Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR074750 Cardamine hirsuta HOM05D005732 ORTHO05D007062 6.1e-36 153.7 80 100.0
Thhalv10019180m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 1.4e-27 125.9 71 93.0
AL2G41770 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 2.3e-27 125.2 71 93.0
Sp5g35990 Schrenkiella parvula HOM05D005732 ORTHO05D007062 2.3e-27 125.2 71 93.0
AT1G79780 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 2.5e-26 121.7 71 91.5
Carub.0002s2773 Capsella rubella HOM05D005732 ORTHO05D007062 3.3e-26 121.3 72 87.5
A07p26310 Brassica napus HOM05D005732 ORTHO05D007062 1.3e-25 119.4 71 88.7
C06p28700 Brassica napus HOM05D005732 ORTHO05D007062 1.3e-25 119.4 71 88.7
BraA07t30275Z Brassica rapa HOM05D005732 ORTHO05D007062 1.3e-25 119.4 71 88.7
BolC6t38039H Brassica oleracea HOM05D005732 ORTHO05D007062 8.2e-25 116.7 71 87.3
Aa31LG4G50 Aethionema arabicum HOM05D005732 ORTHO05D007062 4.1e-24 114.4 74 82.4
THA.LOC104813551 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 2.5e-21 105.1 71 77.5
CARHR049040 Cardamine hirsuta HOM05D005732 ORTHO05D007062 7.0e-16 87.0 46 89.1
BolC3t17024H Brassica oleracea HOM05D005732 ORTHO05D007062 1.2e-15 86.3 70 57.1
Cpa.g.c29422 Carica papaya HOM05D005732 ORTHO05D007062 1.2e-15 86.3 73 58.9
THA.LOC104817966 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 1.2e-15 86.3 76 59.2
BcaC01g03830 Brassica carinata HOM05D005732 ORTHO05D007062 2.0e-15 85.5 70 55.7
BolC3t17097H Brassica oleracea HOM05D005732 ORTHO05D007062 2.0e-15 85.5 70 55.7
A03p39750 Brassica napus HOM05D005732 ORTHO05D007062 3.5e-15 84.7 70 55.7
FvH4_6g32160 Fragaria vesca HOM05D005732 ORTHO05D007062 4.5e-15 84.3 73 58.9
PSO832G1217 Papaver somniferum HOM05D005732 ORTHO05D007062 4.5e-15 84.3 70 61.4
Ca_23241_v3 Cicer arietinum L. HOM05D005732 ORTHO05D007062 7.7e-15 83.6 70 61.4
PSO173G0088 Papaver somniferum HOM05D005732 ORTHO05D007062 7.7e-15 83.6 70 61.4
FAN09G2308 Fragaria x ananassa HOM05D005732 ORTHO05D007062 1.3e-14 82.8 73 57.5
Lalb_Chr04g0262901 Lupinus albus HOM05D005732 ORTHO05D007062 1.3e-14 82.8 75 60.0
BraA03t13125Z Brassica rapa HOM05D005732 ORTHO05D007062 1.7e-14 82.4 69 55.1
FAN02G4216 Fragaria x ananassa HOM05D005732 ORTHO05D007062 1.7e-14 82.4 73 57.5
FAN14G0018 Fragaria x ananassa HOM05D005732 ORTHO05D007062 1.7e-14 82.4 73 57.5
C03p48190 Brassica napus HOM05D005732 ORTHO05D007062 2.2e-14 82.0 65 53.8
Cfa003665 Carpinus fangiana HOM05D005732 ORTHO05D007062 2.2e-14 82.0 70 61.4
Haze_15828 Corylus avellana HOM05D005732 ORTHO05D007062 2.2e-14 82.0 70 61.4
FAN05G5290 Fragaria x ananassa HOM05D005732 ORTHO05D007062 2.2e-14 82.0 73 57.5
BcaB06g25723 Brassica carinata HOM05D005732 ORTHO05D007062 2.9e-14 81.6 70 54.3
BcaC05g28895 Brassica carinata HOM05D005732 ORTHO05D007062 2.9e-14 81.6 76 53.9
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 2.9e-14 81.6 73 54.8
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 2.9e-14 81.6 73 54.8
CiPaw.01G232900 Carya illinoinensis HOM05D005732 ORTHO05D007062 2.9e-14 81.6 70 62.9
RcHm_v2.0_Chr2g0140051 Rosa chinensis HOM05D005732 ORTHO05D007062 2.9e-14 81.6 70 60.0
Carub.0003s1605 Capsella rubella HOM05D005732 ORTHO05D007062 3.8e-14 81.3 70 55.7
Medtr8g013900 Medicago truncatula HOM05D005732 ORTHO05D007062 3.8e-14 81.3 70 60.0
Psat4g197440 Pisum sativum HOM05D005732 ORTHO05D007062 3.8e-14 81.3 70 58.6
GSVIVG01017014001 Vitis vinifera HOM05D005732 ORTHO05D007062 3.8e-14 81.3 70 60.0
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 5.0e-14 80.9 73 56.2
AL3G29050 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 6.5e-14 80.5 70 54.3
BcaB04g18894 Brassica carinata HOM05D005732 ORTHO05D007062 6.5e-14 80.5 70 54.3
BraA05t22147Z Brassica rapa HOM05D005732 ORTHO05D007062 6.5e-14 80.5 70 55.7
Thhalv10021518m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 6.5e-14 80.5 70 55.7
CSS0032474 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 8.5e-14 80.1 70 60.0
QL05p020542 Quercus lobata HOM05D005732 ORTHO05D007062 8.5e-14 80.1 70 61.4
Sp3g14670 Schrenkiella parvula HOM05D005732 ORTHO05D007062 8.5e-14 80.1 70 54.3
Glyma.07G017000 Glycine max HOM05D005732 ORTHO05D007062 1.1e-13 79.7 70 60.0
Lj3g0008110 Lotus japonicus HOM05D005732 ORTHO05D007062 1.1e-13 79.7 70 57.1
PGR102G2433 Punica granatum HOM05D005732 ORTHO05D007062 1.1e-13 79.7 70 58.6
AT3G16300 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 1.5e-13 79.3 70 57.1
Atru.chr1.3497 Acer truncatum HOM05D005732 ORTHO05D007062 1.9e-13 79.0 76 55.3
Sc15g0001950 Simmondsia chinensis HOM05D005732 ORTHO05D007062 1.9e-13 79.0 71 57.7
Thecc.06G097400 Theobroma cacao HOM05D005732 ORTHO05D007062 1.9e-13 79.0 70 58.6
TWI75G0681 Tripterygium wilfordii HOM05D005732 ORTHO05D007062 1.9e-13 79.0 70 58.6
Ciclev10026574m.g Citrus clementina HOM05D005732 ORTHO05D007062 2.5e-13 78.6 75 54.7
EL10Ac9g22102 Beta vulgaris HOM05D005732 ORTHO05D007062 3.2e-13 78.2 70 58.6
CSS0002541 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 3.2e-13 78.2 70 58.6
Dinv37994 Davidia involucrata HOM05D005732 ORTHO05D007062 3.2e-13 78.2 70 57.1
Potri.001G188000 Populus trichocarpa HOM05D005732 ORTHO05D007062 3.2e-13 78.2 75 58.7
Prupe.3G061300 Prunus persica HOM05D005732 ORTHO05D007062 3.2e-13 78.2 73 58.9
Rhsim12G0202300 Rhododendron simsii HOM05D005732 ORTHO05D007062 3.2e-13 78.2 70 58.6
MBI04_g40322_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 4.2e-13 77.8 70 58.6
MBI04_g44953_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 4.2e-13 77.8 70 58.6
TAR626G0582 Trochodendron aralioides HOM05D005732 ORTHO05D007062 4.2e-13 77.8 70 55.7
Actinidia09002 Actinidia chinensis HOM05D005732 ORTHO05D007062 5.5e-13 77.4 71 56.3
AUR62022181 Chenopodium quinoa HOM05D005732 ORTHO05D007062 5.5e-13 77.4 70 58.6
Cc04_g02710 Coffea canephora HOM05D005732 ORTHO05D007062 5.5e-13 77.4 70 58.6
MD09G1205900 Malus domestica HOM05D005732 ORTHO05D007062 5.5e-13 77.4 70 58.6
Nn2g11615 Nelumbo nucifera HOM05D005732 ORTHO05D007062 5.5e-13 77.4 70 58.6
CANSAT56G1056 Cannabis sativa HOM05D005732 ORTHO05D007062 7.2e-13 77.0 78 52.6
Lj9C524T15 Lonicera japonica HOM05D005732 ORTHO05D007062 9.4e-13 76.6 72 54.2
Phvul.010G146500 Phaseolus vulgaris HOM05D005732 ORTHO05D007062 9.4e-13 76.6 70 57.1
Potri.003G050400 Populus trichocarpa HOM05D005732 ORTHO05D007062 9.4e-13 76.6 70 57.1
VMungo0331G0354 Vigna mungo HOM05D005732 ORTHO05D007062 9.4e-13 76.6 70 57.1
arahy.Tifrunner.gnm1.ann1.U1FWF5 Arachis hypogaea HOM05D005732 ORTHO05D007062 1.2e-12 76.3 70 58.6
arahy.Tifrunner.gnm1.ann1.Z2G3LM Arachis hypogaea HOM05D005732 ORTHO05D007062 1.2e-12 76.3 70 58.6
CARHR091510 Cardamine hirsuta HOM05D005732 ORTHO05D007062 1.2e-12 76.3 70 52.9
AUR62031884 Chenopodium quinoa HOM05D005732 ORTHO05D007062 1.2e-12 76.3 70 58.6
Duzib192G0605 Durio zibethinus HOM05D005732 ORTHO05D007062 1.2e-12 76.3 63 61.9
Gohir.A02G118700 Gossypium hirsutum HOM05D005732 ORTHO05D007062 1.2e-12 76.3 76 55.3
Lj9A511T51 Lonicera japonica HOM05D005732 ORTHO05D007062 1.2e-12 76.3 71 54.9
Sabra01G0152800 Salix brachista HOM05D005732 ORTHO05D007062 1.6e-12 75.9 75 57.3
CiPaw.02G147000 Carya illinoinensis HOM05D005732 ORTHO05D007062 2.1e-12 75.5 78 55.1
Lj5A55G45 Lonicera japonica HOM05D005732 ORTHO05D007062 2.1e-12 75.5 70 55.7
Manes.04G132400 Manihot esculenta HOM05D005732 ORTHO05D007062 2.1e-12 75.5 70 55.7
TWI18G0404 Tripterygium wilfordii HOM05D005732 ORTHO05D007062 2.1e-12 75.5 70 54.3
ATR0705G087 Amborella trichopoda HOM05D005732 ORTHO05D007062 3.6e-12 74.7 63 60.3
COL.COLO4_30485 Corchorus olitorius HOM05D000181 ORTHO05D008575 3.6e-12 74.7 67 53.7
Eucgr.F03064 Eucalyptus grandis HOM05D005732 ORTHO05D007062 3.6e-12 74.7 75 56.0
Gohir.D03G059300 Gossypium hirsutum HOM05D005732 ORTHO05D007062 3.6e-12 74.7 76 53.9
Gorai.003G063300 Gossypium raimondii HOM05D005732 ORTHO05D007062 3.6e-12 74.7 76 53.9
Aqoxy7G01470 Aquilegia oxysepala HOM05D005732 ORTHO05D007062 4.7e-12 74.3 70 55.7
CSS0006657 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 4.7e-12 74.3 70 57.1
DCAR_026348 Daucus carota HOM05D005732 ORTHO05D007062 4.7e-12 74.3 72 56.9
Hma1.2p1_1689F.1_g297591 Hydrangea macrophylla HOM05D005732 ORTHO05D007062 4.7e-12 74.3 75 56.0
Os01g0725400 Oryza sativa ssp. japonica HOM05D005732 ORTHO05D007062 4.7e-12 74.3 70 58.6
Sabra03G0028400 Salix brachista HOM05D005732 ORTHO05D007062 4.7e-12 74.3 70 57.1
MSTRG.22648 Avicennia marina HOM05D005732 ORTHO05D007062 8.0e-12 73.6 70 60.0
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 8.0e-12 73.6 70 57.1
Migut.I00910 Erythranthe guttata HOM05D005732 ORTHO05D007062 1.0e-11 73.2 70 57.1
MSTRG.11037 Avicennia marina HOM05D005732 ORTHO05D007062 1.4e-11 72.8 70 57.1
vmacro16985 Vaccinium macrocarpon HOM05D005732 ORTHO05D007062 1.4e-11 72.8 75 53.3
HanXRQChr09g0275891 Helianthus annuus HOM05D005732 ORTHO05D007062 1.8e-11 72.4 73 54.8
MELO3C024451.2 Cucumis melo HOM05D005732 ORTHO05D007062 2.3e-11 72.0 64 56.2
Prupe.3G065500 Prunus persica HOM05D005732 ORTHO05D007062 2.3e-11 72.0 73 56.2
unitig_46.g18459 Utricularia gibba HOM05D005732 ORTHO05D007062 2.3e-11 72.0 70 55.7
Oeu050609.1 Olea europaea HOM05D005732 ORTHO05D007062 3.0e-11 71.6 75 53.3
ECA232G1272 Erigeron canadensis HOM05D000181 ORTHO05D008575 4.0e-11 71.2 73 53.4
HanXRQChr16g0501231 Helianthus annuus HOM05D005732 ORTHO05D007062 5.2e-11 70.9 73 54.8
TPR.G35018 Trifolium pratense HOM05D005732 ORTHO05D007062 5.2e-11 70.9 70 52.9
TAR383G0371 Trochodendron aralioides HOM05D005732 ORTHO05D007062 5.2e-11 70.9 70 52.9
CsaV3_7G035420 Cucumis sativus L. HOM05D005732 ORTHO05D007062 6.7e-11 70.5 64 54.7
SalBow1G6954 Salvia bowleyana HOM05D005732 ORTHO05D007062 6.7e-11 70.5 70 54.3
SalBow2G2342 Salvia bowleyana HOM05D005732 ORTHO05D007062 6.7e-11 70.5 70 54.3
DCAR_016197 Daucus carota HOM05D005732 ORTHO05D007062 1.1e-10 69.7 70 50.0
Lsat_1_v5_gn_4_99921 Lactuca sativa HOM05D005732 ORTHO05D007062 1.1e-10 69.7 75 54.7
Hund06653 Selenicereus undatus HOM05D005732 ORTHO05D007062 1.5e-10 69.3 75 53.3
Lsat_1_v5_gn_1_34600 Lactuca sativa HOM05D005732 ORTHO05D007062 2.0e-10 68.9 76 50.0
ClCG09G000040 Citrullus lanatus HOM05D005732 ORTHO05D007062 2.6e-10 68.6 60 53.3
MBI19_g26309_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 2.6e-10 68.6 71 54.9
ECA247G0174 Erigeron canadensis HOM05D005732 ORTHO05D007062 3.3e-10 68.2 75 49.3
Manes.11G035100 Manihot esculenta HOM05D005732 ORTHO05D007062 3.3e-10 68.2 70 52.9
Sed0001710 Sechium edule HOM05D005732 ORTHO05D007062 4.4e-10 67.8 64 53.1
HanXRQChr02g0032191 Helianthus annuus HOM05D005732 ORTHO05D007062 7.5e-10 67.0 75 50.7
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 4.8e-09 64.3 52 61.5
Solyc03g120870.3 Solanum lycopersicum HOM05D005732 ORTHO05D007062 8.2e-09 63.5 71 49.3
Sopen03g039690 Solanum pennellii HOM05D005732 ORTHO05D007062 8.2e-09 63.5 71 49.3
PGSC0003DMG400002535 Solanum tuberosum HOM05D005732 ORTHO05D007062 2.7e-07 58.5 71 45.1
Peaxi162Scf00038g00842 Petunia axillaris HOM05D005732 ORTHO05D007062 7.7e-07 57.0 70 44.3


User provided reference genes

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