HOM05D005183 ORTHO05D006684 5.2e-123 444.9 313 70.0
Manes.08G020900 Manihot esculenta HOM05D005183 ORTHO05D006684 5.2e-123 444.9 318 70.4
TPR.G28986 Trifolium pratense HOM05D005183 ORTHO05D006684 4.4e-122 441.8 313 70.6
Psat6g078200 Pisum sativum HOM05D005183 ORTHO05D006684 1.3e-121 440.3 313 70.0
GSVIVG01033782001 Vitis vinifera HOM05D005183 ORTHO05D006684 1.3e-121 440.3 318 69.2
Cpa.g.sc111.25 Carica papaya HOM05D005183 ORTHO05D006684 1.7e-121 439.9 313 70.6
PGR004G1465 Punica granatum HOM05D005183 ORTHO05D006684 1.7e-121 439.9 318 70.1
Lalb_Chr06g0173361 Lupinus albus HOM05D005183 ORTHO05D006684 2.2e-121 439.5 313 70.3
Sed0001030 Sechium edule HOM05D005183 ORTHO05D006684 2.9e-121 439.1 299 71.9
Medtr1g061160 Medicago truncatula HOM05D005183 ORTHO05D006684 3.7e-121 438.7 312 71.5
Nn4g24833 Nelumbo nucifera HOM05D005183 ORTHO05D006684 4.9e-121 438.3 318 69.2
Glyma.10G066200 Glycine max HOM05D005183 ORTHO05D006684 2.4e-120 436.0 313 70.6
QL07p040540 Quercus lobata HOM05D005183 ORTHO05D006684 3.2e-120 435.6 313 70.6
ClCG10G019350 Citrullus lanatus HOM05D005183 ORTHO05D006684 5.4e-120 434.9 317 68.5
MELO3C018272.2 Cucumis melo HOM05D005183 ORTHO05D006684 5.4e-120 434.9 317 69.1
Glyma.13G151300 Glycine max HOM05D005183 ORTHO05D006684 7.1e-120 434.5 313 70.0
VMungo0720G1906 Vigna mungo HOM05D005183 ORTHO05D006684 9.2e-120 434.1 315 69.2
Aqoxy2G03309 Aquilegia oxysepala HOM05D005183 ORTHO05D006684 1.2e-119 433.7 318 69.5
Lj5g0003294 Lotus japonicus HOM05D005183 ORTHO05D006684 2.1e-119 433.0 313 70.9
Cfa016373 Carpinus fangiana HOM05D005183 ORTHO05D006684 3.5e-119 432.2 313 68.7
PGSC0003DMG400028174 Solanum tuberosum HOM05D005183 ORTHO05D006684 3.5e-119 432.2 318 68.2
Nn2g14627 Nelumbo nucifera HOM05D005183 ORTHO05D006684 4.6e-119 431.8 318 68.6
CsaV3_3G036840 Cucumis sativus L. HOM05D005183 ORTHO05D006684 1.0e-118 430.6 313 69.0
Sopen10g033080 Solanum pennellii HOM05D005183 ORTHO05D006684 1.0e-118 430.6 318 67.9
Nitab4.5_0002715g0140 Nicotiana tabacum HOM05D005183 ORTHO05D006684 1.3e-118 430.3 316 68.7
Solyc10g083600.2 Solanum lycopersicum HOM05D005183 ORTHO05D006684 1.3e-118 430.3 318 67.9
Phvul.007G223300 Phaseolus vulgaris HOM05D005183 ORTHO05D006684 1.7e-118 429.9 316 69.0
Ah.09g233440 Amaranthus hybridus HOM05D005183 ORTHO05D006684 2.3e-118 429.5 310 68.1
Oeu040539.1 Olea europaea HOM05D005183 ORTHO05D006684 2.3e-118 429.5 318 68.6
Sc20g0006050 Simmondsia chinensis HOM05D005183 ORTHO05D006684 3.0e-118 429.1 316 69.0
Hund27408 Selenicereus undatus HOM05D005183 ORTHO05D006684 3.9e-118 428.7 313 68.1
Cfa008157 Carpinus fangiana HOM05D005183 ORTHO05D006684 8.6e-118 427.6 313 68.7
Peaxi162Scf00110g02022 Petunia axillaris HOM05D005183 ORTHO05D006684 1.1e-117 427.2 318 67.6
Dinv19828 Davidia involucrata HOM05D005183 ORTHO05D006684 1.9e-117 426.4 316 67.7
CAN.G1138.15 Capsicum annuum HOM05D005183 ORTHO05D006684 3.3e-117 425.6 317 66.9
Haze_00122 Corylus avellana HOM05D005183 ORTHO05D006684 3.3e-117 425.6 340 64.4
TWI74G1514 Tripterygium wilfordii HOM05D005183 ORTHO05D006684 3.3e-117 425.6 313 68.1
Actinidia10400 Actinidia chinensis HOM05D005183 ORTHO05D006684 4.3e-117 425.2 309 66.0
Oeu013577.1 Olea europaea HOM05D005183 ORTHO05D006684 7.3e-117 424.5 318 67.3
Eucgr.A01543 Eucalyptus grandis HOM05D005183 ORTHO05D006684 1.6e-116 423.3 313 66.1
Potri.015G088700 Populus trichocarpa HOM05D005183 ORTHO05D006684 2.8e-116 422.5 313 68.7
EL10Ac1g00750 Beta vulgaris HOM05D005183 ORTHO05D006684 3.6e-116 422.2 313 69.0
DCAR_010653 Daucus carota HOM05D005183 ORTHO05D006684 4.7e-116 421.8 313 67.7
Hund17099 Selenicereus undatus HOM05D005183 ORTHO05D006684 4.7e-116 421.8 311 67.8
FvH4_6g17900 Fragaria vesca HOM05D005183 ORTHO05D006684 1.4e-115 420.2 329 65.3
FAN02G4090 Fragaria x ananassa HOM05D005183 ORTHO05D006684 1.4e-115 420.2 329 65.3
FAN14G3711 Fragaria x ananassa HOM05D005183 ORTHO05D006684 1.4e-115 420.2 329 65.3
Hma1.2p1_0611F.1_g188660 Hydrangea macrophylla HOM05D005183 ORTHO05D006684 1.4e-115 420.2 316 65.8
AUR62023398 Chenopodium quinoa HOM05D005183 ORTHO05D006684 2.4e-115 419.5 313 67.1
MSTRG.5807 Avicennia marina HOM05D005183 ORTHO05D006684 3.1e-115 419.1 315 66.3
TAR371G0749 Trochodendron aralioides HOM05D005183 ORTHO05D006684 4.0e-115 418.7 313 67.1
DCAR_029401 Daucus carota HOM05D005183 ORTHO05D006684 5.2e-115 418.3 313 67.4
AUR62013753 Chenopodium quinoa HOM05D005183 ORTHO05D006684 6.8e-115 417.9 313 66.5
CSS0041546 Camellia sinensis var. sinensis HOM05D005183 ORTHO05D006684 8.9e-115 417.5 309 67.6
FAN05G1411 Fragaria x ananassa HOM05D005183 ORTHO05D006684 2.0e-114 416.4 329 64.4
Cc09_g05380 Coffea canephora HOM05D005183 ORTHO05D006684 5.8e-114 414.8 318 65.7
SGA_v2.0_scaffold75G24795 Striga asiatica HOM05D005183 ORTHO05D006684 5.8e-114 414.8 313 66.5
MD12G1018000 Malus domestica HOM05D005183 ORTHO05D006684 9.9e-114 414.1 318 67.3
HanXRQChr02g0051911 Helianthus annuus HOM05D005183 ORTHO05D006684 1.7e-113 413.3 313 68.4
FAN09G1214 Fragaria x ananassa HOM05D005183 ORTHO05D006684 2.9e-113 412.5 339 63.4
unitig_0.g1556 Utricularia gibba HOM05D005183 ORTHO05D006684 3.8e-113 412.1 312 65.1
Migut.J00983 Erythranthe guttata HOM05D005183 ORTHO05D006684 4.9e-113 411.8 313 65.8
SGA_v2.0_scaffold40G15402 Striga asiatica HOM05D005183 ORTHO05D006684 4.9e-113 411.8 313 66.1
Lsat_1_v5_gn_4_35140 Lactuca sativa HOM05D005183 ORTHO05D006684 6.4e-113 411.4 293 69.3
Prupe.7G117100 Prunus persica HOM05D005183 ORTHO05D006684 1.1e-112 410.6 324 66.4
Nitab4.5_0005311g0010 Nicotiana tabacum HOM05D005183 ORTHO05D006684 1.4e-112 410.2 296 69.6
RcHm_v2.0_Chr3g0472151 Rosa chinensis HOM05D005183 ORTHO05D006684 1.4e-112 410.2 329 64.4
Migut.N00918 Erythranthe guttata HOM05D005183 ORTHO05D006684 9.2e-112 407.5 313 65.2
HanXRQChr17g0545251 Helianthus annuus HOM05D005183 ORTHO05D006684 2.1e-111 406.4 305 68.9
PSO478G0399 Papaver somniferum HOM05D005183 ORTHO05D006684 3.5e-111 405.6 316 64.6
TPR.G5686 Trifolium pratense HOM05D005183 ORTHO05D006684 3.5e-111 405.6 290 69.0
PSO017G1745 Papaver somniferum HOM05D005183 ORTHO05D006684 1.3e-110 403.7 316 64.6
ATR0559G171 Amborella trichopoda HOM05D005183 ORTHO05D006684 5.1e-110 401.7 302 66.2
CDE08G0191 Ceratophyllum demersum HOM05D005183 ORTHO05D006684 8.7e-110 401.0 312 64.7
vmacro17863 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 8.7e-110 401.0 336 60.7
Lj3A998T32 Lonicera japonica HOM05D005183 ORTHO05D006684 1.9e-109 399.8 310 65.5
Os01g0513800 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 5.6e-109 398.3 315 65.7
ECA233G2114 Erigeron canadensis HOM05D005183 ORTHO05D006684 7.3e-109 397.9 286 69.2
HPP92_026689 Vanilla planifolia HOM05D005183 ORTHO05D006684 1.2e-108 397.1 312 63.8
Zm00001eb255650 Zea mays HOM05D005183 ORTHO05D006684 1.2e-108 397.1 315 64.8
Zm00001eb292270 Zea mays HOM05D005183 ORTHO05D006684 1.1e-107 394.0 315 64.4
Atru.chr8.1634 Acer truncatum HOM05D005183 ORTHO05D006684 1.4e-107 393.7 268 72.4
Sabra15G0111600 Salix brachista HOM05D005183 ORTHO05D006684 2.6e-106 389.4 313 64.2
HPP92_017999 Vanilla planifolia HOM05D005183 ORTHO05D006684 4.4e-106 388.7 291 65.6
MD14G1016000 Malus domestica HOM05D005183 ORTHO05D006684 4.9e-105 385.2 291 66.3
FAN05G2784 Fragaria x ananassa HOM05D005183 ORTHO05D006684 3.2e-104 382.5 253 71.9
vmacro00782 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 9.3e-104 380.9 309 63.1
Gohir.A01G215950 Gossypium hirsutum HOM05D005183 ORTHO05D006684 3.3e-101 372.5 330 62.1
SEGI_13997 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 1.6e-100 370.2 326 61.0
SEGI_31815 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 3.6e-100 369.0 325 60.9
Pp3c4_19370 Physcomitrium patens HOM05D005183 ORTHO05D006684 4.6e-87 325.5 312 54.5
Actinidia31290 Actinidia chinensis HOM05D005183 ORTHO05D006684 4.8e-84 315.5 309 53.7
SMO367G0957 Selaginella moellendorffii HOM05D005183 ORTHO05D006684 1.1e-83 314.3 320 52.8
Mapoly0098s0050 Marchantia polymorpha HOM05D005183 ORTHO05D006684 4.0e-83 312.4 314 52.5
Lalb_Chr02g0155161 Lupinus albus HOM05D005183 ORTHO05D006684 6.9e-83 311.6 233 66.5
Nitab4.5_0000132g0170 Nicotiana tabacum HOM05D005183 ORTHO05D006684 6.9e-83 311.6 242 65.7
Rhsim11G0063800 Rhododendron simsii HOM05D005183 ORTHO05D006684 1.5e-82 310.5 309 53.4
AagrBONN_evm.TU.Sc2ySwM_344.5577 Anthoceros agrestis HOM05D005183 ORTHO05D006684 3.5e-79 299.3 307 51.5
Ca_28565_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 6.0e-79 298.5 222 68.0
Haze_19538 Corylus avellana HOM05D005183 ORTHO05D006684 2.8e-76 289.7 274 56.2
Pp3c26_6490 Physcomitrium patens HOM05D005183 ORTHO05D006684 1.8e-75 287.0 313 49.8
CBR_g32692 Chara braunii HOM05D012618 ORTHO05D006684 3.8e-73 279.3 275 54.9
Cre03.g197000 Chlamydomonas reinhardtii HOM05D005183 ORTHO05D006684 2.4e-67 260.0 310 46.5
MCO10G188 Micromonas commoda HOM05D005183 ORTHO05D006684 1.3e-60 237.7 295 45.8
Oeu037537.3 Olea europaea HOM05D005183 ORTHO05D006684 7.2e-56 221.9 231 53.2
PRCOL_00004600 Prasinoderma coloniale HOM05D005183 ORTHO05D006684 1.4e-46 191.0 307 39.1
HanXRQChr08g0223931 Helianthus annuus HOM05D005183 ORTHO05D006684 5.5e-40 169.1 185 55.7
Ca_11626_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 5.7e-37 159.1 104 72.1
Lalb_Chr02g0155171 Lupinus albus HOM05D005183 ORTHO05D006684 9.8e-29 131.7 93 69.9
Os05g0506900 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 1.8e-27 127.5 94 67.0
MSTRG.19230 Avicennia marina HOM05D005183 ORTHO05D026969 8.6e-25 118.6 89 66.3
C04p39730 Brassica napus HOM05D005183 ORTHO05D026969 1.8e-22 110.9 90 68.9
BolC4t25545H Brassica oleracea HOM05D005183 ORTHO05D026969 1.8e-22 110.9 90 68.9
MELO3C028534.2 Cucumis melo HOM05D005183 ORTHO05D006684 5.8e-21 105.9 79 67.1
BolC6t35803H Brassica oleracea HOM05D005183 ORTHO05D026969 1.5e-16 91.3 90 58.9
TAR371G0095 Trochodendron aralioides HOM05D005183 ORTHO05D045124 5.2e-14 82.8 118 45.8


User provided reference genes

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