Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR072720 Cardamine hirsuta HOM05D004382 ORTHO05D005181 1.3e-70 269.6 141 100.0
AT1G79040 Arabidopsis thaliana HOM05D004382 ORTHO05D005181 1.2e-68 263.1 141 96.5
Carub.0002s2591 Capsella rubella HOM05D004382 ORTHO05D005181 1.6e-68 262.7 141 96.5
BcaB02g08662 Brassica carinata HOM05D004382 ORTHO05D005181 1.5e-66 256.1 141 93.6
BcaC08g47468 Brassica carinata HOM05D004382 ORTHO05D005181 3.4e-66 255.0 141 92.9
C06p52920 Brassica napus HOM05D004382 ORTHO05D005181 3.4e-66 255.0 141 92.9
BolC6t40310H Brassica oleracea HOM05D004382 ORTHO05D005181 3.4e-66 255.0 141 92.9
A07p44190 Brassica napus HOM05D004382 ORTHO05D005181 4.4e-66 254.6 141 92.9
BraA07t31927Z Brassica rapa HOM05D004382 ORTHO05D005181 4.4e-66 254.6 141 92.9
A07p27340 Brassica napus HOM05D004382 ORTHO05D005181 1.7e-65 252.7 142 93.7
BraA07t30375Z Brassica rapa HOM05D004382 ORTHO05D005181 1.7e-65 252.7 142 93.7
BcaB02g07194 Brassica carinata HOM05D004382 ORTHO05D005181 2.2e-65 252.3 142 93.7
BcaB05g25168 Brassica carinata HOM05D004382 ORTHO05D005181 2.2e-65 252.3 142 93.7
BcaC08g45389 Brassica carinata HOM05D004382 ORTHO05D005181 4.9e-65 251.1 142 93.7
C06p30200 Brassica napus HOM05D004382 ORTHO05D005181 3.2e-64 248.4 142 93.0
BolC6t38183H Brassica oleracea HOM05D004382 ORTHO05D005181 3.2e-64 248.4 142 93.0
AL2G39500 Arabidopsis lyrata HOM05D004382 ORTHO05D005181 4.2e-64 248.1 133 95.5
BcaC03g15860 Brassica carinata HOM05D004382 ORTHO05D005181 4.2e-64 248.1 141 92.2
A02p22470 Brassica napus HOM05D004382 ORTHO05D005181 4.2e-64 248.1 141 92.2
C02p36150 Brassica napus HOM05D004382 ORTHO05D005181 4.2e-64 248.1 141 92.2
BolC2t09629H Brassica oleracea HOM05D004382 ORTHO05D005181 4.2e-64 248.1 141 92.2
BraA02t07252Z Brassica rapa HOM05D004382 ORTHO05D005181 4.2e-64 248.1 141 92.2
Thhalv10019302m.g Eutrema salsugineum HOM05D004382 ORTHO05D005181 1.6e-63 246.1 142 90.8
Sp5g34090 Schrenkiella parvula HOM05D004382 ORTHO05D005181 1.6e-63 246.1 142 90.1
Aa31LG4G1950 Aethionema arabicum HOM05D004382 ORTHO05D005181 1.5e-61 239.6 142 88.0
Gohir.A04G050200 Gossypium hirsutum HOM05D004382 ORTHO05D005181 5.4e-56 221.1 141 82.3
Gohir.D05G330700 Gossypium hirsutum HOM05D004382 ORTHO05D005181 5.4e-56 221.1 141 83.0
Gorai.009G354500 Gossypium raimondii HOM05D004382 ORTHO05D005181 5.4e-56 221.1 141 83.0
CANSAT56G1367 Cannabis sativa HOM05D004382 ORTHO05D005181 1.2e-55 219.9 141 83.0
TWI38G0625 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 7.9e-55 217.2 142 77.5
VMungo1080G1647 Vigna mungo HOM05D004382 ORTHO05D005181 1.8e-54 216.1 141 80.1
Solyc07g066310.3 Solanum lycopersicum HOM05D004382 ORTHO05D005181 2.3e-54 215.7 141 82.3
Sopen07g034490 Solanum pennellii HOM05D004382 ORTHO05D005181 2.3e-54 215.7 141 82.3
arahy.Tifrunner.gnm1.ann1.9QX17Y Arachis hypogaea HOM05D004382 ORTHO05D005181 3.0e-54 215.3 141 78.0
Glyma.08G173700 Glycine max HOM05D004382 ORTHO05D005181 3.0e-54 215.3 141 80.1
MD05G1215200 Malus domestica HOM05D004382 ORTHO05D005181 3.0e-54 215.3 141 78.0
Nitab4.5_0002475g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 3.0e-54 215.3 141 79.4
Phvul.005G055200 Phaseolus vulgaris HOM05D004382 ORTHO05D005181 3.0e-54 215.3 141 80.1
PGSC0003DMG400022241 Solanum tuberosum HOM05D004382 ORTHO05D005181 3.0e-54 215.3 141 81.6
arahy.Tifrunner.gnm1.ann1.HCTL36 Arachis hypogaea HOM05D004382 ORTHO05D005181 8.7e-54 213.8 141 78.0
Nitab4.5_0000313g0040 Nicotiana tabacum HOM05D004382 ORTHO05D005181 4.3e-53 211.5 141 78.0
Ciclev10022793m.g Citrus clementina HOM05D004382 ORTHO05D005181 5.6e-53 211.1 141 79.4
Lalb_Chr01g0015971 Lupinus albus HOM05D004382 ORTHO05D005181 5.6e-53 211.1 136 81.6
TWI38G0568 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 5.6e-53 211.1 142 76.1
Glyma.15G253700 Glycine max HOM05D004382 ORTHO05D005181 9.6e-53 210.3 141 79.4
Sabra11G0127600 Salix brachista HOM05D004382 ORTHO05D005181 1.6e-52 209.5 141 78.7
AUR62004366 Chenopodium quinoa HOM05D004382 ORTHO05D005181 2.8e-52 208.8 142 78.2
Sed0014118 Sechium edule HOM05D004382 ORTHO05D005181 3.6e-52 208.4 141 79.4
CsaV3_4G007600 Cucumis sativus L. HOM05D004382 ORTHO05D005181 4.8e-52 208.0 141 78.7
ClCG07G010700 Citrullus lanatus HOM05D004382 ORTHO05D005181 6.2e-52 207.6 141 78.7
CSS0001445 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 1.1e-51 206.8 141 78.0
Lj3g0019499 Lotus japonicus HOM05D004382 ORTHO05D005181 1.4e-51 206.5 141 75.9
Peaxi162Scf00232g01129 Petunia axillaris HOM05D004382 ORTHO05D005181 1.4e-51 206.5 141 76.6
Sed0025739 Sechium edule HOM05D004382 ORTHO05D005181 1.4e-51 206.5 141 78.0
Oeu002809.1 Olea europaea HOM05D004382 ORTHO05D005181 1.8e-51 206.1 141 77.3
MSTRG.7052 Avicennia marina HOM05D004382 ORTHO05D005181 3.1e-51 205.3 141 73.0
COL.COLO4_05073 Corchorus olitorius HOM05D004382 ORTHO05D005181 3.1e-51 205.3 142 77.5
AUR62022575 Chenopodium quinoa HOM05D004382 ORTHO05D005181 4.0e-51 204.9 142 76.1
MD10G1198300 Malus domestica HOM05D004382 ORTHO05D005181 4.0e-51 204.9 141 74.5
Nitab4.5_0000134g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 4.0e-51 204.9 142 76.1
CAN.G943.25 Capsicum annuum HOM05D004382 ORTHO05D005181 6.9e-51 204.1 141 80.1
SGA_v2.0_scaffold49G18168 Striga asiatica HOM05D004382 ORTHO05D005181 6.9e-51 204.1 141 75.9
CiPaw.11G067100 Carya illinoinensis HOM05D004382 ORTHO05D005181 1.5e-50 203.0 141 74.5
FvH4_3g16050 Fragaria vesca HOM05D004382 ORTHO05D005181 1.5e-50 203.0 141 75.9
FAN11G1612 Fragaria x ananassa HOM05D004382 ORTHO05D005181 1.5e-50 203.0 141 75.9
Cc05_g15930 Coffea canephora HOM05D004382 ORTHO05D005181 2.6e-50 202.2 141 75.9
PGR142G2616 Punica granatum HOM05D004382 ORTHO05D005181 2.6e-50 202.2 141 75.9
Actinidia37109 Actinidia chinensis HOM05D004382 ORTHO05D005181 3.4e-50 201.8 143 75.5
Prupe.4G143700 Prunus persica HOM05D004382 ORTHO05D005181 3.4e-50 201.8 141 75.2
Lalb_Chr25g0285191 Lupinus albus HOM05D004382 ORTHO05D005181 4.5e-50 201.4 142 74.6
unitig_8.g4771 Utricularia gibba HOM05D004382 ORTHO05D005181 4.5e-50 201.4 141 73.0
GSVIVG01020484001 Vitis vinifera HOM05D004382 ORTHO05D005181 4.5e-50 201.4 141 74.5
Hma1.2p1_0193F.1_g084500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 7.6e-50 200.7 141 73.8
Potri.001G438700 Populus trichocarpa HOM05D004382 ORTHO05D005181 9.9e-50 200.3 141 76.6
Potri.001G438800 Populus trichocarpa HOM05D004382 ORTHO05D005181 9.9e-50 200.3 140 75.7
ClCG11G016280 Citrullus lanatus HOM05D004382 ORTHO05D005181 1.7e-49 199.5 141 72.3
FAN25G3309 Fragaria x ananassa HOM05D004382 ORTHO05D005181 2.9e-49 198.7 141 74.5
Peaxi162Scf00006g00149 Petunia axillaris HOM05D004382 ORTHO05D005181 2.9e-49 198.7 142 75.4
Potri.011G142200 Populus trichocarpa HOM05D004382 ORTHO05D005181 2.9e-49 198.7 141 76.6
Migut.H01700 Erythranthe guttata HOM05D004382 ORTHO05D005181 3.8e-49 198.4 141 72.3
Thecc.07G156900 Theobroma cacao HOM05D004382 ORTHO05D005181 1.4e-48 196.4 141 74.5
Ca_03704_v3 Cicer arietinum L. HOM05D004382 ORTHO05D005181 1.9e-48 196.1 141 72.3
Psat1g002320 Pisum sativum HOM05D004382 ORTHO05D005181 1.9e-48 196.1 141 73.0
SalBow8G0430 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.9e-48 196.1 141 73.8
FAN21G1818 Fragaria x ananassa HOM05D004382 ORTHO05D005181 3.2e-48 195.3 141 73.0
Oeu003841.1 Olea europaea HOM05D004382 ORTHO05D005181 3.2e-48 195.3 143 74.8
RcHm_v2.0_Chr5g0027021 Rosa chinensis HOM05D004382 ORTHO05D005181 3.2e-48 195.3 141 73.0
CSS0016237 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 4.2e-48 194.9 138 71.7
DCAR_013749 Daucus carota HOM05D004382 ORTHO05D005181 4.2e-48 194.9 142 75.4
Ah.08g216320 Amaranthus hybridus HOM05D004382 ORTHO05D005181 5.5e-48 194.5 141 73.8
QL04p074767 Quercus lobata HOM05D004382 ORTHO05D005181 5.5e-48 194.5 140 72.9
ECA236G0888 Erigeron canadensis HOM05D004382 ORTHO05D005181 7.1e-48 194.1 141 75.2
Medtr2g064650 Medicago truncatula HOM05D004382 ORTHO05D005181 1.2e-47 193.4 141 74.5
Nitab4.5_0001791g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 1.2e-47 193.4 143 74.8
TPR.G10344 Trifolium pratense HOM05D004382 ORTHO05D005181 1.6e-47 193.0 141 73.0
Gorai.002G032900 Gossypium raimondii HOM05D004382 ORTHO05D005181 2.7e-47 192.2 145 73.8
Potri.011G142300 Populus trichocarpa HOM05D004382 ORTHO05D005181 2.7e-47 192.2 139 74.8
Duzib187G1376 Durio zibethinus HOM05D004382 ORTHO05D005181 6.0e-47 191.0 141 73.0
Sc16g0003480 Simmondsia chinensis HOM05D004382 ORTHO05D005181 6.0e-47 191.0 141 70.9
MSTRG.14535 Avicennia marina HOM05D004382 ORTHO05D005181 7.9e-47 190.7 141 71.6
THA.LOC104812349 Tarenaya hassleriana HOM05D004382 ORTHO05D005181 1.3e-46 189.9 142 73.9
Lalb_Chr03g0031561 Lupinus albus HOM05D004382 ORTHO05D005181 1.8e-46 189.5 144 70.1
Atru.chr2.1854 Acer truncatum HOM05D004382 ORTHO05D005181 5.1e-46 188.0 141 73.0
EL10Ac4g08547 Beta vulgaris HOM05D004382 ORTHO05D005181 5.1e-46 188.0 142 72.5
Manes.15G102500 Manihot esculenta HOM05D004382 ORTHO05D005181 5.1e-46 188.0 143 73.4
HanXRQChr08g0232801 Helianthus annuus HOM05D004382 ORTHO05D005181 6.7e-46 187.6 141 72.3
Sed0016780 Sechium edule HOM05D004382 ORTHO05D005181 8.7e-46 187.2 138 72.5
SalBow5G1313 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.1e-45 186.8 141 72.3
SalBow5G2519 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.1e-45 186.8 141 72.3
ATR1098G153 Amborella trichopoda HOM05D004382 ORTHO05D005181 1.5e-45 186.4 142 69.0
HanXRQChr05g0160651 Helianthus annuus HOM05D004382 ORTHO05D005181 1.9e-45 186.0 141 71.6
Gohir.A01G037100 Gossypium hirsutum HOM05D004382 ORTHO05D005181 2.5e-45 185.7 144 70.1
Nn3g20146 Nelumbo nucifera HOM05D002089 ORTHO05D011346 3.3e-45 185.3 136 70.6
Eucgr.F01447 Eucalyptus grandis HOM05D004382 ORTHO05D005181 5.6e-45 184.5 157 68.8
MBI02_g25371_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 5.6e-45 184.5 142 73.2
Rhsim04G0006200 Rhododendron simsii HOM05D004382 ORTHO05D005181 5.6e-45 184.5 139 71.9
DCAR_016816 Daucus carota HOM05D004382 ORTHO05D005181 1.3e-44 183.3 139 70.5
Aqoxy1G01569 Aquilegia oxysepala HOM05D004382 ORTHO05D005181 1.6e-44 183.0 142 69.0
TAR627G0744 Trochodendron aralioides HOM05D004382 ORTHO05D005181 6.2e-44 181.0 135 71.9
vmacro09788 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 6.2e-44 181.0 143 70.6
Hma1.2p1_0321F.1_g124500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 1.4e-43 179.9 142 69.0
PSO541G3267 Papaver somniferum HOM05D004382 ORTHO05D005181 3.1e-43 178.7 143 68.5
PSO675G7775 Papaver somniferum HOM05D004382 ORTHO05D005181 3.1e-43 178.7 143 68.5
Hund10309 Selenicereus undatus HOM05D004382 ORTHO05D005181 1.5e-42 176.4 141 68.1
DCAR_009633 Daucus carota HOM05D004382 ORTHO05D005181 2.0e-42 176.0 142 69.0
Solyc12g017250.2 Solanum lycopersicum HOM05D004382 ORTHO05D005181 2.2e-41 172.6 143 65.7
Sopen12g008070 Solanum pennellii HOM05D004382 ORTHO05D005181 3.8e-41 171.8 143 66.4
CDE04G0985 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 6.5e-41 171.0 141 68.1
Manes.03G082900 Manihot esculenta HOM05D004382 ORTHO05D005181 1.1e-40 170.2 142 69.0
CDE12G0390 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 4.2e-40 168.3 141 66.7
HPP92_016563 Vanilla planifolia HOM05D004382 ORTHO05D005181 3.5e-39 165.2 141 63.8
Os08g0200300 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 2.3e-38 162.5 139 65.5
CDE11G0376 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 3.0e-38 162.2 141 63.8
Sabra16G0296700 Salix brachista HOM05D004382 ORTHO05D005181 3.0e-38 162.2 159 61.0
Lsat_1_v5_gn_7_116120 Lactuca sativa HOM05D004382 ORTHO05D005181 3.9e-38 161.8 142 64.1
Zm00001eb171230 Zea mays HOM05D004382 ORTHO05D005181 1.9e-37 159.5 115 72.2
Eucgr.F03186 Eucalyptus grandis HOM05D004382 ORTHO05D005181 4.3e-37 158.3 111 71.2
Sabra11G0127700 Salix brachista HOM05D004382 ORTHO05D005181 1.3e-36 156.8 140 63.6
Os07g0147550 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 5.3e-35 151.4 142 61.3
vmacro11652 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 1.5e-34 149.8 155 58.1
Rhsim06G0237200 Rhododendron simsii HOM05D006828 ORTHO05D008312 2.0e-34 149.4 91 82.4
Dinv19628 Davidia involucrata HOM05D006828 ORTHO05D008312 3.8e-33 145.2 88 80.7
Os07g0147500 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 1.9e-32 142.9 140 57.1
SEGI_14655 Sequoiadendron giganteum HOM05D004382 ORTHO05D005181 4.2e-32 141.7 119 58.0
Gohir.D01G024400 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.2e-31 140.2 114 67.5
Mapoly0001s0109 Marchantia polymorpha HOM05D004382 ORTHO05D005181 1.8e-30 136.3 145 55.2
MELO3C016181.2 Cucumis melo HOM05D004382 ORTHO05D005181 6.7e-30 134.4 91 80.2
SMO134G0197 Selaginella moellendorffii HOM05D004382 ORTHO05D005181 8.7e-30 134.0 119 58.0
PGSC0003DMG400002312 Solanum tuberosum HOM05D004382 ORTHO05D005181 3.3e-29 132.1 143 57.3
Mapoly0006s0055 Marchantia polymorpha HOM05D004382 ORTHO05D005181 1.3e-28 130.2 120 58.3
AagrBONN_evm.TU.Sc2ySwM_228.2640 Anthoceros agrestis HOM05D004382 ORTHO05D005181 2.8e-28 129.0 141 52.5
MBI18_g37150_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 2.8e-28 129.0 141 53.2
Pp3c27_2340 Physcomitrium patens HOM05D004382 ORTHO05D005181 6.3e-28 127.9 118 56.8
Cpa.g.c37194 Carica papaya HOM05D004382 ORTHO05D005181 3.1e-27 125.6 91 72.5
Pp3c16_5650 Physcomitrium patens HOM05D004382 ORTHO05D005181 3.1e-27 125.6 142 50.7
Pp3c5_4230 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.2e-26 123.6 142 52.1
Pp3c27_2320 Physcomitrium patens HOM05D004382 ORTHO05D005181 3.4e-26 122.1 139 53.2
PRCOL_00003342 Prasinoderma coloniale HOM05D004382 ORTHO05D005181 7.9e-23 110.9 88 58.0
PGR083G0343 Punica granatum HOM05D004382 ORTHO05D005181 5.1e-22 108.2 91 63.7
Haze_08525 Corylus avellana HOM05D004382 ORTHO05D005181 1.5e-18 96.7 141 45.4
Cpa.g.c38697 Carica papaya HOM05D004382 ORTHO05D005181 5.9e-18 94.7 53 83.0
CBR_g30109 Chara braunii HOM05D000004 ORTHO05D000002 5.9e-18 94.7 67 64.2
Cre06.g261000 Chlamydomonas reinhardtii HOM05D004382 ORTHO05D005181 3.8e-17 92.0 133 46.6
Atru.chr6.732 Acer truncatum HOM05D004382 ORTHO05D005181 1.6e-15 86.7 81 61.7
TAR626G0945 Trochodendron aralioides HOM05D004382 ORTHO05D005181 1.3e-12 77.0 87 58.6
TPR.G25891 Trifolium pratense HOM05D004382 ORTHO05D005181 9.4e-08 60.8 135 37.8


User provided reference genes

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