Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR081010 Cardamine hirsuta HOM05D003727 ORTHO05D004731 2.0e-214 748.8 367 100.0
Carub.0003s0594 Capsella rubella HOM05D003727 ORTHO05D004731 5.0e-210 734.2 367 97.5
AT3G06483 Arabidopsis thaliana HOM05D003727 ORTHO05D004731 9.4e-209 729.9 367 97.0
Sp3g05430 Schrenkiella parvula HOM05D003727 ORTHO05D004731 8.2e-205 716.8 371 94.1
Thhalv10020969m.g Eutrema salsugineum HOM05D003727 ORTHO05D004731 2.0e-203 712.2 371 94.1
C03p42180 Brassica napus HOM05D003727 ORTHO05D004731 2.9e-202 708.4 368 94.3
BraA03t12649Z Brassica rapa HOM05D003727 ORTHO05D004731 6.5e-202 707.2 368 94.0
BolC3t16499H Brassica oleracea HOM05D003727 ORTHO05D004731 1.1e-201 706.4 368 94.0
Aa31LG5G17020 Aethionema arabicum HOM05D003727 ORTHO05D004731 5.2e-199 697.6 371 91.1
A03p34710 Brassica napus HOM05D003727 ORTHO05D004731 1.8e-196 689.1 399 86.5
THA.LOC104798546 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 3.1e-196 688.3 371 90.0
THA.LOC104802717 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 3.1e-196 688.3 371 90.0
BcaC05g30021 Brassica carinata HOM05D003727 ORTHO05D004731 2.0e-195 685.6 359 92.8
BcaC05g29821 Brassica carinata HOM05D003727 ORTHO05D004731 5.9e-195 684.1 360 92.2
A05p41540 Brassica napus HOM05D003727 ORTHO05D004731 5.9e-195 684.1 360 92.2
C05p60740 Brassica napus HOM05D003727 ORTHO05D004731 5.9e-195 684.1 360 92.2
BolC5t34734H Brassica oleracea HOM05D003727 ORTHO05D004731 5.9e-195 684.1 360 92.2
BraA05t22875Z Brassica rapa HOM05D003727 ORTHO05D004731 5.9e-195 684.1 360 92.2
THA.LOC104818862 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 7.7e-195 683.7 371 88.4
THA.LOC104827107 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 1.0e-191 673.3 369 88.9
Gohir.A01G036300 Gossypium hirsutum HOM05D003727 ORTHO05D004731 1.3e-189 666.4 371 87.6
Duzib151G0200 Durio zibethinus HOM05D003727 ORTHO05D004731 2.8e-189 665.2 371 86.8
Gorai.002G032100 Gossypium raimondii HOM05D003727 ORTHO05D004731 5.4e-188 661.0 371 87.1
Cfa015726 Carpinus fangiana HOM05D003727 ORTHO05D004731 9.1e-188 660.2 371 86.5
Gohir.D01G023600 Gossypium hirsutum HOM05D003727 ORTHO05D004731 1.6e-187 659.4 371 86.8
Thecc.04G312500 Theobroma cacao HOM05D003727 ORTHO05D004731 1.0e-186 656.8 371 85.4
QL06p014168 Quercus lobata HOM05D003727 ORTHO05D004731 3.8e-186 654.8 372 85.8
Haze_00772 Corylus avellana HOM05D003727 ORTHO05D004731 3.2e-185 651.7 378 85.2
RcHm_v2.0_Chr4g0427421 Rosa chinensis HOM05D003727 ORTHO05D004731 4.2e-185 651.4 371 85.7
Prupe.1G105800 Prunus persica HOM05D003727 ORTHO05D004731 7.2e-185 650.6 371 85.2
FvH4_4g21480 Fragaria vesca HOM05D003727 ORTHO05D004731 9.5e-185 650.2 371 85.2
FAN12G0484 Fragaria x ananassa HOM05D003727 ORTHO05D004731 9.5e-185 650.2 371 85.2
arahy.Tifrunner.gnm1.ann1.EP383Y Arachis hypogaea HOM05D003727 ORTHO05D004731 1.8e-183 646.0 371 84.4
Cpa.g.sc146.27 Carica papaya HOM05D003727 ORTHO05D004731 3.0e-183 645.2 371 84.6
FAN17G0291 Fragaria x ananassa HOM05D003727 ORTHO05D004731 4.0e-183 644.8 371 84.6
Lj6g0008986 Lotus japonicus HOM05D003727 ORTHO05D004731 2.0e-182 642.5 371 83.6
Potri.010G002000 Populus trichocarpa HOM05D003727 ORTHO05D004731 2.0e-182 642.5 371 84.1
TWI73G0221 Tripterygium wilfordii HOM05D003727 ORTHO05D004731 2.6e-182 642.1 371 84.1
Sabra10G0001600 Salix brachista HOM05D003727 ORTHO05D004731 3.4e-182 641.7 371 83.8
CANSAT78G0237 Cannabis sativa HOM05D003727 ORTHO05D004731 1.7e-181 639.4 368 84.0
CsaV3_4G025780 Cucumis sativus L. HOM05D003727 ORTHO05D004731 1.7e-181 639.4 372 84.4
Glyma.15G188500 Glycine max HOM05D003727 ORTHO05D004731 2.8e-181 638.6 371 84.1
CiPaw.01G129700 Carya illinoinensis HOM05D003727 ORTHO05D004731 8.3e-181 637.1 371 83.6
PGR004G0380 Punica granatum HOM05D003727 ORTHO05D004731 1.1e-180 636.7 384 81.5
Glyma.09G079000 Glycine max HOM05D003727 ORTHO05D004731 1.8e-180 636.0 371 83.3
Gohir.A10G176400 Gossypium hirsutum HOM05D003727 ORTHO05D004731 1.8e-180 636.0 371 83.3
Gohir.D10G183100 Gossypium hirsutum HOM05D003727 ORTHO05D004731 2.4e-180 635.6 371 83.3
Gorai.011G205200 Gossypium raimondii HOM05D003727 ORTHO05D004731 2.4e-180 635.6 371 83.3
Manes.03G211600 Manihot esculenta HOM05D003727 ORTHO05D004731 2.4e-180 635.6 371 82.2
ClCG04G007480 Citrullus lanatus HOM05D003727 ORTHO05D004731 4.1e-180 634.8 372 83.1
Ca_07250_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 9.2e-180 633.6 366 83.6
VMungo1309G1883 Vigna mungo HOM05D003727 ORTHO05D004731 9.2e-180 633.6 371 83.0
Ciclev10005215m.g Citrus clementina HOM05D003727 ORTHO05D004731 1.6e-179 632.9 371 83.3
Sed0005057 Sechium edule HOM05D003727 ORTHO05D004731 1.6e-179 632.9 372 82.8
CsaV3_3G015500 Cucumis sativus L. HOM05D003727 ORTHO05D004731 2.7e-179 632.1 372 83.1
Phvul.009G219900 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 2.7e-179 632.1 371 83.3
MD13G1140800 Malus domestica HOM05D003727 ORTHO05D004731 5.9e-179 630.9 368 83.7
Lalb_Chr23g0276061 Lupinus albus HOM05D003727 ORTHO05D004731 1.0e-178 630.2 371 83.3
GSVIVG01017684001 Vitis vinifera HOM05D003727 ORTHO05D004731 1.3e-178 629.8 371 82.5
arahy.Tifrunner.gnm1.ann1.BN91E6 Arachis hypogaea HOM05D003727 ORTHO05D004731 1.7e-178 629.4 410 76.8
TPR.G15491 Trifolium pratense HOM05D003727 ORTHO05D004731 1.7e-178 629.4 366 83.1
Psat3g179960 Pisum sativum HOM05D003727 ORTHO05D004731 2.9e-178 628.6 364 83.5
Medtr7g024460 Medicago truncatula HOM05D003727 ORTHO05D004731 3.8e-178 628.2 366 82.2
ClCG05G006850 Citrullus lanatus HOM05D003727 ORTHO05D004731 1.9e-177 625.9 372 82.8
Aqoxy7G02168 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 7.3e-177 624.0 371 82.7
PSO357G0471 Papaver somniferum HOM05D003727 ORTHO05D004731 2.1e-176 622.5 370 81.9
Rhsim04G0248100 Rhododendron simsii HOM05D003727 ORTHO05D004731 2.1e-176 622.5 373 82.3
Solyc01g057210.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 4.7e-176 621.3 373 81.0
COL.COLO4_34520 Corchorus olitorius HOM05D003727 ORTHO05D004731 6.1e-176 620.9 362 84.3
DCAR_023405 Daucus carota HOM05D003727 ORTHO05D004731 6.1e-176 620.9 371 80.9
Sed0027316 Sechium edule HOM05D003727 ORTHO05D004731 1.0e-175 620.2 372 81.7
Ca_02357_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 1.8e-175 619.4 371 82.2
Sopen01g021750 Solanum pennellii HOM05D003727 ORTHO05D004731 2.3e-175 619.0 373 80.7
PGSC0003DMG400013068 Solanum tuberosum HOM05D003727 ORTHO05D004731 3.0e-175 618.6 373 80.7
Aqoxy5G02791 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 4.0e-175 618.2 372 82.3
PSO170G4280 Papaver somniferum HOM05D003727 ORTHO05D004731 6.8e-175 617.5 370 81.4
MSTRG.21742 Avicennia marina HOM05D003727 ORTHO05D004731 8.9e-175 617.1 371 80.6
Lalb_Chr11g0073551 Lupinus albus HOM05D003727 ORTHO05D004731 2.0e-174 615.9 371 80.9
TAR365G0780 Trochodendron aralioides HOM05D003727 ORTHO05D004731 7.5e-174 614.0 371 81.4
Oeu022704.1 Olea europaea HOM05D003727 ORTHO05D004731 3.7e-173 611.7 373 81.8
TPR.G39591 Trifolium pratense HOM05D003727 ORTHO05D004731 6.4e-173 610.9 371 80.3
CAN.G179.19 Capsicum annuum HOM05D003727 ORTHO05D004731 8.3e-173 610.5 373 81.2
Eucgr.H04122 Eucalyptus grandis HOM05D003727 ORTHO05D004731 1.8e-172 609.4 357 83.2
HanXRQChr07g0194351 Helianthus annuus HOM05D003727 ORTHO05D004731 1.8e-172 609.4 372 77.7
Phvul.009G220000 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 2.4e-172 609.0 360 82.2
Hma1.2p1_2234F.1_g317700 Hydrangea macrophylla HOM05D003727 ORTHO05D004731 3.2e-172 608.6 371 79.0
CSS0027704 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 5.4e-172 607.8 368 80.2
Migut.N00003 Erythranthe guttata HOM05D003727 ORTHO05D004731 5.4e-172 607.8 366 80.3
Hund12253 Selenicereus undatus HOM05D003727 ORTHO05D004731 1.2e-171 606.7 369 78.9
Medtr2g045490 Medicago truncatula HOM05D003727 ORTHO05D004731 2.0e-171 605.9 371 79.2
Cc03_g00160 Coffea canephora HOM05D003727 ORTHO05D004731 4.6e-171 604.7 371 80.3
Peaxi162Scf00126g01030 Petunia axillaris HOM05D003727 ORTHO05D004731 1.0e-170 603.6 373 79.4
Nitab4.5_0001334g0060 Nicotiana tabacum HOM05D003727 ORTHO05D004731 1.7e-170 602.8 384 78.1
Nitab4.5_0004046g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 3.9e-170 601.7 373 79.9
Atru.chr4.3143 Acer truncatum HOM05D003727 ORTHO05D004731 6.6e-170 600.9 359 81.9
Sc25g0002190 Simmondsia chinensis HOM05D003727 ORTHO05D004731 2.5e-169 599.0 398 75.1
Lsat_1_v5_gn_6_70560 Lactuca sativa HOM05D003727 ORTHO05D004731 2.1e-168 595.9 371 77.1
EL10Ac3g06260 Beta vulgaris HOM05D003727 ORTHO05D004731 2.8e-168 595.5 371 79.0
HanXRQChr05g0149271 Helianthus annuus HOM05D003727 ORTHO05D004731 4.7e-168 594.7 371 76.0
MBI18_g09643_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 4.7e-168 594.7 371 78.4
GSVIVG01031319001 Vitis vinifera HOM05D003727 ORTHO05D004731 6.2e-168 594.3 369 78.9
Nitab4.5_0003998g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 8.0e-168 594.0 368 78.5
CiPaw.02G069500 Carya illinoinensis HOM05D003727 ORTHO05D004731 1.4e-167 593.2 351 82.3
CSS0023101 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 4.0e-167 591.7 375 77.3
Nn3g21906 Nelumbo nucifera HOM05D003727 ORTHO05D004731 1.5e-166 589.7 373 78.6
unitig_699.g19980 Utricularia gibba HOM05D003727 ORTHO05D004731 1.3e-165 586.6 371 76.3
Actinidia18506 Actinidia chinensis HOM05D003727 ORTHO05D004731 3.2e-164 582.0 352 81.2
CAN.G484.91 Capsicum annuum HOM05D003727 ORTHO05D004731 1.2e-163 580.1 368 76.1
Peaxi162Scf00668g00119 Petunia axillaris HOM05D003727 ORTHO05D004731 1.6e-163 579.7 368 76.6
ECA233G2414 Erigeron canadensis HOM05D003727 ORTHO05D004731 6.0e-163 577.8 371 75.5
Actinidia00296 Actinidia chinensis HOM05D003727 ORTHO05D004731 1.1e-161 573.5 371 77.9
Glyma.17G040500 Glycine max HOM05D003727 ORTHO05D004731 5.6e-161 571.2 359 77.7
ATR0796G219 Amborella trichopoda HOM05D003727 ORTHO05D004731 1.6e-160 569.7 370 75.4
Psat1g017520 Pisum sativum HOM05D003727 ORTHO05D004731 4.7e-160 568.2 352 78.4
Lj6A700T83 Lonicera japonica HOM05D003727 ORTHO05D004731 8.1e-160 567.4 371 74.7
HPP92_001184 Vanilla planifolia HOM05D003727 ORTHO05D004731 4.0e-159 565.1 371 75.7
SGA_v2.0_scaffold157G37383 Striga asiatica HOM05D003727 ORTHO05D004731 8.9e-159 563.9 434 67.3
CDE02G0044 Ceratophyllum demersum HOM05D003727 ORTHO05D002799 1.2e-158 563.5 365 75.6
SalBow8G0722 Salvia bowleyana HOM05D003727 ORTHO05D004731 2.0e-158 562.8 360 77.5
Lj3A840G128 Lonicera japonica HOM05D003727 ORTHO05D004731 2.6e-158 562.4 367 76.0
vmacro08010 Vaccinium macrocarpon HOM05D003727 ORTHO05D004731 4.4e-158 561.6 367 76.8
VMungo1215G3329 Vigna mungo HOM05D003727 ORTHO05D004731 7.5e-158 560.8 366 77.0
arahy.Tifrunner.gnm1.ann1.E3SS24 Arachis hypogaea HOM05D003727 ORTHO05D004731 4.9e-157 558.1 367 74.1
MBI19_g32733_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 4.9e-157 558.1 368 74.2
Solyc12g098930.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 8.3e-157 557.4 370 74.1
Sopen12g033680 Solanum pennellii HOM05D003727 ORTHO05D004731 1.9e-156 556.2 370 74.1
Nitab4.5_0000895g0180 Nicotiana tabacum HOM05D003727 ORTHO05D004731 5.4e-156 554.7 350 76.9
Os07g0637300 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 9.2e-156 553.9 367 73.8
PSO210G4254 Papaver somniferum HOM05D003727 ORTHO05D004731 6.0e-155 551.2 369 71.3
AUR62002558 Chenopodium quinoa HOM05D003727 ORTHO05D004731 1.3e-154 550.1 352 78.4
PSO761G0171 Papaver somniferum HOM05D003727 ORTHO05D004731 3.9e-154 548.5 369 71.3
Zm00001eb328730 Zea mays HOM05D003727 ORTHO05D004731 8.6e-154 547.4 367 73.3
PGSC0003DMG400004685 Solanum tuberosum HOM05D003727 ORTHO05D004731 1.9e-153 546.2 370 73.0
Zm00001eb018000 Zea mays HOM05D003727 ORTHO05D004731 1.9e-153 546.2 367 71.7
AL3G17510 Arabidopsis lyrata HOM05D003727 ORTHO05D004731 3.6e-152 542.0 273 96.7
Os03g0370000 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 3.8e-149 531.9 359 71.6
SHI00051 Sapria himalayana HOM05D003727 ORTHO05D004731 7.1e-148 527.7 397 69.5
SGA_v2.0_scaffold157G37388 Striga asiatica HOM05D003727 ORTHO05D004731 7.1e-148 527.7 373 71.8
SMO115G0066 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 3.0e-146 522.3 371 66.0
AagrBONN_evm.TU.Sc2ySwM_362.1196 Anthoceros agrestis HOM05D003727 ORTHO05D004731 2.1e-144 516.2 371 65.8
Mapoly0183s0013 Marchantia polymorpha HOM05D003727 ORTHO05D004731 6.2e-144 514.6 371 65.2
Pp3c9_2880 Physcomitrium patens HOM05D003727 ORTHO05D004731 1.4e-143 513.5 372 66.7
Pp3c15_8270 Physcomitrium patens HOM05D003727 ORTHO05D004731 2.4e-143 512.7 370 65.9
CDE01G0062 Ceratophyllum demersum HOM05D003727 ORTHO05D004731 9.9e-142 507.3 362 67.7
CBR_g238 Chara braunii HOM05D003727 ORTHO05D004731 3.8e-141 505.4 374 65.8
SEGI_06820 Sequoiadendron giganteum HOM05D003727 ORTHO05D004731 5.1e-138 495.0 360 65.3
Cre05.g241750 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 8.1e-136 487.6 368 64.1
Lj4g0016505 Lotus japonicus HOM05D003727 ORTHO05D004731 5.8e-134 481.5 370 66.2
unitig_8.g2888 Utricularia gibba HOM05D003727 ORTHO05D004731 2.4e-132 476.1 359 65.7
ECA246G0694 Erigeron canadensis HOM05D003727 ORTHO05D004731 1.2e-131 473.8 326 72.7
Nn4g25394 Nelumbo nucifera HOM05D003727 ORTHO05D004731 6.0e-131 471.5 284 80.6
MELO3C003205.2 Cucumis melo HOM05D003727 ORTHO05D004731 8.7e-130 467.6 281 82.2
MELO3C006749.2 Cucumis melo HOM05D003727 ORTHO05D004731 8.7e-130 467.6 280 82.1
Oeu037626.1 Olea europaea HOM05D003727 ORTHO05D004731 3.7e-128 462.2 289 78.5
TAR633G1110 Trochodendron aralioides HOM05D003727 ORTHO05D004731 6.2e-128 461.5 343 70.8
Dinv29512 Davidia involucrata HOM05D003727 ORTHO05D004731 1.5e-126 456.8 279 78.5
MCO15G342 Micromonas commoda HOM05D003727 ORTHO05D004731 2.4e-124 449.5 385 57.1
unitig_747.g21103 Utricularia gibba HOM05D003727 ORTHO05D004731 3.0e-122 442.6 327 67.9
SGA_v2.0_scaffold64G22028 Striga asiatica HOM05D003727 ORTHO05D004731 9.6e-121 437.6 278 78.4
SMO367G0119 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 9.0e-119 431.0 364 55.8
Glyma.13G119800 Glycine max HOM05D003727 ORTHO05D004731 5.5e-116 421.8 271 76.8
PRCOL_00006564 Prasinoderma coloniale HOM05D003727 ORTHO05D004731 1.0e-114 417.5 390 53.8
Cre06.g278451 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 8.7e-114 414.5 369 54.7
Dinv18024 Davidia involucrata HOM05D003727 ORTHO05D004731 5.7e-113 411.8 240 84.6
arahy.Tifrunner.gnm1.ann1.L2TMJG Arachis hypogaea HOM05D003727 ORTHO05D004731 2.8e-112 409.5 284 69.4
Zm00001eb394190 Zea mays HOM05D003727 ORTHO05D004731 1.7e-109 400.2 275 69.8
FAN07G0809 Fragaria x ananassa HOM05D003727 ORTHO05D004731 1.1e-89 334.3 198 81.3
Cc00_g15630 Coffea canephora HOM05D003727 ORTHO05D004731 2.0e-89 333.6 270 65.2
AUR62029978 Chenopodium quinoa HOM05D003727 ORTHO05D004731 9.1e-87 324.7 223 74.0
MD16G1136800 Malus domestica HOM05D003727 ORTHO05D004731 4.2e-84 315.8 178 86.0
BcaC08g45280 Brassica carinata HOM05D003727 ORTHO05D004731 9.7e-81 304.7 168 89.9
CSS0050306 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 1.7e-80 303.9 197 73.6
vmacro06806 Vaccinium macrocarpon HOM05D003727 ORTHO05D426773 3.7e-56 223.0 261 52.5
Cre06.g252300 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D034196 1.1e-47 194.9 437 29.3
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 3.2e-47 193.4 359 32.3
Cfa023761 Carpinus fangiana HOM05D003727 ORTHO05D034196 1.0e-45 188.3 393 27.5
Glyma.14G127500 Glycine max HOM05D003727 ORTHO05D004731 4.0e-42 176.4 114 79.8
Zm00001eb392210 Zea mays HOM05D003727 ORTHO05D444991 1.7e-37 161.0 119 65.5
Zm00001eb394790 Zea mays HOM05D003727 ORTHO05D441672 1.9e-36 157.5 147 57.8
Zm00001eb400710 Zea mays HOM05D003727 ORTHO05D445430 4.3e-36 156.4 119 63.9
Cfa027032 Carpinus fangiana HOM05D003727 ORTHO05D122316 3.4e-33 146.7 293 30.4
DCAR_023404 Daucus carota HOM05D002877 ORTHO05D003248 4.1e-31 139.8 84 76.2
Lsat_1_v5_gn_5_23680 Lactuca sativa HOM05D003727 ORTHO05D231959 5.4e-31 139.4 113 60.2
vmacro06805 Vaccinium macrocarpon HOM05D003727 ORTHO05D426993 4.5e-09 66.6 68 52.9
VMungo0251G3273 Vigna mungo HOM05D003727 ORTHO05D000132 5.8e-09 66.2 49 69.4


User provided reference genes

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