Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR083870 Cardamine hirsuta HOM05D006953 ORTHO05D008556 1.2e-32 142.5 71 100.0
BcaB01g06171 Brassica carinata HOM05D001365 ORTHO05D001291 6.4e-13 77.0 42 88.1
BcaB01g06189 Brassica carinata HOM05D001365 ORTHO05D001291 6.4e-13 77.0 42 88.1
C03p01030 Brassica napus HOM05D006953 ORTHO05D008556 6.4e-13 77.0 42 88.1
BolC3t12664H Brassica oleracea HOM05D006953 ORTHO05D008556 6.4e-13 77.0 42 88.1
Thhalv10021844m.g Eutrema salsugineum HOM05D006953 ORTHO05D008556 1.9e-12 75.5 59 67.8
A03p00780 Brassica napus HOM05D006953 ORTHO05D008556 2.4e-12 75.1 42 85.7
BraA03t09462Z Brassica rapa HOM05D001365 ORTHO05D001291 2.4e-12 75.1 42 85.7
Os07g0620500 Oryza sativa ssp. japonica HOM05D006953 ORTHO05D008556 2.4e-12 75.1 39 87.2
AL3G20640 Arabidopsis lyrata HOM05D006953 ORTHO05D008556 1.2e-11 72.8 36 97.2
AT3G09455 Arabidopsis thaliana HOM05D006953 ORTHO05D008556 1.2e-11 72.8 36 97.2
Carub.0003s0856 Capsella rubella HOM05D006953 ORTHO05D008556 1.2e-11 72.8 36 97.2
Actinidia02894 Actinidia chinensis HOM05D005343 ORTHO05D008556 2.1e-11 72.0 42 78.6
Manes.10G032302 Manihot esculenta HOM05D006953 ORTHO05D008556 2.1e-11 72.0 36 88.9
GSVIVG01034200001 Vitis vinifera HOM05D006953 ORTHO05D008556 2.1e-11 72.0 56 64.3
AT5G02502 Arabidopsis thaliana HOM05D006953 ORTHO05D008556 2.7e-11 71.6 36 94.4
AL6G11750 Arabidopsis lyrata HOM05D006953 ORTHO05D008556 3.5e-11 71.2 36 91.7
MELO3C030371.2 Cucumis melo HOM05D006953 ORTHO05D008556 3.5e-11 71.2 40 77.5
THA.LOC104816283 Tarenaya hassleriana HOM05D006953 ORTHO05D008556 3.5e-11 71.2 35 94.3
FAN14G5692 Fragaria x ananassa HOM05D006953 ORTHO05D008556 4.6e-11 70.9 37 86.5
Hund17592 Selenicereus undatus HOM05D006953 ORTHO05D008556 4.6e-11 70.9 36 88.9
BolC9t60140H Brassica oleracea HOM05D006953 ORTHO05D008556 6.0e-11 70.5 49 75.5
Actinidia13138 Actinidia chinensis HOM05D006953 ORTHO05D008556 7.8e-11 70.1 70 51.4
FAN09G0966 Fragaria x ananassa HOM05D006953 ORTHO05D008556 7.8e-11 70.1 36 88.9
C04p60710 Brassica napus HOM05D006953 ORTHO05D008556 1.0e-10 69.7 36 91.7
Manes.08G128230 Manihot esculenta HOM05D006953 ORTHO05D008556 1.0e-10 69.7 35 88.6
Potri.010G207100 Populus trichocarpa HOM05D006953 ORTHO05D008556 1.0e-10 69.7 35 88.6
PGR044G1841 Punica granatum HOM05D006953 ORTHO05D008556 1.0e-10 69.7 35 88.6
Glyma.03G171300 Glycine max HOM05D006953 ORTHO05D008556 1.3e-10 69.3 35 88.6
Glyma.19G172400 Glycine max HOM05D006953 ORTHO05D008556 1.3e-10 69.3 35 88.6
Phvul.005G001900 Phaseolus vulgaris HOM05D006953 ORTHO05D008556 1.3e-10 69.3 35 88.6
TWI15G0277 Tripterygium wilfordii HOM05D006953 ORTHO05D008556 1.7e-10 68.9 35 91.4
Gohir.A09G157400 Gossypium hirsutum HOM05D006953 ORTHO05D008556 2.3e-10 68.6 35 88.6
Gohir.D09G152700 Gossypium hirsutum HOM05D006953 ORTHO05D008556 2.3e-10 68.6 35 88.6
Gorai.006G174200 Gossypium raimondii HOM05D006953 ORTHO05D008556 2.3e-10 68.6 35 88.6
BolC4t27560H Brassica oleracea HOM05D006953 ORTHO05D008556 3.0e-10 68.2 36 88.9
Manes.09G090100 Manihot esculenta HOM05D006953 ORTHO05D008556 3.0e-10 68.2 35 88.6
arahy.Tifrunner.gnm1.ann1.NW0172 Arachis hypogaea HOM05D003758 ORTHO05D008556 3.9e-10 67.8 38 81.6
CAN.G97.41 Capsicum annuum HOM05D006953 ORTHO05D008556 3.9e-10 67.8 36 80.6
CiPaw.10G144400 Carya illinoinensis HOM05D006953 ORTHO05D008556 3.9e-10 67.8 35 85.7
ECA236G4263 Erigeron canadensis HOM05D006953 ORTHO05D008556 3.9e-10 67.8 43 74.4
Nn6g34196 Nelumbo nucifera HOM05D006953 ORTHO05D008556 3.9e-10 67.8 35 85.7
Potri.008G053300 Populus trichocarpa HOM05D006953 ORTHO05D008556 3.9e-10 67.8 35 85.7
Cc06_g02830 Coffea canephora HOM05D006953 ORTHO05D008556 5.1e-10 67.4 35 85.7
COL.COLO4_14834 Corchorus olitorius HOM05D000248 ORTHO05D000146 5.1e-10 67.4 34 88.2
Duzib128G1377 Durio zibethinus HOM05D006953 ORTHO05D008556 5.1e-10 67.4 35 85.7
Prupe.6G252200 Prunus persica HOM05D006953 ORTHO05D008556 5.1e-10 67.4 35 85.7
SGA_v2.0_scaffold27G11723 Striga asiatica HOM05D006953 ORTHO05D008556 5.1e-10 67.4 35 85.7
Thecc.05G042200 Theobroma cacao HOM05D006953 ORTHO05D008556 5.1e-10 67.4 35 85.7
TWI74G1054 Tripterygium wilfordii HOM05D006953 ORTHO05D008556 5.1e-10 67.4 35 85.7
CANSAT56G0829 Cannabis sativa HOM05D006953 ORTHO05D008556 6.6e-10 67.0 35 85.7
CANSAT56G2326 Cannabis sativa HOM05D006953 ORTHO05D008556 6.6e-10 67.0 35 85.7
Gohir.A01G223600 Gossypium hirsutum HOM05D006953 ORTHO05D008556 8.6e-10 66.6 35 85.7
Gohir.D01G212800 Gossypium hirsutum HOM05D006953 ORTHO05D008556 8.6e-10 66.6 35 85.7
Gorai.002G258800 Gossypium raimondii HOM05D006953 ORTHO05D008556 8.6e-10 66.6 35 85.7
MD04G1125200 Malus domestica HOM05D006953 ORTHO05D008556 8.6e-10 66.6 35 85.7
Os03g0392050 Oryza sativa ssp. japonica HOM05D006953 ORTHO05D008556 1.1e-09 66.2 35 85.7
Migut.A00495 Erythranthe guttata HOM05D006953 ORTHO05D008556 1.5e-09 65.9 35 82.9
Medtr7g099720 Medicago truncatula HOM05D006953 ORTHO05D008556 1.5e-09 65.9 36 77.8
vmacro20134 Vaccinium macrocarpon HOM05D006953 ORTHO05D008556 1.5e-09 65.9 39 74.4
Duzib106G1537 Durio zibethinus HOM05D006953 ORTHO05D008556 2.5e-09 65.1 35 80.0
Potri.008G053200 Populus trichocarpa HOM05D006953 ORTHO05D008556 2.5e-09 65.1 35 82.9
EL10Ac8g18952 Beta vulgaris HOM05D006953 ORTHO05D008556 3.3e-09 64.7 33 84.8
TWI53G1308 Tripterygium wilfordii HOM05D006953 ORTHO05D008556 4.3e-09 64.3 35 82.9
Aa31LG3G80 Aethionema arabicum HOM05D006953 ORTHO05D008556 5.6e-09 63.9 65 52.3
BraA10t45347Z Brassica rapa HOM05D006953 ORTHO05D008556 5.6e-09 63.9 35 85.7
CSS0025790 Camellia sinensis var. sinensis HOM05D006953 ORTHO05D008556 7.3e-09 63.5 35 82.9
PSO384G5050 Papaver somniferum HOM05D006953 ORTHO05D008556 7.3e-09 63.5 34 82.4
Eucgr.K03148 Eucalyptus grandis HOM05D006953 ORTHO05D008556 1.2e-08 62.8 38 73.7
Gohir.D10G225201 Gossypium hirsutum HOM05D006953 ORTHO05D008556 1.2e-08 62.8 37 78.4
Gorai.011G256200 Gossypium raimondii HOM05D006953 ORTHO05D008556 1.2e-08 62.8 37 78.4
Gohir.A10G216201 Gossypium hirsutum HOM05D006953 ORTHO05D008556 1.6e-08 62.4 37 75.7
Mapoly0086s0029 Marchantia polymorpha HOM05D006953 ORTHO05D008556 1.6e-08 62.4 35 77.1
PSO801G0549 Papaver somniferum HOM05D006953 ORTHO05D008556 1.6e-08 62.4 35 82.9
TWI63G1588 Tripterygium wilfordii HOM05D006953 ORTHO05D008556 2.8e-08 61.6 35 82.9
AL3G24240 Arabidopsis lyrata HOM05D006953 ORTHO05D008556 3.6e-08 61.2 35 80.0
AT3G12587 Arabidopsis thaliana HOM05D006953 ORTHO05D008556 3.6e-08 61.2 35 80.0
Carub.0003s1193 Capsella rubella HOM05D006953 ORTHO05D008556 3.6e-08 61.2 35 80.0
Duzib114G0949 Durio zibethinus HOM05D006953 ORTHO05D008556 3.6e-08 61.2 35 80.0
Gohir.A13G019700 Gossypium hirsutum HOM05D006953 ORTHO05D008556 3.6e-08 61.2 46 63.0
SEGI_27928 Sequoiadendron giganteum HOM05D006953 ORTHO05D008556 3.6e-08 61.2 38 71.1
THA.LOC104799351 Tarenaya hassleriana HOM05D006953 ORTHO05D008556 3.6e-08 61.2 35 80.0
BcaC01g04017 Brassica carinata HOM05D006953 ORTHO05D008556 4.7e-08 60.8 42 66.7
BraA03t12923Z Brassica rapa HOM05D006953 ORTHO05D008556 4.7e-08 60.8 35 80.0
Thhalv10021851m.g Eutrema salsugineum HOM05D006953 ORTHO05D008556 4.7e-08 60.8 39 71.8
PSO339G5949 Papaver somniferum HOM05D006953 ORTHO05D008556 4.7e-08 60.8 35 80.0
BraA09t36404Z Brassica rapa HOM05D006953 ORTHO05D008556 6.2e-08 60.5 31 93.5
CARHR087090 Cardamine hirsuta HOM05D006953 ORTHO05D008556 8.1e-08 60.1 35 80.0
Duzib106G0684 Durio zibethinus HOM05D006953 ORTHO05D008556 8.1e-08 60.1 35 77.1
Gohir.D13G020300 Gossypium hirsutum HOM05D006953 ORTHO05D008556 8.1e-08 60.1 35 77.1
Thecc.10G046100 Theobroma cacao HOM05D006953 ORTHO05D008556 8.1e-08 60.1 35 77.1
Ciclev10033290m.g Citrus clementina HOM05D006953 ORTHO05D008556 1.1e-07 59.7 35 74.3
COL.COLO4_14982 Corchorus olitorius HOM05D006953 ORTHO05D008556 1.1e-07 59.7 41 73.2
BolC3t16848H Brassica oleracea HOM05D006953 ORTHO05D008556 1.4e-07 59.3 35 77.1
Nn3g21523 Nelumbo nucifera HOM05D006953 ORTHO05D008556 1.8e-07 58.9 35 65.7
Nn1g01406 Nelumbo nucifera HOM05D006953 ORTHO05D008556 2.4e-07 58.5 35 74.3
Pp3c21_16500 Physcomitrium patens HOM05D006953 ORTHO05D008556 8.9e-07 56.6 33 72.7
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 1.2e-06 56.2 36 72.2
BNapus_Darmor_BZH_scaffold_149p00110 Brassica napus HOM05D006953 ORTHO05D008556 2.0e-06 55.5 35 74.3
C01p52590 Brassica napus HOM05D006953 ORTHO05D008556 2.0e-06 55.5 35 74.3
BolC1t05198H Brassica oleracea HOM05D006953 ORTHO05D008556 2.0e-06 55.5 35 74.3
BraA01t04125Z Brassica rapa HOM05D006953 ORTHO05D008556 2.0e-06 55.5 35 74.3
ECA232G3005 Erigeron canadensis HOM05D006953 ORTHO05D008556 2.0e-06 55.5 35 74.3
BolC5t34201H Brassica oleracea HOM05D006953 ORTHO05D008556 2.6e-06 55.1 35 68.6
arahy.Tifrunner.gnm1.ann1.NJI399 Arachis hypogaea HOM05D000548 ORTHO05D000987 3.4e-06 54.7 33 78.8
PGR142G3972 Punica granatum HOM05D006953 ORTHO05D008556 3.4e-06 54.7 35 68.6
A09p07500 Brassica napus HOM05D006953 ORTHO05D008556 9.9e-06 53.1 31 83.9
Glyma.13G258200 Glycine max HOM05D006953 ORTHO05D008556 9.9e-06 53.1 35 71.4


User provided reference genes

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