Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR079750 Cardamine hirsuta HOM05D007200 ORTHO05D009030 3.5e-155 551.6 281 100.0
AL3G15960 Arabidopsis lyrata HOM05D007200 ORTHO05D009030 2.2e-141 505.8 281 90.4
AT3G05410 Arabidopsis thaliana HOM05D007200 ORTHO05D009030 2.1e-139 499.2 281 89.3
Sp3g04270 Schrenkiella parvula HOM05D007200 ORTHO05D009030 6.0e-139 497.7 281 90.7
Carub.0003s0469 Capsella rubella HOM05D007200 ORTHO05D009030 1.9e-137 492.7 284 88.0
BcaC05g30148 Brassica carinata HOM05D007200 ORTHO05D009030 2.1e-136 489.2 281 87.5
Thhalv10021289m.g Eutrema salsugineum HOM05D007200 ORTHO05D009030 1.1e-135 486.9 281 87.9
BcaC05g30124 Brassica carinata HOM05D007200 ORTHO05D009030 5.3e-135 484.6 281 86.5
BolC5t34842H Brassica oleracea HOM05D007200 ORTHO05D000438 5.3e-135 484.6 281 86.8
BraA05t23030Z Brassica rapa HOM05D007200 ORTHO05D009030 2.0e-134 482.6 281 86.5
Aa31LG5G15970 Aethionema arabicum HOM05D007200 ORTHO05D009030 9.3e-132 473.8 281 85.1
THA.LOC104818708 Tarenaya hassleriana HOM05D007200 ORTHO05D009030 3.3e-121 438.7 281 78.6
BcaC05g30126 Brassica carinata HOM05D007200 ORTHO05D009030 1.6e-120 436.4 281 80.4
Ciclev10002020m.g Citrus clementina HOM05D007200 ORTHO05D009030 8.7e-106 387.5 275 70.5
Glyma.10G153100 Glycine max HOM05D007200 ORTHO05D009030 1.9e-105 386.3 249 74.7
FvH4_6g06280 Fragaria vesca HOM05D007200 ORTHO05D009030 5.3e-103 378.3 255 72.9
VMungo0720G1786 Vigna mungo HOM05D007200 ORTHO05D009030 5.3e-103 378.3 244 74.2
Phvul.007G196200 Phaseolus vulgaris HOM05D007200 ORTHO05D009030 6.9e-103 377.9 246 72.8
FAN14G1797 Fragaria x ananassa HOM05D007200 ORTHO05D009030 2.0e-102 376.3 255 72.5
RcHm_v2.0_Chr3g0455321 Rosa chinensis HOM05D007200 ORTHO05D009030 1.0e-101 374.0 252 73.4
Manes.08G119500 Manihot esculenta HOM05D007200 ORTHO05D009030 1.1e-100 370.5 262 70.6
CANSAT54G2021 Cannabis sativa HOM05D007200 ORTHO05D009030 1.4e-100 370.2 257 71.6
MD12G1216700 Malus domestica HOM05D007200 ORTHO05D009030 5.5e-100 368.2 253 71.5
AUR62005175 Chenopodium quinoa HOM05D007200 ORTHO05D009030 7.2e-100 367.9 285 65.6
Sabra05G0032400 Salix brachista HOM05D007200 ORTHO05D009030 1.6e-99 366.7 283 66.1
AUR62000793 Chenopodium quinoa HOM05D007200 ORTHO05D009030 2.7e-99 365.9 286 65.7
Lj9C128T5 Lonicera japonica HOM05D007200 ORTHO05D009030 3.6e-99 365.5 257 70.4
Haze_04164 Corylus avellana HOM05D007200 ORTHO05D009030 7.9e-99 364.4 264 67.8
FAN09G0829 Fragaria x ananassa HOM05D007200 ORTHO05D009030 1.0e-98 364.0 255 70.6
QL03p012758 Quercus lobata HOM05D007200 ORTHO05D009030 1.0e-98 364.0 279 66.3
CiPaw.07G020000 Carya illinoinensis HOM05D007200 ORTHO05D009030 2.3e-98 362.8 263 68.4
Psat6g149880 Pisum sativum HOM05D007200 ORTHO05D009030 3.9e-98 362.1 260 70.4
TPR.G6036 Trifolium pratense HOM05D007200 ORTHO05D009030 5.1e-98 361.7 260 68.5
Medtr1g083110 Medicago truncatula HOM05D007200 ORTHO05D009030 1.1e-97 360.5 247 71.7
Cfa006611 Carpinus fangiana HOM05D007200 ORTHO05D009030 5.7e-97 358.2 248 69.0
GSVIVG01031113001 Vitis vinifera HOM05D007200 ORTHO05D009030 1.7e-96 356.7 272 67.6
TWI12G0470 Tripterygium wilfordii HOM05D007200 ORTHO05D009030 3.7e-96 355.5 285 63.9
Aqoxy5G00700 Aquilegia oxysepala HOM05D007200 ORTHO05D009030 1.1e-95 354.0 249 68.3
Rhsim05G0141700 Rhododendron simsii HOM05D007200 ORTHO05D009030 1.1e-95 354.0 264 67.8
TAR365G0906 Trochodendron aralioides HOM05D007200 ORTHO05D009030 1.8e-95 353.2 271 65.3
Actinidia24645 Actinidia chinensis HOM05D007200 ORTHO05D009030 2.4e-95 352.8 287 64.8
Gohir.A11G266300 Gossypium hirsutum HOM05D007200 ORTHO05D009030 4.1e-95 352.1 265 66.0
Lj9C124T9 Lonicera japonica HOM05D007200 ORTHO05D009030 4.1e-95 352.1 281 64.8
TAR365G0308 Trochodendron aralioides HOM05D007200 ORTHO05D009030 4.1e-95 352.1 271 65.3
Atru.chr12.1493 Acer truncatum HOM05D007200 ORTHO05D009030 5.3e-95 351.7 282 63.5
CsaV3_2G006520 Cucumis sativus L. HOM05D007200 ORTHO05D009030 6.9e-95 351.3 276 65.6
Eucgr.B01933 Eucalyptus grandis HOM05D007200 ORTHO05D009030 6.9e-95 351.3 249 67.9
Nn3g21404 Nelumbo nucifera HOM05D007200 ORTHO05D009030 1.5e-94 350.1 250 68.8
Duzib177G0869 Durio zibethinus HOM05D007200 ORTHO05D009030 3.4e-94 349.0 252 70.2
Lsat_1_v5_gn_9_87521 Lactuca sativa HOM05D007200 ORTHO05D009030 3.4e-94 349.0 245 69.0
COL.COLO4_10491 Corchorus olitorius HOM05D007200 ORTHO05D009030 5.9e-94 348.2 258 68.6
Gorai.007G298700 Gossypium raimondii HOM05D007200 ORTHO05D009030 5.9e-94 348.2 265 65.3
Lalb_Chr21g0310651 Lupinus albus HOM05D007200 ORTHO05D009030 5.9e-94 348.2 273 64.1
Prupe.6G323000 Prunus persica HOM05D007200 ORTHO05D009030 7.7e-94 347.8 253 69.6
Gohir.D11G276600 Gossypium hirsutum HOM05D007200 ORTHO05D009030 2.2e-93 346.3 265 64.9
Nitab4.5_0002420g0030 Nicotiana tabacum HOM05D007200 ORTHO05D009030 2.2e-93 346.3 291 59.8
Sed0020284 Sechium edule HOM05D007200 ORTHO05D009030 2.2e-93 346.3 254 67.3
CSS0011307 Camellia sinensis var. sinensis HOM05D007200 ORTHO05D009030 5.0e-93 345.1 267 64.8
ECA236G3394 Erigeron canadensis HOM05D007200 ORTHO05D009030 8.5e-93 344.4 268 64.9
arahy.Tifrunner.gnm1.ann1.PH9A9F Arachis hypogaea HOM05D007200 ORTHO05D009030 1.1e-92 344.0 249 68.7
Thecc.05G310900 Theobroma cacao HOM05D007200 ORTHO05D009030 1.4e-92 343.6 250 69.6
arahy.Tifrunner.gnm1.ann1.H2XQXC Arachis hypogaea HOM05D007200 ORTHO05D009030 7.2e-92 341.3 249 68.3
Lj5g0005198 Lotus japonicus HOM05D007200 ORTHO05D009030 7.2e-92 341.3 247 67.6
Cpa.g.sc48.76 Carica papaya HOM05D007200 ORTHO05D009030 9.4e-92 340.9 294 61.6
Peaxi162Scf00071g00636 Petunia axillaris HOM05D007200 ORTHO05D009030 2.7e-91 339.3 274 62.8
PGR083G0889 Punica granatum HOM05D007200 ORTHO05D009030 7.9e-91 337.8 249 65.9
MELO3C004233.2 Cucumis melo HOM05D007200 ORTHO05D009030 2.3e-90 336.3 275 62.5
DCAR_001939 Daucus carota HOM05D007200 ORTHO05D009030 2.3e-90 336.3 265 61.5
Migut.O00553 Erythranthe guttata HOM05D007200 ORTHO05D009030 8.8e-90 334.3 275 62.9
HanXRQChr11g0339441 Helianthus annuus HOM05D007200 ORTHO05D009030 7.4e-89 331.3 270 63.3
EL10Ac4g09392 Beta vulgaris HOM05D007200 ORTHO05D009030 6.3e-88 328.2 278 61.9
Migut.N01991 Erythranthe guttata HOM05D007200 ORTHO05D009030 6.3e-88 328.2 275 61.8
PGSC0003DMG400007427 Solanum tuberosum HOM05D007200 ORTHO05D009030 8.2e-88 327.8 268 61.2
CAN.G321.37 Capsicum annuum HOM05D007200 ORTHO05D009030 4.1e-87 325.5 249 63.9
Solyc11g008480.2 Solanum lycopersicum HOM05D007200 ORTHO05D009030 4.1e-87 325.5 272 60.3
Ah.04g160430 Amaranthus hybridus HOM05D007200 ORTHO05D009030 9.1e-87 324.3 290 60.0
FAN02G4393 Fragaria x ananassa HOM05D007200 ORTHO05D009030 9.1e-87 324.3 226 71.2
Sopen11g004260 Solanum pennellii HOM05D007200 ORTHO05D009030 7.7e-86 321.2 257 61.9
FAN05G3823 Fragaria x ananassa HOM05D000179 ORTHO05D009030 8.5e-85 317.8 225 71.6
Cc02_g31060 Coffea canephora HOM05D007200 ORTHO05D009030 3.6e-83 312.4 250 64.4
MSTRG.27987 Avicennia marina HOM05D007200 ORTHO05D009030 4.7e-83 312.0 256 60.5
Nitab4.5_0009303g0010 Nicotiana tabacum HOM05D007200 ORTHO05D009030 1.0e-82 310.8 265 61.1
PSO210G0998 Papaver somniferum HOM05D007200 ORTHO05D009030 2.3e-82 309.7 251 62.2
CANSAT54G2778 Cannabis sativa HOM05D007200 ORTHO05D009030 4.0e-82 308.9 216 72.2
unitig_746.g26859 Utricularia gibba HOM05D004477 ORTHO05D005615 5.2e-82 308.5 278 57.9
Zm00001eb142170 Zea mays HOM05D007200 ORTHO05D009030 6.7e-82 308.1 259 57.5
SGA_v2.0_scaffold98G29315 Striga asiatica HOM05D007200 ORTHO05D009030 8.8e-82 307.8 263 58.6
vmacro19623 Vaccinium macrocarpon HOM05D007200 ORTHO05D009030 8.8e-82 307.8 264 62.9
MBI19_g12813_MAGBIO Magnolia biondii HOM05D007200 ORTHO05D009030 2.6e-81 306.2 232 64.7
ClCG02G015570 Citrullus lanatus HOM05D007200 ORTHO05D009030 4.8e-80 302.0 263 60.8
PSO832G2855 Papaver somniferum HOM05D007200 ORTHO05D009030 4.1e-79 298.9 251 60.6
ATR0706G032 Amborella trichopoda HOM05D007200 ORTHO05D009030 5.3e-79 298.5 262 57.6
CDE02G3507 Ceratophyllum demersum HOM05D007200 ORTHO05D009030 7.0e-79 298.1 252 56.7
Potri.005G027100 Populus trichocarpa HOM05D007200 ORTHO05D009030 9.4e-76 287.7 223 69.5
HPP92_006928 Vanilla planifolia HOM05D000065 ORTHO05D001606 1.1e-68 264.2 238 56.3
Pp3c2_22000 Physcomitrium patens HOM05D007200 ORTHO05D009030 3.3e-60 236.1 285 43.9
AagrBONN_evm.TU.Sc2ySwM_228.2760 Anthoceros agrestis HOM05D007200 ORTHO05D009030 2.8e-59 233.0 238 51.3
SMO140G0101 Selaginella moellendorffii HOM05D007200 ORTHO05D009030 6.8e-58 228.4 239 49.0
Os01g0934400 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 3.4e-57 226.1 178 61.8
Mapoly0092s0016 Marchantia polymorpha HOM05D007200 ORTHO05D009030 7.5e-57 224.9 247 44.9
Hund07085 Selenicereus undatus HOM05D007200 ORTHO05D009030 4.7e-51 205.7 159 66.7
Sc16g0008540 Simmondsia chinensis HOM05D007200 ORTHO05D009030 8.0e-51 204.9 141 69.5
AUR62004827 Chenopodium quinoa HOM05D007200 ORTHO05D009030 4.6e-46 189.1 155 63.2
CBR_g32304 Chara braunii HOM05D007200 ORTHO05D009030 2.3e-45 186.8 268 39.6
SGA_v2.0_scaffold95G28806 Striga asiatica HOM05D007200 ORTHO05D009030 1.2e-43 181.0 169 57.4
C05p61820 Brassica napus HOM05D000205 ORTHO05D000438 1.8e-42 177.2 155 64.5
Cre09.g389578 Chlamydomonas reinhardtii HOM05D007200 ORTHO05D009030 4.4e-41 172.6 257 40.1
PRCOL_00003141 Prasinoderma coloniale HOM05D007200 ORTHO05D009030 1.9e-36 157.1 255 40.0
MCO07G015 Micromonas commoda HOM05D007200 ORTHO05D009030 2.1e-35 153.7 240 37.1
Oeu012109.1 Olea europaea HOM05D007200 ORTHO05D009030 2.6e-33 146.7 104 65.4
Actinidia19786 Actinidia chinensis HOM05D007200 ORTHO05D009030 1.6e-30 137.5 107 62.6
MD04G1202900 Malus domestica HOM05D007200 ORTHO05D009030 1.4e-23 114.4 120 56.7
Os01g0934350 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 8.1e-19 98.6 75 56.0
AUR62032114 Chenopodium quinoa HOM05D002933 ORTHO05D007742 1.8e-10 70.9 225 24.4
CAN.G1228.6 Capsicum annuum HOM05D002933 ORTHO05D007742 2.4e-10 70.5 184 27.7
AUR62039657 Chenopodium quinoa HOM05D002933 ORTHO05D007742 4.0e-10 69.7 226 24.3
BcaC02g09745 Brassica carinata HOM05D002933 ORTHO05D007742 1.2e-09 68.2 185 27.6
BolC4t25275H Brassica oleracea HOM05D002933 ORTHO05D007742 1.2e-09 68.2 185 27.6
PGSC0003DMG400024531 Solanum tuberosum HOM05D002933 ORTHO05D007742 1.2e-09 68.2 184 26.6
A04p04610 Brassica napus HOM05D002933 ORTHO05D007742 2.0e-09 67.4 185 27.6
BraA04t16171Z Brassica rapa HOM05D002933 ORTHO05D007742 2.0e-09 67.4 185 27.6
BcaB02g08429 Brassica carinata HOM05D002933 ORTHO05D007742 2.6e-09 67.0 185 28.1
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 4.5e-09 66.2 232 20.7
Carub.0005s2198 Capsella rubella HOM05D002933 ORTHO05D007742 4.5e-09 66.2 184 26.1
Thhalv10010685m.g Eutrema salsugineum HOM05D002933 ORTHO05D007742 5.8e-09 65.9 185 26.5
Solyc03g114930.3 Solanum lycopersicum HOM05D002933 ORTHO05D007742 5.8e-09 65.9 238 26.1
Sopen03g034010 Solanum pennellii HOM05D002933 ORTHO05D007742 5.8e-09 65.9 184 26.6
Hund02566 Selenicereus undatus HOM05D002933 ORTHO05D007742 3.8e-08 63.2 185 25.4
EL10Ac5g11164 Beta vulgaris HOM05D002933 ORTHO05D007742 6.4e-08 62.4 225 21.3
Ciclev10032564m.g Citrus clementina HOM05D002933 ORTHO05D007742 9.3e-07 58.5 187 24.6


User provided reference genes

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