Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR073550 Cardamine hirsuta HOM05D005650 ORTHO05D007020 4.7e-280 967.2 498 100.0
AL2G40470 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 4.5e-254 880.9 498 90.8
AT1G80910 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 1.7e-253 879.0 498 90.0
Carub.0002s2663 Capsella rubella HOM05D005650 ORTHO05D007020 3.5e-251 871.3 498 90.0
Thhalv10018445m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 1.3e-245 852.8 498 87.1
Sp5g34830 Schrenkiella parvula HOM05D005650 ORTHO05D007020 1.3e-245 852.8 498 87.3
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 5.5e-244 847.4 498 85.7
C06p29600 Brassica napus HOM05D005650 ORTHO05D007020 1.0e-242 843.2 498 85.9
BcaC08g45346 Brassica carinata HOM05D005650 ORTHO05D007020 3.0e-242 841.6 498 85.7
BraA07t30337Z Brassica rapa HOM05D005650 ORTHO05D007020 2.5e-241 838.6 517 83.2
BolC6t38125H Brassica oleracea HOM05D005650 ORTHO05D007020 9.0e-239 830.1 518 82.6
A07p26920 Brassica napus HOM05D005650 ORTHO05D007020 4.5e-238 827.8 488 86.1
Aa31LG4G1220 Aethionema arabicum HOM05D005650 ORTHO05D007020 7.0e-223 777.3 504 80.8
Thhalv10007433m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 1.2e-219 766.5 504 78.8
AT1G16020 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 8.0e-219 763.8 517 77.2
CARHR016520 Cardamine hirsuta HOM05D005650 ORTHO05D007020 1.3e-216 756.5 504 77.6
AL1G28180 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 1.7e-216 756.1 517 76.4
Aa31LG7G600 Aethionema arabicum HOM05D005650 ORTHO05D007020 8.2e-216 753.8 508 76.6
Carub.0001s1582 Capsella rubella HOM05D005650 ORTHO05D007020 1.3e-213 746.5 504 76.4
Sp1g14330 Schrenkiella parvula HOM05D005650 ORTHO05D007020 9.1e-207 723.8 518 73.9
BraA09t41479Z Brassica rapa HOM05D005650 ORTHO05D007020 3.8e-205 718.4 519 73.8
THA.LOC104814015 Tarenaya hassleriana HOM05D005650 ORTHO05D007020 8.5e-205 717.2 530 71.5
C08p44650 Brassica napus HOM05D005650 ORTHO05D007020 1.1e-204 716.8 519 74.0
A09p61060 Brassica napus HOM05D005650 ORTHO05D007020 3.2e-204 715.3 519 73.6
BolC8t52011H Brassica oleracea HOM05D005650 ORTHO05D007020 4.2e-204 714.9 519 74.2
Ciclev10014948m.g Citrus clementina HOM05D005650 ORTHO05D007020 6.3e-200 701.0 516 70.0
Cfa015047 Carpinus fangiana HOM05D005650 ORTHO05D007020 3.5e-198 695.3 516 70.3
Thecc.02G307700 Theobroma cacao HOM05D005650 ORTHO05D007020 1.7e-197 693.0 529 67.7
BcaB03g14509 Brassica carinata HOM05D005650 ORTHO05D007020 2.3e-197 692.6 505 72.7
Duzib248G0273 Durio zibethinus HOM05D005650 ORTHO05D007020 2.3e-197 692.6 516 68.2
QL03p037983 Quercus lobata HOM05D005650 ORTHO05D007020 6.6e-197 691.0 515 68.9
Atru.chr11.825 Acer truncatum HOM05D005650 ORTHO05D007020 7.2e-196 687.6 529 67.5
Haze_10848 Corylus avellana HOM05D005650 ORTHO05D007020 1.2e-195 686.8 529 68.4
Gohir.A03G112000 Gossypium hirsutum HOM05D005650 ORTHO05D007020 3.6e-195 685.3 516 67.6
Gohir.D02G136500 Gossypium hirsutum HOM05D005650 ORTHO05D007020 6.1e-195 684.5 529 67.1
Gorai.005G152600 Gossypium raimondii HOM05D005650 ORTHO05D007020 6.1e-195 684.5 529 67.1
Manes.15G123300 Manihot esculenta HOM05D005650 ORTHO05D007020 8.0e-195 684.1 516 68.6
GSVIVG01011626001 Vitis vinifera HOM05D005650 ORTHO05D007020 8.0e-195 684.1 530 67.7
Duzib251G0272 Durio zibethinus HOM05D005650 ORTHO05D007020 5.2e-194 681.4 530 66.4
TAR622G0850 Trochodendron aralioides HOM05D005650 ORTHO05D007020 5.2e-194 681.4 516 68.2
Potri.008G137000 Populus trichocarpa HOM05D005650 ORTHO05D007020 2.0e-193 679.5 514 68.5
MD13G1018100 Malus domestica HOM05D005650 ORTHO05D007020 5.7e-193 677.9 515 68.3
Aqoxy2G00265 Aquilegia oxysepala HOM05D005650 ORTHO05D007020 9.8e-193 677.2 514 67.7
Dinv26372 Davidia involucrata HOM05D005650 ORTHO05D007020 3.7e-192 675.2 516 66.1
Lj4g0026003 Lotus japonicus HOM05D005650 ORTHO05D007020 3.7e-192 675.2 516 66.9
Prupe.7G053000 Prunus persica HOM05D005650 ORTHO05D007020 8.3e-192 674.1 517 68.3
CSS0031782 Camellia sinensis var. sinensis HOM05D005650 ORTHO05D007020 1.4e-191 673.3 514 67.1
MD16G1016000 Malus domestica HOM05D005650 ORTHO05D007020 2.0e-190 669.5 518 67.6
RcHm_v2.0_Chr4g0442431 Rosa chinensis HOM05D005650 ORTHO05D007020 3.5e-190 668.7 521 66.6
Glyma.05G240900 Glycine max HOM05D005650 ORTHO05D007020 7.8e-190 667.5 514 66.5
FvH4_4g33280 Fragaria vesca HOM05D005650 ORTHO05D007020 1.3e-189 666.8 513 67.1
Hma1.2p1_0192F.1_g083470 Hydrangea macrophylla HOM05D005650 ORTHO05D007020 3.9e-189 665.2 512 66.2
Phvul.011G008500 Phaseolus vulgaris HOM05D005650 ORTHO05D007020 5.0e-189 664.8 504 67.7
CiPaw.06G055300 Carya illinoinensis HOM05D005650 ORTHO05D007020 1.1e-188 663.7 516 66.1
Actinidia12402 Actinidia chinensis HOM05D005650 ORTHO05D007020 1.5e-188 663.3 523 65.6
Eucgr.B02693 Eucalyptus grandis HOM05D005650 ORTHO05D007020 1.5e-188 663.3 526 64.6
Psat4g004560 Pisum sativum HOM05D005650 ORTHO05D007020 1.9e-188 662.9 516 66.7
Nn8g41275 Nelumbo nucifera HOM05D005650 ORTHO05D007020 3.3e-188 662.1 517 66.0
Sc14g0006580 Simmondsia chinensis HOM05D005650 ORTHO05D007020 1.6e-187 659.8 516 66.3
PSO063G5777 Papaver somniferum HOM05D005650 ORTHO05D007020 2.8e-187 659.1 516 65.7
CANSAT78G2020 Cannabis sativa HOM05D005650 ORTHO05D007020 3.6e-187 658.7 530 66.4
PSO782G4204 Papaver somniferum HOM05D005650 ORTHO05D007020 6.2e-187 657.9 516 65.5
Cc11_g06590 Coffea canephora HOM05D005650 ORTHO05D007020 8.0e-187 657.5 531 65.3
arahy.Tifrunner.gnm1.ann1.L5UDEC Arachis hypogaea HOM05D005650 ORTHO05D007020 6.8e-186 654.4 529 64.1
ECA234G4226 Erigeron canadensis HOM05D005650 ORTHO05D007020 8.9e-186 654.1 515 66.0
AUR62036082 Chenopodium quinoa HOM05D005650 ORTHO05D007020 2.0e-185 652.9 511 64.8
Medtr8g105900 Medicago truncatula HOM05D005650 ORTHO05D007020 2.0e-185 652.9 529 65.0
HanXRQChr17g0565991 Helianthus annuus HOM05D005650 ORTHO05D007020 2.6e-185 652.5 508 66.1
Sed0001111 Sechium edule HOM05D005650 ORTHO05D007020 3.4e-185 652.1 509 65.6
Sabra08G0104500 Salix brachista HOM05D005650 ORTHO05D007020 7.5e-185 651.0 566 61.7
AUR62035393 Chenopodium quinoa HOM05D005650 ORTHO05D007020 9.8e-185 650.6 511 65.4
TWI74G1652 Tripterygium wilfordii HOM05D005650 ORTHO05D007020 1.7e-184 649.8 531 64.2
VMungo1127G0110 Vigna mungo HOM05D005650 ORTHO05D007020 8.3e-184 647.5 502 67.1
CsaV3_5G014540 Cucumis sativus L. HOM05D005650 ORTHO05D007020 1.4e-183 646.7 511 65.4
Glyma.08G047900 Glycine max HOM05D005650 ORTHO05D007020 1.4e-183 646.7 527 64.9
DCAR_023564 Daucus carota HOM05D005650 ORTHO05D007020 2.4e-183 646.0 517 63.8
MSTRG.23341 Avicennia marina HOM05D005650 ORTHO05D007020 4.1e-183 645.2 516 64.7
Nitab4.5_0002337g0070 Nicotiana tabacum HOM05D005650 ORTHO05D007020 5.4e-183 644.8 526 63.9
Hund07852 Selenicereus undatus HOM05D005650 ORTHO05D007020 5.4e-183 644.8 517 64.2
Lsat_1_v5_gn_4_23420 Lactuca sativa HOM05D005650 ORTHO05D007020 9.2e-183 644.0 521 63.7
Solyc02g062110.4 Solanum lycopersicum HOM05D005650 ORTHO05D007020 1.2e-182 643.7 513 64.9
Sopen02g013060 Solanum pennellii HOM05D005650 ORTHO05D007020 1.2e-182 643.7 513 64.9
VMungo0251G0664 Vigna mungo HOM05D005650 ORTHO05D007020 2.7e-182 642.5 499 66.9
arahy.Tifrunner.gnm1.ann1.NIUA4E Arachis hypogaea HOM05D005650 ORTHO05D007020 3.5e-182 642.1 559 60.5
CAN.G1206.2 Capsicum annuum HOM05D005650 ORTHO05D007020 4.6e-182 641.7 513 64.5
SGA_v2.0_scaffold111G31522 Striga asiatica HOM05D005650 ORTHO05D007020 2.5e-180 636.0 535 62.4
Rhsim09G0087900 Rhododendron simsii HOM05D005650 ORTHO05D007020 4.0e-178 628.6 507 65.5
Cpa.g.sc362.1 Carica papaya HOM05D005650 ORTHO05D007020 4.4e-177 625.2 463 68.7
Lalb_Chr14g0362121 Lupinus albus HOM05D005650 ORTHO05D007020 5.4e-175 618.2 507 62.3
TPR.G19250 Trifolium pratense HOM05D005650 ORTHO05D007020 4.7e-171 605.1 503 63.0
SalBow3G3602 Salvia bowleyana HOM05D005650 ORTHO05D007020 3.1e-170 602.4 540 60.4
Dinv01894 Davidia involucrata HOM05D005650 ORTHO05D007020 1.9e-167 593.2 489 65.0
FAN17G2396 Fragaria x ananassa HOM05D005650 ORTHO05D007020 9.2e-167 590.9 502 62.2
unitig_21.g20969 Utricularia gibba HOM05D005650 ORTHO05D007020 9.2e-167 590.9 525 59.0
FAN07G2273 Fragaria x ananassa HOM05D005650 ORTHO05D007020 1.2e-166 590.5 505 62.4
ATR0021G018 Amborella trichopoda HOM05D005650 ORTHO05D007020 1.3e-165 587.0 510 61.6
Os08g0427300 Oryza sativa ssp. japonica HOM05D005650 ORTHO05D007020 2.0e-161 573.2 510 58.6
Lj6C735G0 Lonicera japonica HOM05D005650 ORTHO05D007020 9.9e-161 570.9 548 56.9
Nitab4.5_0000188g0130 Nicotiana tabacum HOM05D005650 ORTHO05D007020 8.4e-160 567.8 518 59.1
Ah.01g015510 Amaranthus hybridus HOM05D005650 ORTHO05D007020 2.4e-159 566.2 526 58.0
Zm00001eb179310 Zea mays HOM05D005650 ORTHO05D007020 4.2e-159 565.5 509 58.5
CiPaw.05G158000 Carya illinoinensis HOM05D005650 ORTHO05D007020 7.1e-159 564.7 431 67.1
SEGI_01999 Sequoiadendron giganteum HOM05D005650 ORTHO05D007020 3.8e-152 542.3 521 55.1
PGR004G1106 Punica granatum HOM05D005650 ORTHO05D007020 1.1e-151 540.8 438 63.7
MELO3C026414.2 Cucumis melo HOM05D005650 ORTHO05D007020 2.1e-147 526.6 438 62.8
SHI04292 Sapria himalayana HOM05D005650 ORTHO05D007020 1.1e-146 524.2 491 56.6
Peaxi162Scf00439g00528 Petunia axillaris HOM05D005650 ORTHO05D007020 5.3e-146 521.9 513 55.9
CDE05G1068 Ceratophyllum demersum HOM05D005650 ORTHO05D007020 1.3e-144 517.3 463 60.0
Migut.H02363 Erythranthe guttata HOM05D005650 ORTHO05D007020 2.9e-144 516.2 516 55.2
Sed0000862 Sechium edule HOM05D005650 ORTHO05D007020 4.2e-127 459.1 446 57.0
COL.COLO4_27613 Corchorus olitorius HOM05D005650 ORTHO05D007020 3.4e-121 439.5 356 65.4
Mapoly0059s0063 Marchantia polymorpha HOM05D005650 ORTHO05D007020 2.5e-119 433.3 528 46.6
HPP92_009689 Vanilla planifolia HOM05D005650 ORTHO05D007020 5.5e-119 432.2 396 59.1
Pp3c16_7940 Physcomitrium patens HOM05D005650 ORTHO05D007020 3.9e-117 426.0 518 46.7
SMO146G0258 Selaginella moellendorffii HOM05D005650 ORTHO05D007020 9.1e-114 414.8 497 45.3
EL10Ac9g20842 Beta vulgaris HOM05D005650 ORTHO05D007020 3.0e-109 399.8 386 56.2
AagrBONN_evm.TU.Sc2ySwM_117.2271 Anthoceros agrestis HOM05D005650 ORTHO05D007020 5.3e-98 362.5 472 44.3
Oeu059514.1 Olea europaea HOM05D005650 ORTHO05D007020 1.6e-86 324.3 471 44.2
Dinv00920 Davidia involucrata HOM05D005650 ORTHO05D007020 9.2e-50 202.2 139 73.4
C06p32880 Brassica napus HOM05D005650 ORTHO05D007020 2.1e-46 191.0 137 74.5
Oeu036123.1 Olea europaea HOM05D005650 ORTHO05D007020 1.3e-43 181.8 123 69.1
DCAR_023531 Daucus carota HOM05D005650 ORTHO05D007020 2.4e-42 177.6 440 35.7
C05p23900 Brassica napus HOM05D005650 ORTHO05D007020 4.2e-34 150.2 284 37.7
C06p32890 Brassica napus HOM05D005650 ORTHO05D007020 2.1e-30 137.9 99 73.7
Lsat_1_v5_gn_7_69840 Lactuca sativa HOM05D005650 ORTHO05D007020 6.2e-22 109.8 71 71.8
Lsat_1_v5_gn_2_121941 Lactuca sativa HOM05D005650 ORTHO05D007020 1.4e-21 108.6 77 66.2
CiPaw.05G157900 Carya illinoinensis HOM05D005650 ORTHO05D007020 1.8e-21 108.2 80 65.0
CBR_g31091 Chara braunii HOM05D000019 ORTHO05D000048 4.0e-21 107.1 143 38.5
Lsat_1_v5_gn_1_123601 Lactuca sativa HOM05D005650 ORTHO05D007020 3.2e-18 97.4 99 51.5
BolC6t38409H Brassica oleracea HOM05D005650 ORTHO05D007020 4.6e-17 93.6 115 53.9
MELO3C019077.2 Cucumis melo HOM05D005650 ORTHO05D007020 3.9e-16 90.5 72 63.9
Cre07.g327000 Chlamydomonas reinhardtii HOM05D005650 ORTHO05D007020 7.4e-15 86.3 237 28.7
C06p53600 Brassica napus HOM05D005650 ORTHO05D040396 4.6e-09 67.0 40 82.5
CBR_g31097 Chara braunii HOM05D000019 ORTHO05D000048 4.6e-09 67.0 53 50.9


User provided reference genes

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