Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR083040 Cardamine hirsuta HOM05D005727 ORTHO05D007324 1.3e-129 466.5 239 100.0
Carub.0003s0787 Capsella rubella HOM05D005727 ORTHO05D007324 1.8e-115 419.5 239 90.4
AL3G19740 Arabidopsis lyrata HOM05D005727 ORTHO05D007324 5.9e-111 404.4 241 88.0
AT3G08740 Arabidopsis thaliana HOM05D005727 ORTHO05D007324 6.5e-110 401.0 242 86.4
A05p40060 Brassica napus HOM05D005727 ORTHO05D007324 1.2e-108 396.7 239 84.5
Sp3g07170 Schrenkiella parvula HOM05D005727 ORTHO05D007324 1.2e-108 396.7 239 84.1
BcaC05g29610 Brassica carinata HOM05D005727 ORTHO05D007324 2.7e-108 395.6 239 84.1
C05p59120 Brassica napus HOM05D005727 ORTHO05D007324 2.7e-108 395.6 239 84.1
BolC5t34584H Brassica oleracea HOM05D005727 ORTHO05D007324 2.7e-108 395.6 239 84.5
Thhalv10023841m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 2.8e-105 385.6 239 81.6
Thhalv10022392m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 3.7e-105 385.2 239 80.8
THA.LOC104823320 Tarenaya hassleriana HOM05D005727 ORTHO05D007324 1.9e-101 372.9 239 80.8
Thhalv10014581m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 2.2e-97 359.4 235 79.6
Aa31LG5G18760 Aethionema arabicum HOM05D005727 ORTHO05D007324 4.8e-97 358.2 239 80.3
Sp6g41120 Schrenkiella parvula HOM05D005727 ORTHO05D007324 4.2e-93 345.1 246 74.4
A10p33800 Brassica napus HOM05D005727 ORTHO05D007324 4.7e-92 341.7 186 86.6
BcaNung03307 Brassica carinata HOM05D005727 ORTHO05D007324 6.1e-92 341.3 227 77.1
BolC3t14633H Brassica oleracea HOM05D005727 ORTHO05D007324 8.0e-92 340.9 215 79.1
C09p74740 Brassica napus HOM05D005727 ORTHO05D007324 1.0e-91 340.5 186 86.6
BcaNung03303 Brassica carinata HOM05D005727 ORTHO05D007324 1.4e-91 340.1 192 84.9
BraA10t45408Z Brassica rapa HOM05D005727 ORTHO05D007324 3.0e-91 339.0 186 85.5
BcaC06g31951 Brassica carinata HOM05D005727 ORTHO05D007324 4.0e-91 338.6 186 86.0
Atru.chr8.117 Acer truncatum HOM05D005727 ORTHO05D007324 3.4e-90 335.5 240 72.1
Cpa.g.sc86.59 Carica papaya HOM05D005727 ORTHO05D007324 1.3e-89 333.6 240 71.7
TAR267G0001 Trochodendron aralioides HOM05D005727 ORTHO05D007324 2.4e-88 329.3 242 70.7
Manes.08G171300 Manihot esculenta HOM05D005727 ORTHO05D007324 9.1e-88 327.4 244 70.9
TAR636G3506 Trochodendron aralioides HOM05D005727 ORTHO05D007324 9.1e-88 327.4 242 70.2
Nn2g10300 Nelumbo nucifera HOM05D005727 ORTHO05D007324 2.0e-87 326.2 242 69.4
arahy.Tifrunner.gnm1.ann1.FBM6UZ Arachis hypogaea HOM05D005727 ORTHO05D007324 2.7e-87 325.9 241 69.3
Psat3g118920 Pisum sativum HOM05D005727 ORTHO05D007324 3.5e-87 325.5 240 70.8
Ciclev10012658m.g Citrus clementina HOM05D005727 ORTHO05D007324 5.9e-87 324.7 240 70.4
Gohir.D09G215000 Gossypium hirsutum HOM05D005727 ORTHO05D007324 1.0e-86 323.9 239 67.4
Gorai.006G235400 Gossypium raimondii HOM05D005727 ORTHO05D007324 1.0e-86 323.9 239 67.4
Gohir.A09G213660 Gossypium hirsutum HOM05D005727 ORTHO05D007324 1.3e-86 323.6 239 67.4
QL07p032118 Quercus lobata HOM05D005727 ORTHO05D007324 2.3e-86 322.8 243 67.9
Cfa017035 Carpinus fangiana HOM05D005727 ORTHO05D007324 2.9e-86 322.4 240 69.2
Potri.016G136600 Populus trichocarpa HOM05D005727 ORTHO05D007324 2.9e-86 322.4 237 69.2
Sabra04G0153300 Salix brachista HOM05D005727 ORTHO05D007324 6.5e-86 321.2 237 67.5
MELO3C009104.2 Cucumis melo HOM05D005727 ORTHO05D007324 8.6e-86 320.9 222 72.1
PGR031G0696 Punica granatum HOM05D005727 ORTHO05D007324 1.5e-85 320.1 211 73.0
Thecc.04G151700 Theobroma cacao HOM05D005727 ORTHO05D007324 1.5e-85 320.1 241 68.9
CiPaw.09G221300 Carya illinoinensis HOM05D005727 ORTHO05D007324 1.9e-85 319.7 243 66.7
Haze_21174 Corylus avellana HOM05D005727 ORTHO05D007324 5.5e-85 318.2 242 68.6
Cc06_g00400 Coffea canephora HOM05D005727 ORTHO05D007324 7.2e-85 317.8 240 68.8
CsaV3_3G033100 Cucumis sativus L. HOM05D005727 ORTHO05D007324 9.5e-85 317.4 236 69.1
CSS0016709 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 1.2e-84 317.0 243 67.1
Lj1g0000237 Lotus japonicus HOM05D005727 ORTHO05D007324 1.2e-84 317.0 239 67.4
DCAR_023975 Daucus carota HOM05D005727 ORTHO05D007324 1.6e-84 316.6 232 70.3
Phvul.008G082900 Phaseolus vulgaris HOM05D005727 ORTHO05D007324 1.6e-84 316.6 241 68.5
Migut.J00039 Erythranthe guttata HOM05D005727 ORTHO05D007324 2.1e-84 316.2 216 71.8
Aa31LG5G11490 Aethionema arabicum HOM05D005727 ORTHO05D007324 2.8e-84 315.8 202 80.2
Lalb_Chr01g0023751 Lupinus albus HOM05D005727 ORTHO05D007324 2.8e-84 315.8 225 71.6
PSO017G0584 Papaver somniferum HOM05D005727 ORTHO05D007324 2.8e-84 315.8 244 67.2
Hund19761 Selenicereus undatus HOM05D005727 ORTHO05D007324 4.7e-84 315.1 239 67.8
ECA248G0208 Erigeron canadensis HOM05D005727 ORTHO05D007324 6.1e-84 314.7 221 69.2
Aqoxy4G02424 Aquilegia oxysepala HOM05D005727 ORTHO05D007324 1.0e-83 313.9 245 68.6
EL10Ac7g17100 Beta vulgaris HOM05D005727 ORTHO05D007324 1.0e-83 313.9 241 67.2
Glyma.18G213900 Glycine max HOM05D005727 ORTHO05D007324 1.4e-83 313.5 241 66.8
HanXRQChr11g0345321 Helianthus annuus HOM05D005727 ORTHO05D007324 1.8e-83 313.2 227 69.6
PSO170G4055 Papaver somniferum HOM05D005727 ORTHO05D007324 1.8e-83 313.2 243 65.4
arahy.Tifrunner.gnm1.ann1.CT9SCB Arachis hypogaea HOM05D005727 ORTHO05D007324 2.3e-83 312.8 249 65.5
VMungo1383G0728 Vigna mungo HOM05D005727 ORTHO05D007324 4.0e-83 312.0 241 66.8
MD12G1188200 Malus domestica HOM05D005727 ORTHO05D007324 5.2e-83 311.6 243 70.0
Actinidia20792 Actinidia chinensis HOM05D005727 ORTHO05D007324 8.9e-83 310.8 243 66.7
SalBow8G0913 Salvia bowleyana HOM05D005727 ORTHO05D007324 8.9e-83 310.8 216 69.9
RcHm_v2.0_Chr3g0460491 Rosa chinensis HOM05D005727 ORTHO05D007324 1.2e-82 310.5 245 68.2
Sed0002775 Sechium edule HOM05D005727 ORTHO05D007324 1.2e-82 310.5 218 70.6
Dinv16978 Davidia involucrata HOM05D005727 ORTHO05D007324 1.5e-82 310.1 242 66.5
Glyma.09G275000 Glycine max HOM05D005727 ORTHO05D007324 2.0e-82 309.7 239 66.1
FAN05G4930 Fragaria x ananassa HOM05D005727 ORTHO05D007324 4.4e-82 308.5 246 67.5
BcaC01g05776 Brassica carinata HOM05D005727 ORTHO05D007324 5.7e-82 308.1 186 82.3
Medtr7g073250 Medicago truncatula HOM05D005727 ORTHO05D007324 5.7e-82 308.1 224 72.8
GSVIVG01030181001 Vitis vinifera HOM05D005727 ORTHO05D007324 7.5e-82 307.8 238 64.3
Lsat_1_v5_gn_5_152381 Lactuca sativa HOM05D005727 ORTHO05D007324 1.3e-81 307.0 233 65.2
PGSC0003DMG400031234 Solanum tuberosum HOM05D005727 ORTHO05D007324 1.7e-81 306.6 239 66.1
FAN14G2915 Fragaria x ananassa HOM05D005727 ORTHO05D007324 2.2e-81 306.2 243 66.3
Os12g0115900 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 2.2e-81 306.2 197 71.1
Os11g0116400 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 3.7e-81 305.4 197 70.6
FvH4_6g09890 Fragaria vesca HOM05D005727 ORTHO05D007324 4.9e-81 305.1 247 66.0
Sc02g0000150 Simmondsia chinensis HOM05D005727 ORTHO05D007324 4.9e-81 305.1 239 65.7
TWI53G1599 Tripterygium wilfordii HOM05D005727 ORTHO05D007324 8.3e-81 304.3 239 66.1
Sopen10g027500 Solanum pennellii HOM05D005727 ORTHO05D007324 1.4e-80 303.5 239 65.7
CANSAT35G1579 Cannabis sativa HOM05D005727 ORTHO05D007324 2.4e-80 302.8 245 66.1
FAN09G3145 Fragaria x ananassa HOM05D005727 ORTHO05D007324 4.1e-80 302.0 245 66.1
Solyc10g075020.3 Solanum lycopersicum HOM05D005727 ORTHO05D007324 5.4e-80 301.6 239 65.3
HanXRQChr01g0000121 Helianthus annuus HOM05D005727 ORTHO05D007324 1.2e-79 300.4 222 66.2
SGA_v2.0_scaffold85G26613 Striga asiatica HOM05D005727 ORTHO05D007324 1.2e-79 300.4 219 67.1
Ah.15g090030 Amaranthus hybridus HOM05D005727 ORTHO05D007324 1.6e-79 300.1 239 62.3
AUR62006416 Chenopodium quinoa HOM05D005727 ORTHO05D007324 2.0e-79 299.7 239 62.8
Eucgr.A00739 Eucalyptus grandis HOM05D005727 ORTHO05D007324 2.0e-79 299.7 242 62.8
Oeu057982.1 Olea europaea HOM05D005727 ORTHO05D007324 2.0e-79 299.7 210 68.1
ATR1127G235 Amborella trichopoda HOM05D005727 ORTHO05D007324 2.7e-79 299.3 186 74.7
FAN05G2146 Fragaria x ananassa HOM05D005727 ORTHO05D007324 3.5e-79 298.9 266 62.4
HPP92_018087 Vanilla planifolia HOM05D005727 ORTHO05D007324 3.5e-79 298.9 239 64.0
CAN.G487.5 Capsicum annuum HOM05D005727 ORTHO05D007324 4.5e-79 298.5 238 64.7
CSS0006704 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 1.0e-78 297.4 239 63.2
FAN05G2443 Fragaria x ananassa HOM05D005727 ORTHO05D007324 1.0e-78 297.4 264 62.9
TPR.G14131 Trifolium pratense HOM05D005727 ORTHO05D007324 6.6e-78 294.7 240 65.0
SalBow1G7101 Salvia bowleyana HOM05D005727 ORTHO05D007324 1.5e-77 293.5 244 61.5
Actinidia32567 Actinidia chinensis HOM05D005727 ORTHO05D007324 4.3e-77 292.0 224 67.9
AUR62029764 Chenopodium quinoa HOM05D005727 ORTHO05D007324 4.3e-77 292.0 251 59.0
Peaxi162Scf01238g00221 Petunia axillaris HOM05D005727 ORTHO05D007324 4.3e-77 292.0 265 60.4
SalBow1G5580 Salvia bowleyana HOM05D005727 ORTHO05D007324 3.0e-75 285.8 197 68.0
Lj3A941T101 Lonicera japonica HOM05D005727 ORTHO05D007324 5.2e-75 285.0 237 64.6
Nitab4.5_0010794g0010 Nicotiana tabacum HOM05D005727 ORTHO05D007324 1.5e-74 283.5 243 64.2
AagrBONN_evm.TU.Sc2ySwM_228.1047 Anthoceros agrestis HOM05D005727 ORTHO05D007324 2.6e-74 282.7 224 61.2
CBR_g46434 Chara braunii HOM05D005727 ORTHO05D007324 4.1e-72 275.4 186 66.7
MSTRG.5500 Avicennia marina HOM05D005727 ORTHO05D007324 2.0e-71 273.1 235 60.4
Pp3c23_18430 Physcomitrium patens HOM05D005727 ORTHO05D007324 3.5e-71 272.3 239 59.8
Prupe.6G293500 Prunus persica HOM05D005727 ORTHO05D007324 8.6e-70 267.7 243 62.1
COL.COLO4_06480 Corchorus olitorius HOM05D005727 ORTHO05D007324 1.5e-69 266.9 222 63.1
SalBow5G2514 Salvia bowleyana HOM05D005727 ORTHO05D007324 9.5e-69 264.2 163 74.8
SMO358G0605 Selaginella moellendorffii HOM05D005727 ORTHO05D007324 6.2e-68 261.5 184 60.3
SGA_v2.0_scaffold85G26621 Striga asiatica HOM05D005727 ORTHO05D007324 8.0e-68 261.2 160 75.6
vmacro08938 Vaccinium macrocarpon HOM05D005727 ORTHO05D007324 3.4e-66 255.8 307 50.8
Duzib268G0979 Durio zibethinus HOM05D005727 ORTHO05D007324 1.4e-64 250.4 200 66.5
Mapoly0080s0087 Marchantia polymorpha HOM05D005727 ORTHO05D007324 2.7e-63 246.1 229 53.7
unitig_578.g15912 Utricularia gibba HOM05D005727 ORTHO05D007324 3.0e-62 242.7 195 65.1
MCO07G614 Micromonas commoda HOM05D005727 ORTHO05D007324 4.0e-59 232.3 183 58.5
Rhsim04G0121700 Rhododendron simsii HOM05D005727 ORTHO05D007324 4.9e-57 225.3 366 41.5
Cre16.g691000 Chlamydomonas reinhardtii HOM05D005727 ORTHO05D007324 7.3e-53 211.5 184 54.9
MD04G1174600 Malus domestica HOM05D005727 ORTHO05D007324 8.1e-52 208.0 133 71.4
SEGI_30349 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 1.9e-45 186.8 129 63.6
ClCG10G022720 Citrullus lanatus HOM05D005727 ORTHO05D007324 4.2e-40 169.1 104 72.1
Sopen10g027490 Solanum pennellii HOM05D005727 ORTHO05D007324 1.6e-39 167.2 104 76.0
CDE04G3002 Ceratophyllum demersum HOM05D005727 ORTHO05D007324 5.3e-35 152.1 131 64.9
Zm00001eb406060 Zea mays HOM05D005727 ORTHO05D007324 4.6e-23 112.5 91 63.7
PRCOL_00007056 Prasinoderma coloniale HOM05D005727 ORTHO05D007324 5.1e-22 109.0 166 39.8
Pp3c1_29390 Physcomitrium patens HOM05D007418 ORTHO05D009419 2.1e-20 103.6 186 25.8
SMO172G0180 Selaginella moellendorffii HOM05D007418 ORTHO05D009419 9.0e-19 98.2 184 25.0
PSO384G4713 Papaver somniferum HOM05D007418 ORTHO05D009419 7.6e-18 95.1 180 27.2
Aqoxy1G00469 Aquilegia oxysepala HOM05D002514 ORTHO05D002761 1.0e-17 94.7 180 25.0
PSO339G6348 Papaver somniferum HOM05D007418 ORTHO05D009419 1.0e-17 94.7 180 27.2
CDE04G0740 Ceratophyllum demersum HOM05D005727 ORTHO05D007324 1.3e-17 94.4 63 68.3
THA.LOC104817736 Tarenaya hassleriana HOM05D007418 ORTHO05D009419 1.7e-17 94.0 183 27.9
CBR_g28818 Chara braunii HOM05D007418 ORTHO05D009419 2.9e-17 93.2 188 27.7
AagrBONN_evm.TU.Sc2ySwM_344.2531 Anthoceros agrestis HOM05D007418 ORTHO05D009419 3.8e-17 92.8 164 28.7
Eucgr.J01769 Eucalyptus grandis HOM05D007418 ORTHO05D009419 8.4e-17 91.7 221 27.6
MCO01G577 Micromonas commoda HOM05D005727 ORTHO05D009419 7.1e-16 88.6 186 26.9
Duzib160G0534 Durio zibethinus HOM05D007418 ORTHO05D009419 2.1e-15 87.0 215 26.0
AT4G26310 Arabidopsis thaliana HOM05D007418 ORTHO05D009419 4.6e-15 85.9 218 24.3
Aa31LG11G8030 Aethionema arabicum HOM05D007418 ORTHO05D009419 6.0e-15 85.5 243 25.9
CARHR233880 Cardamine hirsuta HOM05D007418 ORTHO05D009419 1.0e-14 84.7 183 24.0
PGR119G2313 Punica granatum HOM05D007418 ORTHO05D009419 1.3e-14 84.3 184 24.5
Ciclev10016443m.g Citrus clementina HOM05D007418 ORTHO05D009419 1.8e-14 84.0 184 23.9
Sp3g14020 Schrenkiella parvula HOM05D007418 ORTHO05D009419 1.8e-14 84.0 183 25.7
Carub.0007s1463 Capsella rubella HOM05D007418 ORTHO05D009419 3.9e-14 82.8 218 24.3
BolC5t33821H Brassica oleracea HOM05D007418 ORTHO05D009419 5.1e-14 82.4 183 25.1
BraA05t22194Z Brassica rapa HOM05D007418 ORTHO05D009419 5.1e-14 82.4 183 25.1
Thhalv10021419m.g Eutrema salsugineum HOM05D007418 ORTHO05D009419 5.1e-14 82.4 183 25.1
Manes.05G202800 Manihot esculenta HOM05D007418 ORTHO05D009419 8.7e-14 81.6 183 27.3
AL7G26640 Arabidopsis lyrata HOM05D007418 ORTHO05D009419 3.3e-13 79.7 230 24.3
TWI60G0114 Tripterygium wilfordii HOM05D007418 ORTHO05D009419 9.7e-13 78.2 185 24.3
QL01p009000 Quercus lobata HOM05D007418 ORTHO05D009419 2.8e-12 76.6 219 25.6
HPP92_000821 Vanilla planifolia HOM05D007418 ORTHO05D009419 1.1e-11 74.7 165 27.3
COL.COLO4_22858 Corchorus olitorius HOM05D007418 ORTHO05D009419 1.8e-11 73.9 236 25.8
Potri.001G004300 Populus trichocarpa HOM05D007418 ORTHO05D009419 4.5e-10 69.3 236 25.0
SEGI_29867 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 4.5e-10 69.3 37 83.8
Ciclev10010465m.g Citrus clementina HOM05D005727 ORTHO05D007324 1.1e-08 64.7 40 72.5
Sabra01G0003000 Salix brachista HOM05D007418 ORTHO05D009419 2.5e-08 63.5 236 24.6


User provided reference genes

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