Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR087710 Cardamine hirsuta HOM05D004814 ORTHO05D005778 2.7e-98 362.1 190 100.0
AT3G13120 Arabidopsis thaliana HOM05D004814 ORTHO05D005778 6.8e-86 320.9 196 89.3
AL3G24860 Arabidopsis lyrata HOM05D004814 ORTHO05D005778 8.9e-86 320.5 196 89.3
Carub.0003s1246 Capsella rubella HOM05D004814 ORTHO05D005778 1.1e-80 303.5 198 86.4
Aa31LG8G330 Aethionema arabicum HOM05D004814 ORTHO05D005778 4.3e-80 301.6 199 83.4
Thhalv10021566m.g Eutrema salsugineum HOM05D004814 ORTHO05D005778 8.9e-78 293.9 200 82.0
BcaB06g25486 Brassica carinata HOM05D004814 ORTHO05D005778 6.4e-76 287.7 198 83.3
A03p38040 Brassica napus HOM05D004814 ORTHO05D005778 6.4e-76 287.7 194 84.5
Sp3g11290 Schrenkiella parvula HOM05D004814 ORTHO05D005778 8.3e-76 287.3 201 81.6
BolC5t34154H Brassica oleracea HOM05D004814 ORTHO05D005778 1.4e-75 286.6 201 81.6
BcaNung05270 Brassica carinata HOM05D004814 ORTHO05D005778 1.9e-75 286.2 197 81.7
A01p40420 Brassica napus HOM05D004814 ORTHO05D005778 1.9e-75 286.2 198 82.3
C03p46130 Brassica napus HOM05D004814 ORTHO05D005778 1.9e-75 286.2 193 80.8
BraA01t04077Z Brassica rapa HOM05D004814 ORTHO05D005778 1.9e-75 286.2 198 82.3
BcaC01g04010 Brassica carinata HOM05D004814 ORTHO05D005778 2.4e-75 285.8 193 80.3
BolC3t16886H Brassica oleracea HOM05D004814 ORTHO05D005778 2.4e-75 285.8 193 80.3
BcaC05g29209 Brassica carinata HOM05D004814 ORTHO05D005778 3.2e-75 285.4 201 81.6
C05p54820 Brassica napus HOM05D004814 ORTHO05D005778 3.2e-75 285.4 201 81.6
Aa31LG10G250 Aethionema arabicum HOM05D004814 ORTHO05D005778 1.6e-74 283.1 200 80.0
BraA03t12957Z Brassica rapa HOM05D004814 ORTHO05D005778 1.0e-73 280.4 202 81.2
BraA05t22442Z Brassica rapa HOM05D004814 ORTHO05D005778 1.1e-72 276.9 201 80.6
A05p36420 Brassica napus HOM05D004814 ORTHO05D005778 1.5e-72 276.6 201 79.6
THA.LOC104815700 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 3.6e-71 271.9 200 75.5
THA.LOC104822735 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 3.6e-71 271.9 197 76.6
THA.LOC104810287 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 5.8e-69 264.6 197 75.6
CANSAT11G0174 Cannabis sativa HOM05D004814 ORTHO05D005778 6.0e-66 254.6 201 70.6
QL08p004842 Quercus lobata HOM05D004814 ORTHO05D005778 1.3e-65 253.4 207 67.6
Gorai.007G310400 Gossypium raimondii HOM05D004814 ORTHO05D005778 6.6e-65 251.1 198 72.7
Gohir.D11G287000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 1.1e-64 250.4 198 72.7
Gohir.A11G276900 Gossypium hirsutum HOM05D004814 ORTHO05D005778 3.3e-64 248.8 198 71.7
Thecc.07G016800 Theobroma cacao HOM05D004814 ORTHO05D005778 9.6e-64 247.3 197 71.1
CiPaw.12G136400 Carya illinoinensis HOM05D004814 ORTHO05D005778 1.6e-63 246.5 206 67.5
FvH4_3g29500 Fragaria vesca HOM05D004814 ORTHO05D005778 1.6e-63 246.5 197 71.6
FAN11G3417 Fragaria x ananassa HOM05D004814 ORTHO05D005778 1.6e-63 246.5 197 71.6
Manes.03G139872 Manihot esculenta HOM05D004814 ORTHO05D005778 1.6e-63 246.5 210 67.1
FAN21G1289 Fragaria x ananassa HOM05D004814 ORTHO05D005778 2.1e-63 246.1 197 71.6
FAN16G2593 Fragaria x ananassa HOM05D004814 ORTHO05D005778 3.6e-63 245.4 197 71.1
Manes.15G061900 Manihot esculenta HOM05D004814 ORTHO05D005778 3.6e-63 245.4 213 67.1
RcHm_v2.0_Chr5g0054381 Rosa chinensis HOM05D004814 ORTHO05D005778 4.7e-63 245.0 198 71.7
Cfa020215 Carpinus fangiana HOM05D004814 ORTHO05D005778 6.2e-63 244.6 206 67.0
DCAR_013223 Daucus carota HOM05D004814 ORTHO05D005778 6.2e-63 244.6 190 71.6
A01p40680 Brassica napus HOM05D004814 ORTHO05D005778 1.4e-62 243.4 192 74.5
FAN25G3790 Fragaria x ananassa HOM05D004814 ORTHO05D005778 1.4e-62 243.4 196 71.4
Atru.chr2.3664 Acer truncatum HOM05D004814 ORTHO05D005778 1.8e-62 243.0 192 71.4
Dinv10318 Davidia involucrata HOM05D004814 ORTHO05D005778 1.2e-61 240.4 200 68.5
Gohir.A01G090000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 2.6e-61 239.2 194 70.6
TWI39G1010 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 2.6e-61 239.2 206 67.5
Gohir.D01G075300 Gossypium hirsutum HOM05D004814 ORTHO05D005778 3.4e-61 238.8 194 70.1
Gorai.002G098500 Gossypium raimondii HOM05D004814 ORTHO05D005778 3.4e-61 238.8 194 70.1
Duzib213G0234 Durio zibethinus HOM05D004814 ORTHO05D005778 5.8e-61 238.0 193 69.9
Dinv40842 Davidia involucrata HOM05D004814 ORTHO05D005778 7.6e-61 237.7 202 69.3
TWI38G0785 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 9.9e-61 237.3 207 68.1
Potri.001G365600 Populus trichocarpa HOM05D004814 ORTHO05D005778 1.3e-60 236.9 203 67.0
ClCG09G021040 Citrullus lanatus HOM05D004814 ORTHO05D005778 2.2e-60 236.1 213 64.8
Haze_09803 Corylus avellana HOM05D004814 ORTHO05D005778 2.2e-60 236.1 192 67.7
MELO3C024899.2 Cucumis melo HOM05D004814 ORTHO05D005778 2.2e-60 236.1 209 65.6
PGR031G1774 Punica granatum HOM05D004814 ORTHO05D005778 2.9e-60 235.7 194 69.6
CsaV3_7G018640 Cucumis sativus L. HOM05D004814 ORTHO05D005778 4.9e-60 235.0 209 66.0
MD03G1187000 Malus domestica HOM05D004814 ORTHO05D005778 4.9e-60 235.0 200 67.5
EL10Ac4g07605 Beta vulgaris HOM05D004814 ORTHO05D005778 1.1e-59 233.8 197 68.0
Oeu049351.1 Olea europaea HOM05D004814 ORTHO05D005778 1.1e-59 233.8 193 70.5
MSTRG.14478 Avicennia marina HOM05D004814 ORTHO05D005778 1.4e-59 233.4 190 68.4
Potri.011G092800 Populus trichocarpa HOM05D004814 ORTHO05D005778 2.4e-59 232.6 207 65.2
Ah.04g166490 Amaranthus hybridus HOM05D004814 ORTHO05D005778 3.2e-59 232.3 191 67.5
AUR62017069 Chenopodium quinoa HOM05D004814 ORTHO05D005778 3.2e-59 232.3 200 68.0
COL.COLO4_09806 Corchorus olitorius HOM05D004814 ORTHO05D005778 3.2e-59 232.3 193 66.8
AUR62036421 Chenopodium quinoa HOM05D004814 ORTHO05D005778 5.4e-59 231.5 200 67.0
AUR62036427 Chenopodium quinoa HOM05D004814 ORTHO05D005778 5.4e-59 231.5 200 67.0
AUR62040646 Chenopodium quinoa HOM05D004814 ORTHO05D005778 5.4e-59 231.5 200 67.0
GSVIVG01014640001 Vitis vinifera HOM05D004814 ORTHO05D005778 7.1e-59 231.1 201 66.7
C01p51960 Brassica napus HOM05D004814 ORTHO05D005778 1.2e-58 230.3 191 69.6
Hma1.2p1_0889F.1_g232870 Hydrangea macrophylla HOM05D004814 ORTHO05D005778 1.6e-58 229.9 211 62.6
vmacro22713 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 2.1e-58 229.6 202 65.3
Lsat_1_v5_gn_9_90400 Lactuca sativa HOM05D004814 ORTHO05D005778 2.7e-58 229.2 194 67.0
Ah.06g181280 Amaranthus hybridus HOM05D004814 ORTHO05D005778 3.5e-58 228.8 192 67.2
arahy.Tifrunner.gnm1.ann1.X98J9H Arachis hypogaea HOM05D004814 ORTHO05D005778 6.0e-58 228.0 207 64.7
CAN.G492.31 Capsicum annuum HOM05D004814 ORTHO05D005778 6.0e-58 228.0 193 67.9
PGSC0003DMG400014378 Solanum tuberosum HOM05D004814 ORTHO05D005778 6.0e-58 228.0 192 67.2
Ciclev10009615m.g Citrus clementina HOM05D004814 ORTHO05D005778 7.8e-58 227.6 191 67.5
Sabra16G0239200 Salix brachista HOM05D004814 ORTHO05D005778 7.8e-58 227.6 211 64.5
Sopen10g001990 Solanum pennellii HOM05D004814 ORTHO05D005778 7.8e-58 227.6 192 67.2
Nitab4.5_0006756g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 1.0e-57 227.3 194 67.5
Sabra11G0087000 Salix brachista HOM05D004814 ORTHO05D005778 1.0e-57 227.3 209 64.1
arahy.Tifrunner.gnm1.ann1.0CA1AM Arachis hypogaea HOM05D004814 ORTHO05D005778 1.3e-57 226.9 208 64.4
Oeu057089.1 Olea europaea HOM05D004814 ORTHO05D005778 1.3e-57 226.9 191 68.1
Glyma.08G327500 Glycine max HOM05D004814 ORTHO05D005778 1.7e-57 226.5 216 63.9
Glyma.18G079900 Glycine max HOM05D004814 ORTHO05D005778 1.7e-57 226.5 201 67.7
arahy.Tifrunner.gnm1.ann1.CWZH2K Arachis hypogaea HOM05D004814 ORTHO05D005778 2.3e-57 226.1 208 64.4
CSS0025876 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 2.3e-57 226.1 201 68.2
Sed0017349 Sechium edule HOM05D004814 ORTHO05D005778 2.3e-57 226.1 212 64.2
Sc16g0007970 Simmondsia chinensis HOM05D004814 ORTHO05D005778 3.9e-57 225.3 198 65.7
Nitab4.5_0003491g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 6.6e-57 224.6 194 67.0
arahy.Tifrunner.gnm1.ann1.RG8M6K Arachis hypogaea HOM05D004814 ORTHO05D005778 8.7e-57 224.2 209 64.1
ECA240G4731 Erigeron canadensis HOM05D001580 ORTHO05D001517 8.7e-57 224.2 144 78.5
Prupe.4G239600 Prunus persica HOM05D004814 ORTHO05D005778 8.7e-57 224.2 201 64.2
Solyc10g006030.3 Solanum lycopersicum HOM05D004814 ORTHO05D005778 8.7e-57 224.2 190 68.4
Actinidia30418 Actinidia chinensis HOM05D004814 ORTHO05D005778 1.1e-56 223.8 202 66.8
Peaxi162Scf00900g00010 Petunia axillaris HOM05D004814 ORTHO05D005778 1.5e-56 223.4 163 73.6
Actinidia05019 Actinidia chinensis HOM05D004814 ORTHO05D005778 1.9e-56 223.0 202 66.8
HanXRQChr03g0061321 Helianthus annuus HOM05D004814 ORTHO05D005778 1.9e-56 223.0 194 66.0
Ca_20138_v3 Cicer arietinum L. HOM05D004814 ORTHO05D005778 2.5e-56 222.6 202 65.3
Cc05_g14790 Coffea canephora HOM05D004814 ORTHO05D005778 3.3e-56 222.2 193 64.8
Nn1g03216 Nelumbo nucifera HOM05D004814 ORTHO05D005778 3.3e-56 222.2 207 62.8
Rhsim06G0227300 Rhododendron simsii HOM05D004814 ORTHO05D005778 3.3e-56 222.2 202 63.9
MD11G1202000 Malus domestica HOM05D004814 ORTHO05D005778 5.6e-56 221.5 208 63.9
PSO541G0969 Papaver somniferum HOM05D004814 ORTHO05D005778 5.6e-56 221.5 203 63.1
HanXRQChr13g0408121 Helianthus annuus HOM05D004814 ORTHO05D005778 7.3e-56 221.1 192 66.7
Lalb_Chr05g0211691 Lupinus albus HOM05D004814 ORTHO05D005778 7.3e-56 221.1 207 62.8
TAR626G1431 Trochodendron aralioides HOM05D004814 ORTHO05D005778 9.6e-56 220.7 206 65.5
PSO675G8482 Papaver somniferum HOM05D004814 ORTHO05D005778 1.3e-55 220.3 203 62.1
Eucgr.F03697 Eucalyptus grandis HOM05D004814 ORTHO05D005778 3.6e-55 218.8 194 66.5
Phvul.006G055300 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 3.6e-55 218.8 219 62.6
Aqoxy4G02247 Aquilegia oxysepala HOM05D004814 ORTHO05D005778 8.1e-55 217.6 198 63.6
unitig_62.g23297 Utricularia gibba HOM05D004814 ORTHO05D005778 1.1e-54 217.2 173 69.4
Phvul.001G030600 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 2.4e-54 216.1 219 61.6
Hund01909 Selenicereus undatus HOM05D004814 ORTHO05D005778 3.1e-54 215.7 193 62.2
TAR629G3287 Trochodendron aralioides HOM05D004814 ORTHO05D005778 6.9e-54 214.5 203 64.0
SGA_v2.0_scaffold8G04398 Striga asiatica HOM05D004814 ORTHO05D005778 1.2e-53 213.8 192 64.6
Medtr3g058430 Medicago truncatula HOM05D004814 ORTHO05D005778 1.5e-53 213.4 194 63.4
Cpa.g.sc12.175 Carica papaya HOM05D004814 ORTHO05D005778 4.4e-53 211.8 104 98.1
TPR.G30737 Trifolium pratense HOM05D004814 ORTHO05D005778 4.4e-53 211.8 207 60.4
CSS0019029 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 7.6e-53 211.1 115 90.4
Lj1P888T30 Lonicera japonica HOM05D004814 ORTHO05D005778 2.2e-52 209.5 104 97.1
VMungo0248G0001 Vigna mungo HOM05D004814 ORTHO05D005778 3.8e-52 208.8 104 96.2
BraA01t04102Z Brassica rapa HOM05D004814 ORTHO05D005778 1.1e-51 207.2 104 97.1
CDE10G1086 Ceratophyllum demersum HOM05D004814 ORTHO05D005778 1.1e-51 207.2 111 89.2
ATR0624G087 Amborella trichopoda HOM05D004814 ORTHO05D005778 1.9e-51 206.5 104 95.2
Psat5g170120 Pisum sativum HOM05D004814 ORTHO05D005778 2.4e-51 206.1 200 61.5
Zm00001eb008100 Zea mays HOM05D004814 ORTHO05D005778 5.4e-51 204.9 199 62.3
Os03g0196800 Oryza sativa ssp. japonica HOM05D004814 ORTHO05D005778 9.3e-51 204.1 190 59.5
Zm00001eb401060 Zea mays HOM05D004814 ORTHO05D005778 3.5e-50 202.2 196 60.7
Actinidia05024 Actinidia chinensis HOM05D004814 ORTHO05D005778 6.0e-50 201.4 191 62.8
QL05p065674 Quercus lobata HOM05D004814 ORTHO05D005778 3.0e-49 199.1 112 88.4
HPP92_020399 Vanilla planifolia HOM05D004814 ORTHO05D005778 3.0e-49 199.1 192 63.0
QL05p065593 Quercus lobata HOM05D004814 ORTHO05D005778 1.4e-46 190.3 103 92.2
MBI19_g45743_MAGBIO Magnolia biondii HOM05D004814 ORTHO05D005778 2.4e-46 189.5 100 89.0
AagrBONN_evm.TU.Sc2ySwM_117.1321 Anthoceros agrestis HOM05D004814 ORTHO05D005778 9.3e-43 177.6 133 68.4
PSO832G2117 Papaver somniferum HOM05D004814 ORTHO05D005778 9.3e-43 177.6 205 55.1
Pp3c24_19230 Physcomitrium patens HOM05D004814 ORTHO05D005778 2.1e-42 176.4 168 57.7
Pp3c20_8830 Physcomitrium patens HOM05D004814 ORTHO05D005778 6.7e-41 171.4 190 54.7
Pp3c8_18990 Physcomitrium patens HOM05D004814 ORTHO05D005778 1.5e-40 170.2 178 55.1
Mapoly0009s0107 Marchantia polymorpha HOM05D004814 ORTHO05D005778 3.3e-40 169.1 194 53.6
SEGI_32296 Sequoiadendron giganteum HOM05D004814 ORTHO05D005778 2.6e-37 159.5 101 75.2
CBR_g19640 Chara braunii HOM05D004814 ORTHO05D005778 4.5e-37 158.7 156 54.5
MSTRG.13015 Avicennia marina HOM05D004814 ORTHO05D005778 1.6e-34 150.2 147 59.2
SMO228G0012 Selaginella moellendorffii HOM05D004814 ORTHO05D005778 6.7e-33 144.8 115 60.0
MCO07G521 Micromonas commoda HOM05D004814 ORTHO05D005778 5.3e-30 135.2 121 55.4
PRCOL_00000430 Prasinoderma coloniale HOM05D004814 ORTHO05D005778 1.3e-23 114.0 100 52.0
Cre03.g195650 Chlamydomonas reinhardtii HOM05D004814 ORTHO05D005778 2.2e-20 103.2 135 43.0
BolC1t05144H Brassica oleracea HOM05D004814 ORTHO05D005778 7.4e-16 88.2 104 62.5
vmacro17432 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 8.8e-09 64.7 191 35.6


User provided reference genes

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