Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR070760 Cardamine hirsuta HOM05D000237 ORTHO05D006530 1.1e-92 343.6 168 100.0
AL2G37460 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 4.4e-62 241.9 169 73.4
AL1G34720 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 3.9e-50 202.2 224 52.7
Thhalv10006523m.g Eutrema salsugineum HOM05D000237 ORTHO05D006530 3.6e-48 195.7 224 51.3
A06p17660 Brassica napus HOM05D000237 ORTHO05D006530 1.4e-47 193.7 225 51.6
C05p20570 Brassica napus HOM05D000237 ORTHO05D006530 1.8e-47 193.4 225 51.6
BolC5t30755H Brassica oleracea HOM05D000237 ORTHO05D006530 1.8e-47 193.4 225 51.6
Carub.0001s2101 Capsella rubella HOM05D000237 ORTHO05D006530 1.8e-47 193.4 224 50.9
Sp1g19110 Schrenkiella parvula HOM05D000237 ORTHO05D006530 3.1e-47 192.6 224 50.0
CARHR021940 Cardamine hirsuta HOM05D000237 ORTHO05D006530 4.0e-47 192.2 224 50.4
BcaC05g26074 Brassica carinata HOM05D000237 ORTHO05D006530 1.5e-46 190.3 224 51.3
MD15G1133400 Malus domestica HOM05D000237 ORTHO05D006530 2.6e-46 189.5 221 49.3
C08p20910 Brassica napus HOM05D000237 ORTHO05D006530 7.6e-46 188.0 225 51.1
Aa31LG7G5550 Aethionema arabicum HOM05D000237 ORTHO05D006530 1.7e-45 186.8 267 44.6
BolC8t49729H Brassica oleracea HOM05D000237 ORTHO05D006530 1.7e-45 186.8 225 50.7
FvH4_2g27950 Fragaria vesca HOM05D000237 ORTHO05D006530 1.7e-45 186.8 220 48.6
FAN24G1388 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.7e-45 186.8 220 48.6
FAN27G0451 Fragaria x ananassa HOM05D000237 ORTHO05D006530 2.9e-45 186.0 221 48.4
Potri.002G077700 Populus trichocarpa HOM05D000237 ORTHO05D006530 2.9e-45 186.0 218 49.1
A08p28930 Brassica napus HOM05D000987 ORTHO05D006530 1.1e-44 184.1 225 49.3
BraA08t34823Z Brassica rapa HOM05D000237 ORTHO05D006530 1.1e-44 184.1 225 49.3
FAN20G2323 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.1e-44 184.1 221 48.0
Potri.005G182900 Populus trichocarpa HOM05D000237 ORTHO05D006530 1.1e-44 184.1 219 48.4
Gorai.009G249000 Gossypium raimondii HOM05D000237 ORTHO05D006530 1.9e-44 183.3 225 47.6
Prupe.1G489000 Prunus persica HOM05D000237 ORTHO05D006530 2.4e-44 183.0 215 49.3
Sabra02G0061100 Salix brachista HOM05D000237 ORTHO05D006530 2.4e-44 183.0 222 49.1
CiPaw.15G030900 Carya illinoinensis HOM05D000237 ORTHO05D006530 3.2e-44 182.6 223 48.0
Hma1.2p1_0880F.1_g231830 Hydrangea macrophylla HOM05D000237 ORTHO05D006530 7.1e-44 181.4 207 48.8
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 2.1e-43 179.9 221 47.1
RcHm_v2.0_Chr6g0296771 Rosa chinensis HOM05D000237 ORTHO05D006530 2.1e-43 179.9 220 47.3
GSVIVG01008802001 Vitis vinifera HOM05D000237 ORTHO05D006530 3.5e-43 179.1 215 47.9
QL09p032246 Quercus lobata HOM05D000237 ORTHO05D006530 1.3e-42 177.2 215 47.9
AT1G21580 Arabidopsis thaliana HOM05D000237 ORTHO05D006530 3.0e-42 176.0 134 67.2
DCAR_003591 Daucus carota HOM05D000237 ORTHO05D006530 3.0e-42 176.0 219 47.0
Gohir.A05G238100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 3.9e-42 175.6 220 46.8
Thecc.08G133600 Theobroma cacao HOM05D000237 ORTHO05D006530 3.9e-42 175.6 221 46.6
Gohir.D05G240100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 5.1e-42 175.3 219 47.0
HanXRQChr09g0256631 Helianthus annuus HOM05D000237 ORTHO05D006530 1.1e-41 174.1 219 47.0
Cpa.g.sc1156.4 Carica papaya HOM05D000237 ORTHO05D006530 1.9e-41 173.3 203 50.2
MBI03_g13492_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D006530 1.9e-41 173.3 230 45.2
SalBow7G1767 Salvia bowleyana HOM05D000237 ORTHO05D006530 3.3e-41 172.6 222 46.8
SalBow7G2018 Salvia bowleyana HOM05D000237 ORTHO05D006530 3.3e-41 172.6 222 46.8
TWI32G0010 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 3.3e-41 172.6 219 46.6
Duzib093G2205 Durio zibethinus HOM05D000237 ORTHO05D006530 4.3e-41 172.2 223 46.6
Lsat_1_v5_gn_4_135201 Lactuca sativa HOM05D000237 ORTHO05D006530 7.3e-41 171.4 180 52.2
Dinv27266 Davidia involucrata HOM05D000237 ORTHO05D006530 9.6e-41 171.0 225 45.8
Duzib041G0809 Durio zibethinus HOM05D000237 ORTHO05D006530 9.6e-41 171.0 221 46.2
COL.COLO4_07936 Corchorus olitorius HOM05D000237 ORTHO05D006530 1.3e-40 170.6 221 46.2
MELO3C012713.2 Cucumis melo HOM05D000237 ORTHO05D006530 1.3e-40 170.6 194 50.5
Lalb_Chr04g0253551 Lupinus albus HOM05D000237 ORTHO05D006530 1.3e-40 170.6 214 46.7
CSS0037931 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D006530 2.1e-40 169.9 227 45.4
CsaV3_7G022160 Cucumis sativus L. HOM05D000237 ORTHO05D006530 2.1e-40 169.9 194 50.5
Ca_12643_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 2.8e-40 169.5 209 48.3
Psat6g040880 Pisum sativum HOM05D000237 ORTHO05D006530 3.6e-40 169.1 209 47.8
COL.COLO4_07934 Corchorus olitorius HOM05D000237 ORTHO05D006530 4.8e-40 168.7 221 45.7
Dinv14699 Davidia involucrata HOM05D000237 ORTHO05D006530 8.1e-40 167.9 228 45.2
arahy.Tifrunner.gnm1.ann1.JKU5X8 Arachis hypogaea HOM05D000237 ORTHO05D006530 1.1e-39 167.5 209 48.3
Ciclev10000009m.g Citrus clementina HOM05D000237 ORTHO05D006530 1.1e-39 167.5 211 49.3
Medtr1g029710 Medicago truncatula HOM05D000237 ORTHO05D006530 1.1e-39 167.5 209 48.3
arahy.Tifrunner.gnm1.ann1.8V8SFL Arachis hypogaea HOM05D000237 ORTHO05D006530 1.4e-39 167.2 216 45.8
Glyma.14G155900 Glycine max HOM05D000237 ORTHO05D006530 1.4e-39 167.2 207 46.9
Actinidia21273 Actinidia chinensis HOM05D000237 ORTHO05D006530 1.8e-39 166.8 231 44.6
ECA232G3457 Erigeron canadensis HOM05D000237 ORTHO05D006530 1.8e-39 166.8 217 45.6
AUR62013435 Chenopodium quinoa HOM05D000237 ORTHO05D006530 2.4e-39 166.4 203 47.3
THA.LOC104812079 Tarenaya hassleriana HOM05D000237 ORTHO05D006530 2.4e-39 166.4 135 63.0
Glyma.13G034600 Glycine max HOM05D000237 ORTHO05D006530 4.0e-39 165.6 207 46.4
Rhsim06G0089600 Rhododendron simsii HOM05D000237 ORTHO05D006530 4.0e-39 165.6 232 44.0
EL10Ac1g01364 Beta vulgaris HOM05D000237 ORTHO05D006530 6.9e-39 164.9 228 43.9
Sc20g0002700 Simmondsia chinensis HOM05D000237 ORTHO05D006530 9.0e-39 164.5 216 45.4
TAR628G1620 Trochodendron aralioides HOM05D000237 ORTHO05D006530 1.2e-38 164.1 213 46.9
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 1.5e-38 163.7 125 65.6
TWI34G0547 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 1.5e-38 163.7 222 45.0
Solyc04g057990.4 Solanum lycopersicum HOM05D000237 ORTHO05D006530 2.0e-38 163.3 205 45.9
Atru.chr13.1586 Acer truncatum HOM05D000237 ORTHO05D006530 2.6e-38 162.9 200 49.5
Aqoxy6G00305 Aquilegia oxysepala HOM05D000237 ORTHO05D006530 3.4e-38 162.5 215 45.6
VMungo0647G1100 Vigna mungo HOM05D000237 ORTHO05D006530 9.9e-38 161.0 208 46.2
Sopen04g025850 Solanum pennellii HOM05D000237 ORTHO05D006530 1.7e-37 160.2 205 45.4
Cfa018423 Carpinus fangiana HOM05D000237 ORTHO05D001145 2.9e-37 159.5 200 48.5
Sed0005866 Sechium edule HOM05D000237 ORTHO05D006530 2.9e-37 159.5 187 48.7
Peaxi162Scf00066g00427 Petunia axillaris HOM05D000237 ORTHO05D006530 3.8e-37 159.1 221 43.4
Hund17350 Selenicereus undatus HOM05D000237 ORTHO05D006530 1.1e-36 157.5 120 63.3
PSO170G5097 Papaver somniferum HOM05D000237 ORTHO05D006530 1.4e-36 157.1 214 43.5
TPR.G30554 Trifolium pratense HOM05D000237 ORTHO05D006530 1.4e-36 157.1 204 47.5
Phvul.001G067600 Phaseolus vulgaris HOM05D000237 ORTHO05D006530 1.9e-36 156.8 207 45.4
Eucgr.E01003 Eucalyptus grandis HOM05D000237 ORTHO05D006530 5.4e-36 155.2 201 45.8
Lj1g0018506 Lotus japonicus HOM05D000237 ORTHO05D006530 5.4e-36 155.2 135 58.5
PSO528G0213 Papaver somniferum HOM05D000237 ORTHO05D006530 5.4e-36 155.2 209 44.5
CANSAT25G1894 Cannabis sativa HOM05D000237 ORTHO05D006530 7.1e-36 154.8 202 46.5
arahy.Tifrunner.gnm1.ann1.6HV4D5 Arachis hypogaea HOM05D000237 ORTHO05D006530 1.6e-35 153.7 99 69.7
Haze_17641 Corylus avellana HOM05D000237 ORTHO05D006530 2.1e-35 153.3 220 43.6
arahy.Tifrunner.gnm1.ann1.A7GBNY Arachis hypogaea HOM05D000237 ORTHO05D006530 2.7e-35 152.9 171 50.9
Ah.05g169070 Amaranthus hybridus HOM05D000237 ORTHO05D006530 7.8e-35 151.4 129 58.1
arahy.Tifrunner.gnm1.ann1.S57KMF Arachis hypogaea HOM05D000237 ORTHO05D006530 1.7e-34 150.2 85 76.5
Migut.C01070 Erythranthe guttata HOM05D000237 ORTHO05D006530 1.7e-34 150.2 200 47.5
SGA_v2.0_scaffold52G18914 Striga asiatica HOM05D000237 ORTHO05D006530 3.0e-34 149.4 223 43.9
Os06g0638000 Oryza sativa ssp. japonica HOM05D000237 ORTHO05D006530 3.9e-34 149.1 194 44.3
PGR044G0116 Punica granatum HOM05D000237 ORTHO05D006530 1.9e-33 146.7 195 46.2
ATR1001G008 Amborella trichopoda HOM05D000237 ORTHO05D006530 4.3e-33 145.6 224 40.6
ClCG09G021810 Citrullus lanatus HOM05D000237 ORTHO05D006530 1.3e-32 144.1 120 59.2
Cc10_g13690 Coffea canephora HOM05D000237 ORTHO05D006530 1.3e-32 144.1 198 44.4
SMO367G0550 Selaginella moellendorffii HOM05D000237 ORTHO05D006530 8.1e-32 141.4 123 57.7
TPR.G40837 Trifolium pratense HOM05D000237 ORTHO05D006530 1.1e-31 141.0 107 65.4
Zm00001eb387360 Zea mays HOM05D000237 ORTHO05D006530 1.1e-31 141.0 137 49.6
Duzib116G0766 Durio zibethinus HOM05D000237 ORTHO05D006530 1.4e-31 140.6 207 45.9
Nn5g28444 Nelumbo nucifera HOM05D000237 ORTHO05D006530 3.1e-31 139.4 200 44.0
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 9.0e-31 137.9 191 42.9
SHI09235 Sapria himalayana HOM05D000237 ORTHO05D006530 1.2e-30 137.5 99 62.6
TPR.G4655 Trifolium pratense HOM05D000237 ORTHO05D013217 1.2e-30 137.5 87 74.7
SEGI_16153 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 2.0e-30 136.7 91 68.1
CDE08G0007 Ceratophyllum demersum HOM05D000237 ORTHO05D006530 7.6e-30 134.8 191 42.9
Nitab4.5_0003485g0030 Nicotiana tabacum HOM05D000237 ORTHO05D006530 7.6e-30 134.8 209 41.6
Mapoly0097s0070 Marchantia polymorpha HOM05D000237 ORTHO05D006530 2.2e-29 133.3 114 59.6
Nitab4.5_0000317g0120 Nicotiana tabacum HOM05D000237 ORTHO05D006530 1.4e-28 130.6 142 50.7
Pp3c2_14590 Physcomitrium patens HOM05D000237 ORTHO05D006530 3.2e-28 129.4 197 39.6
HPP92_004772 Vanilla planifolia HOM05D000237 ORTHO05D006530 4.6e-27 125.6 131 47.3
MD08G1160000 Malus domestica HOM05D000237 ORTHO05D006530 1.3e-21 107.5 56 76.8
CBR_g18950 Chara braunii HOM05D000237 ORTHO05D006530 4.6e-19 99.0 80 56.2
Oeu047172.1 Olea europaea HOM05D000237 ORTHO05D006530 1.0e-13 81.3 45 73.3
unitig_46.g18088 Utricularia gibba HOM05D000237 ORTHO05D006530 1.9e-09 67.0 32 81.2
vmacro21123 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 4.1e-07 59.3 229 27.9


User provided reference genes

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