Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR076740 Cardamine hirsuta HOM05D000247 ORTHO05D005467 4.2e-83 311.2 149 100.0
AL3G12140 Arabidopsis lyrata HOM05D000247 ORTHO05D005467 3.5e-69 265.0 131 95.4
AT3G02730 Arabidopsis thaliana HOM05D000247 ORTHO05D005467 4.2e-67 258.1 131 92.4
Carub.0003s0183 Capsella rubella HOM05D000247 ORTHO05D005467 4.7e-66 254.6 132 92.4
Sp3g01760 Schrenkiella parvula HOM05D000247 ORTHO05D005467 1.8e-65 252.7 131 90.8
BcaC05g30514 Brassica carinata HOM05D000247 ORTHO05D005467 4.0e-65 251.5 134 88.8
BNapus_Darmor_BZH_scaffold_99p00230 Brassica napus HOM05D000247 ORTHO05D005467 1.2e-64 250.0 133 91.0
A05p44370 Brassica napus HOM05D000247 ORTHO05D005467 2.6e-64 248.8 134 88.1
BolC1t05881H Brassica oleracea HOM05D000247 ORTHO05D005467 5.7e-64 247.7 133 90.2
BraA01t04621Z Brassica rapa HOM05D000247 ORTHO05D005467 6.3e-63 244.2 134 89.6
BraA06t23293Z Brassica rapa HOM05D000247 ORTHO05D005467 1.4e-62 243.0 135 88.1
Thhalv10021615m.g Eutrema salsugineum HOM05D000247 ORTHO05D005467 3.1e-62 241.9 134 88.8
C09p75870 Brassica napus HOM05D000247 ORTHO05D005467 5.4e-62 241.1 134 85.8
BolC5t35070H Brassica oleracea HOM05D000247 ORTHO05D005467 5.4e-62 241.1 134 85.8
Aa31LG5G13200 Aethionema arabicum HOM05D000247 ORTHO05D005467 7.0e-62 240.7 134 85.8
AT5G16400 Arabidopsis thaliana HOM05D000247 ORTHO05D005467 3.9e-52 208.4 142 76.1
AL6G27330 Arabidopsis lyrata HOM05D000247 ORTHO05D005467 2.8e-50 202.2 143 74.1
Sp6g27770 Schrenkiella parvula HOM05D000247 ORTHO05D005467 5.2e-49 198.0 141 72.3
Carub.0006s1459 Capsella rubella HOM05D000247 ORTHO05D005467 1.2e-48 196.8 141 70.9
CARHR196860 Cardamine hirsuta HOM05D000247 ORTHO05D005467 2.6e-48 195.7 144 70.8
Thhalv10014778m.g Eutrema salsugineum HOM05D000247 ORTHO05D005467 2.0e-45 186.0 143 67.1
C02p08310 Brassica napus HOM05D000247 ORTHO05D005467 7.8e-45 184.1 144 66.0
BolC2t06751H Brassica oleracea HOM05D000247 ORTHO05D005467 3.9e-44 181.8 136 66.9
A02p03510 Brassica napus HOM05D000247 ORTHO05D005467 5.0e-44 181.4 143 67.8
BraA02t05322Z Brassica rapa HOM05D000247 ORTHO05D005467 1.9e-43 179.5 143 66.4
THA.LOC104802956 Tarenaya hassleriana HOM05D000247 ORTHO05D005467 1.2e-42 176.8 139 69.8
THA.LOC104820923 Tarenaya hassleriana HOM05D000247 ORTHO05D005467 1.2e-40 170.2 138 65.2
CANSAT54G0629 Cannabis sativa HOM05D000247 ORTHO05D005467 1.8e-33 146.4 125 60.8
Cpa.g.sc39.18 Carica papaya HOM05D000247 ORTHO05D005467 2.4e-33 146.0 132 56.8
Prupe.6G362500 Prunus persica HOM05D000247 ORTHO05D005467 8.9e-33 144.1 110 65.5
TPR.G23770 Trifolium pratense HOM05D000247 ORTHO05D005467 2.6e-32 142.5 94 73.4
Solyc05g056300.4 Solanum lycopersicum HOM05D000247 ORTHO05D005467 9.9e-32 140.6 136 55.1
Sopen05g034690 Solanum pennellii HOM05D000247 ORTHO05D005467 9.9e-32 140.6 136 55.1
Ca_07997_v3 Cicer arietinum L. HOM05D000247 ORTHO05D005467 1.3e-31 140.2 103 67.0
Medtr7g080250 Medicago truncatula HOM05D000247 ORTHO05D005467 2.2e-31 139.4 94 74.5
Potri.019G054800 Populus trichocarpa HOM05D000247 ORTHO05D005467 4.9e-31 138.3 141 53.2
ClCG03G011670 Citrullus lanatus HOM05D000247 ORTHO05D005467 6.4e-31 137.9 131 55.0
Eucgr.B01424 Eucalyptus grandis HOM05D000247 ORTHO05D005467 8.4e-31 137.5 83 72.3
Sed0000929 Sechium edule HOM05D000247 ORTHO05D005467 8.4e-31 137.5 76 81.6
CsaV3_1G044160 Cucumis sativus L. HOM05D000247 ORTHO05D005467 1.9e-30 136.3 131 55.0
TWI75G1857 Tripterygium wilfordii HOM05D000247 ORTHO05D005467 1.9e-30 136.3 141 53.9
Dinv15375 Davidia involucrata HOM05D000247 ORTHO05D005467 2.4e-30 136.0 129 55.0
Gohir.A13G114500 Gossypium hirsutum HOM05D000247 ORTHO05D005467 2.4e-30 136.0 83 74.7
Gohir.D13G117400 Gossypium hirsutum HOM05D000247 ORTHO05D005467 2.4e-30 136.0 83 74.7
Gorai.013G132000 Gossypium raimondii HOM05D000247 ORTHO05D005467 2.4e-30 136.0 83 74.7
HanXRQChr17g0556061 Helianthus annuus HOM05D000247 ORTHO05D005467 2.4e-30 136.0 122 61.5
Thecc.05G192000 Theobroma cacao HOM05D000247 ORTHO05D005467 3.2e-30 135.6 86 72.1
Manes.13G004600 Manihot esculenta HOM05D000247 ORTHO05D005467 4.1e-30 135.2 88 75.0
Aqoxy5G00017 Aquilegia oxysepala HOM05D000247 ORTHO05D005467 5.4e-30 134.8 84 75.0
CiPaw.07G081500 Carya illinoinensis HOM05D000247 ORTHO05D005467 7.1e-30 134.4 103 66.0
Lsat_1_v5_gn_2_17480 Lactuca sativa HOM05D000247 ORTHO05D005467 7.1e-30 134.4 81 79.0
Peaxi162Scf00353g00731 Petunia axillaris HOM05D000247 ORTHO05D005467 7.1e-30 134.4 95 69.5
Atru.chr12.1750 Acer truncatum HOM05D000247 ORTHO05D005467 9.2e-30 134.0 99 60.6
Glyma.18G243200 Glycine max HOM05D000247 ORTHO05D005467 1.2e-29 133.7 85 75.3
SGA_v2.0_scaffold122G33187 Striga asiatica HOM05D000247 ORTHO05D005467 1.2e-29 133.7 80 77.5
ECA238G1267 Erigeron canadensis HOM05D000261 ORTHO05D000566 1.6e-29 133.3 137 54.0
Phvul.008G053300 Phaseolus vulgaris HOM05D000247 ORTHO05D005467 2.1e-29 132.9 78 79.5
RcHm_v2.0_Chr3g0447721 Rosa chinensis HOM05D000247 ORTHO05D005467 2.1e-29 132.9 83 71.1
FvH4_6g00380 Fragaria vesca HOM05D000247 ORTHO05D005467 2.7e-29 132.5 83 71.1
FAN14G3072 Fragaria x ananassa HOM05D000247 ORTHO05D005467 2.7e-29 132.5 83 71.1
Hma1.2p1_0609F.1_g188510 Hydrangea macrophylla HOM05D000247 ORTHO05D005467 2.7e-29 132.5 83 72.3
Sed0017668 Sechium edule HOM05D000247 ORTHO05D005467 2.7e-29 132.5 132 53.8
MELO3C010009.2 Cucumis melo HOM05D000247 ORTHO05D005467 3.5e-29 132.1 76 77.6
FAN09G0601 Fragaria x ananassa HOM05D000247 ORTHO05D005467 3.5e-29 132.1 83 69.9
Actinidia06800 Actinidia chinensis HOM05D000247 ORTHO05D005467 4.6e-29 131.7 101 67.3
PGR119G0647 Punica granatum HOM05D000247 ORTHO05D005467 4.6e-29 131.7 86 70.9
arahy.Tifrunner.gnm1.ann1.2R4S5U Arachis hypogaea HOM05D000247 ORTHO05D005467 6.0e-29 131.3 78 76.9
arahy.Tifrunner.gnm1.ann1.MI3IQM Arachis hypogaea HOM05D000247 ORTHO05D005467 6.0e-29 131.3 78 76.9
Eucgr.H01629 Eucalyptus grandis HOM05D000247 ORTHO05D005467 6.0e-29 131.3 85 68.2
Nitab4.5_0013647g0010 Nicotiana tabacum HOM05D000247 ORTHO05D005467 6.0e-29 131.3 135 52.6
PGR031G3232 Punica granatum HOM05D000247 ORTHO05D005467 6.0e-29 131.3 82 72.0
Rhsim10G0057900 Rhododendron simsii HOM05D000247 ORTHO05D005467 6.0e-29 131.3 78 75.6
FAN05G0844 Fragaria x ananassa HOM05D000247 ORTHO05D005467 7.8e-29 131.0 83 69.9
VMungo1383G3087 Vigna mungo HOM05D000247 ORTHO05D005467 7.8e-29 131.0 78 78.2
Lj1g0021551 Lotus japonicus HOM05D000247 ORTHO05D005467 1.0e-28 130.6 85 72.9
FAN02G4262 Fragaria x ananassa HOM05D000247 ORTHO05D005467 1.3e-28 130.2 83 69.9
MD04G1246200 Malus domestica HOM05D000247 ORTHO05D005467 1.3e-28 130.2 122 55.7
MD12G1263900 Malus domestica HOM05D000247 ORTHO05D005467 1.3e-28 130.2 109 60.6
Nitab4.5_0000582g0020 Nicotiana tabacum HOM05D000247 ORTHO05D005467 1.3e-28 130.2 132 53.8
PGSC0003DMG400023333 Solanum tuberosum HOM05D000247 ORTHO05D005467 1.3e-28 130.2 134 53.0
CSS0010092 Camellia sinensis var. sinensis HOM05D000247 ORTHO05D005467 1.7e-28 129.8 76 81.6
Actinidia03277 Actinidia chinensis HOM05D000247 ORTHO05D005467 2.3e-28 129.4 79 77.2
MBI11_g00130_MAGBIO Magnolia biondii HOM05D000247 ORTHO05D005467 2.3e-28 129.4 86 67.4
Rhsim05G0167700 Rhododendron simsii HOM05D000247 ORTHO05D005467 2.3e-28 129.4 78 75.6
TWI36G0515 Tripterygium wilfordii HOM05D000247 ORTHO05D005467 2.3e-28 129.4 138 52.9
vmacro19615 Vaccinium macrocarpon HOM05D000247 ORTHO05D005467 2.3e-28 129.4 95 64.2
ATR0824G128 Amborella trichopoda HOM05D000247 ORTHO05D005467 3.9e-28 128.6 76 75.0
COL.COLO4_33466 Corchorus olitorius HOM05D000247 ORTHO05D005467 3.9e-28 128.6 76 75.0
Lsat_1_v5_gn_0_10780 Lactuca sativa HOM05D000247 ORTHO05D005467 3.9e-28 128.6 102 64.7
Nn3g20156 Nelumbo nucifera HOM05D000247 ORTHO05D005467 5.1e-28 128.3 83 68.7
Psat3g102640 Pisum sativum HOM05D000247 ORTHO05D005467 5.1e-28 128.3 85 71.8
Ciclev10013409m.g Citrus clementina HOM05D000247 ORTHO05D005467 6.6e-28 127.9 81 69.1
GSVIVG01019070001 Vitis vinifera HOM05D000247 ORTHO05D005467 6.6e-28 127.9 134 53.0
Lalb_Chr01g0020531 Lupinus albus HOM05D000247 ORTHO05D005467 8.7e-28 127.5 87 70.1
CDE05G1910 Ceratophyllum demersum HOM05D000247 ORTHO05D005467 1.1e-27 127.1 89 68.5
Duzib177G0105 Durio zibethinus HOM05D000247 ORTHO05D005467 1.1e-27 127.1 99 62.6
Sabra19G0063700 Salix brachista HOM05D000247 ORTHO05D005467 1.5e-27 126.7 137 51.8
Cc09_g03800 Coffea canephora HOM05D000247 ORTHO05D005467 1.9e-27 126.3 96 65.6
Hund07358 Selenicereus undatus HOM05D000247 ORTHO05D005467 1.9e-27 126.3 80 73.8
ECA232G0920 Erigeron canadensis HOM05D000247 ORTHO05D005467 2.5e-27 125.9 80 73.8
CAN.G1921.8 Capsicum annuum HOM05D000247 ORTHO05D005467 3.3e-27 125.6 66 84.8
Cfa006252 Carpinus fangiana HOM05D000247 ORTHO05D005467 3.3e-27 125.6 80 72.5
Haze_04582 Corylus avellana HOM05D000247 ORTHO05D005467 3.3e-27 125.6 81 71.6
Migut.F01866 Erythranthe guttata HOM05D000247 ORTHO05D005467 4.3e-27 125.2 65 81.5
CDE02G0703 Ceratophyllum demersum HOM05D000247 ORTHO05D005467 5.6e-27 124.8 140 52.1
Ah.04g159050 Amaranthus hybridus HOM05D000247 ORTHO05D005467 7.3e-27 124.4 124 51.6
SalBow1G5091 Salvia bowleyana HOM05D000247 ORTHO05D005467 7.3e-27 124.4 89 65.2
Lalb_Chr03g0038711 Lupinus albus HOM05D000247 ORTHO05D005467 1.2e-26 123.6 87 66.7
Ah.06g195420 Amaranthus hybridus HOM05D000247 ORTHO05D005467 1.6e-26 123.2 128 52.3
Os01g0913000 Oryza sativa ssp. japonica HOM05D000247 ORTHO05D005467 1.6e-26 123.2 113 56.6
CDE06G0663 Ceratophyllum demersum HOM05D000247 ORTHO05D005467 2.1e-26 122.9 141 51.1
HanXRQChr08g0220871 Helianthus annuus HOM05D000247 ORTHO05D005467 2.1e-26 122.9 134 51.5
SalBow6G2018 Salvia bowleyana HOM05D000247 ORTHO05D005467 2.8e-26 122.5 70 75.7
Zm00001eb354270 Zea mays HOM05D000247 ORTHO05D005467 3.6e-26 122.1 143 47.6
MSTRG.9245 Avicennia marina HOM05D000247 ORTHO05D005467 4.7e-26 121.7 80 70.0
unitig_52.g17512 Utricularia gibba HOM05D000247 ORTHO05D005467 6.2e-26 121.3 122 52.5
Migut.F02110 Erythranthe guttata HOM05D000247 ORTHO05D005467 8.1e-26 120.9 79 72.2
Oeu034780.1 Olea europaea HOM05D000247 ORTHO05D005467 8.1e-26 120.9 65 81.5
Sc09g0001410 Simmondsia chinensis HOM05D000247 ORTHO05D005467 8.1e-26 120.9 90 63.3
AUR62000296 Chenopodium quinoa HOM05D000247 ORTHO05D005467 1.8e-25 119.8 81 65.4
PSO170G0238 Papaver somniferum HOM05D000247 ORTHO05D005467 3.1e-25 119.0 78 70.5
Zm00001eb418040 Zea mays HOM05D000247 ORTHO05D005467 4.0e-25 118.6 80 67.5
AUR62006642 Chenopodium quinoa HOM05D000247 ORTHO05D005467 5.2e-25 118.2 81 64.2
Oeu009736.1 Olea europaea HOM05D000247 ORTHO05D005467 6.9e-25 117.9 66 75.8
HPP92_000446 Vanilla planifolia HOM05D000247 ORTHO05D005467 1.2e-24 117.1 65 78.5
PSO357G0377 Papaver somniferum HOM05D000247 ORTHO05D005467 2.6e-24 115.9 145 46.9
EL10Ac4g09997 Beta vulgaris HOM05D000247 ORTHO05D005467 3.4e-24 115.5 106 51.9
Lj1C578G15 Lonicera japonica HOM05D000247 ORTHO05D005467 1.7e-23 113.2 82 67.1
Mapoly0040s0138 Marchantia polymorpha HOM05D000247 ORTHO05D005467 4.9e-23 111.7 82 59.8
unitig_62.g23541 Utricularia gibba HOM05D000247 ORTHO05D005467 1.1e-22 110.5 65 69.2
SMO203G0060 Selaginella moellendorffii HOM05D000247 ORTHO05D005467 9.3e-22 107.5 67 64.2
Pp3c4_3890 Physcomitrium patens HOM05D000247 ORTHO05D005467 1.6e-21 106.7 83 60.2
CDE05G1927 Ceratophyllum demersum HOM05D000247 ORTHO05D005467 3.0e-20 102.4 64 76.6
BNapus_Darmor_BZH_scaffold_122p00200 Brassica napus HOM05D000247 ORTHO05D005467 3.8e-15 85.5 52 82.7
AagrBONN_evm.TU.Sc2ySwM_369.147 Anthoceros agrestis HOM05D000247 ORTHO05D005467 6.0e-13 78.2 60 51.7
Cre05.g243050 Chlamydomonas reinhardtii HOM05D000247 ORTHO05D005467 1.8e-12 76.6 60 48.3
Glyma.09G249200 Glycine max HOM05D000247 ORTHO05D005467 8.7e-12 74.3 55 69.1
Pp3c9_20570 Physcomitrium patens HOM05D001256 ORTHO05D000288 4.8e-10 68.6 134 33.6
DCAR_023864 Daucus carota HOM05D000247 ORTHO05D005467 8.1e-10 67.8 48 68.8
Lsat_1_v5_gn_5_43200 Lactuca sativa HOM05D000247 ORTHO05D005467 5.3e-09 65.1 72 55.6
CiPaw.10G165700 Carya illinoinensis HOM05D000247 ORTHO05D000288 4.5e-08 62.0 89 40.4
Lsat_1_v5_gn_2_107941 Lactuca sativa HOM05D002474 ORTHO05D005260 5.8e-08 61.6 36 83.3
Pp3c15_21760 Physcomitrium patens HOM05D001256 ORTHO05D000288 7.6e-08 61.2 84 40.5
PSO063G2697 Papaver somniferum HOM05D001256 ORTHO05D001141 1.7e-07 60.1 70 31.4
Cre01.g066552 Chlamydomonas reinhardtii HOM05D000247 ORTHO05D005467 2.2e-07 59.7 57 45.6
AagrBONN_evm.TU.Sc2ySwM_344.2998 Anthoceros agrestis HOM05D005628 ORTHO05D005467 2.9e-07 59.3 89 31.5
Haze_26562 Corylus avellana HOM05D000247 ORTHO05D000288 3.8e-07 58.9 53 49.1
PSO832G0119 Papaver somniferum HOM05D001256 ORTHO05D001141 3.8e-07 58.9 70 31.4
MELO3C025230.2 Cucumis melo HOM05D000247 ORTHO05D000288 4.9e-07 58.5 86 39.5
PRCOL_00003728 Prasinoderma coloniale HOM05D005628 ORTHO05D005467 4.9e-07 58.5 50 52.0
Mapoly0134s0027 Marchantia polymorpha HOM05D000247 ORTHO05D000288 6.4e-07 58.2 61 41.0
CDE02G3611 Ceratophyllum demersum HOM05D001256 ORTHO05D001141 8.4e-07 57.8 58 34.5
Haze_27143 Corylus avellana HOM05D005403 ORTHO05D006572 8.4e-07 57.8 52 48.1
Mapoly0118s0007 Marchantia polymorpha HOM05D001256 ORTHO05D000288 1.1e-06 57.4 135 32.6
MSTRG.665 Avicennia marina HOM05D000247 ORTHO05D000288 2.4e-06 56.2 68 38.2
MBI04_g36310_MAGBIO Magnolia biondii HOM05D004059 ORTHO05D004591 2.4e-06 56.2 70 30.0
SGA_v2.0_scaffold306G48029 Striga asiatica HOM05D000803 ORTHO05D009288 2.4e-06 56.2 137 28.5
MSTRG.663 Avicennia marina HOM05D000247 ORTHO05D000288 3.2e-06 55.8 68 38.2
CBR_g30326 Chara braunii HOM05D001256 ORTHO05D001141 3.2e-06 55.8 56 39.3
CsaV3_4G027270 Cucumis sativus L. HOM05D000247 ORTHO05D000288 3.2e-06 55.8 43 55.8
PRCOL_00001351 Prasinoderma coloniale HOM05D001256 ORTHO05D001141 3.2e-06 55.8 126 27.8
BraA03t12808Z Brassica rapa HOM05D000050 ORTHO05D000288 4.2e-06 55.5 94 35.1
Cre05.g248500 Chlamydomonas reinhardtii HOM05D000247 ORTHO05D000288 4.2e-06 55.5 60 41.7
MELO3C010974.2 Cucumis melo HOM05D000247 ORTHO05D000288 4.2e-06 55.5 68 36.8
Mapoly0022s0042 Marchantia polymorpha HOM05D000247 ORTHO05D000288 4.2e-06 55.5 69 37.7
Actinidia11496 Actinidia chinensis HOM05D000247 ORTHO05D000288 5.5e-06 55.1 126 33.3
AagrBONN_evm.TU.Sc2ySwM_117.1964 Anthoceros agrestis HOM05D000247 ORTHO05D000288 5.5e-06 55.1 38 52.6
CsaV3_2G029110 Cucumis sativus L. HOM05D000247 ORTHO05D000288 5.5e-06 55.1 68 35.3
Mapoly0025s0103 Marchantia polymorpha HOM05D001256 ORTHO05D001141 5.5e-06 55.1 61 34.4
Nn2g10252 Nelumbo nucifera HOM05D000247 ORTHO05D000288 5.5e-06 55.1 71 39.4
Pp3c2_11410 Physcomitrium patens HOM05D000247 ORTHO05D000288 5.5e-06 55.1 63 39.7
Peaxi162Scf00141g01016 Petunia axillaris HOM05D000247 ORTHO05D000288 7.1e-06 54.7 70 40.0
SEGI_06061 Sequoiadendron giganteum HOM05D000247 ORTHO05D000288 7.1e-06 54.7 38 55.3
CiPaw.09G222700 Carya illinoinensis HOM05D000247 ORTHO05D000288 9.3e-06 54.3 70 38.6
MCO15G471 Micromonas commoda HOM05D000247 ORTHO05D000288 9.3e-06 54.3 40 52.5
Pp3c1_28390 Physcomitrium patens HOM05D000247 ORTHO05D000288 9.3e-06 54.3 67 38.8
Sed0001593 Sechium edule HOM05D000247 ORTHO05D000288 9.3e-06 54.3 68 39.7
THA.LOC104808018 Tarenaya hassleriana HOM05D000247 ORTHO05D000288 9.3e-06 54.3 61 39.3


User provided reference genes

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