Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR069290 Cardamine hirsuta HOM05D002484 ORTHO05D002541 4.8e-41 170.6 80 100.0
AT2G26010 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 4.6e-28 127.5 81 74.1
AT5G44430 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 6.1e-28 127.1 81 74.1
A07p41370 Brassica napus HOM05D002484 ORTHO05D002541 3.9e-27 124.4 81 75.3
BraA07t31670Z Brassica rapa HOM05D002484 ORTHO05D002541 3.9e-27 124.4 81 75.3
CARHR069270 Cardamine hirsuta HOM05D002484 ORTHO05D002541 3.9e-27 124.4 81 72.8
AT2G26020 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 5.1e-27 124.0 81 71.6
CARHR284300 Cardamine hirsuta HOM05D002484 ORTHO05D002541 6.7e-27 123.6 81 72.8
Carub.0002s2268 Capsella rubella HOM05D002484 ORTHO05D002541 1.1e-26 122.9 81 74.1
Carub.0002s2269 Capsella rubella HOM05D002484 ORTHO05D002541 1.1e-26 122.9 81 74.1
BcaB05g24952 Brassica carinata HOM05D002484 ORTHO05D002541 1.5e-26 122.5 81 74.1
CARHR069310 Cardamine hirsuta HOM05D002484 ORTHO05D002541 2.0e-26 122.1 81 71.6
Thhalv10019396m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 2.0e-26 122.1 81 74.1
Carub.0002s2271 Capsella rubella HOM05D002484 ORTHO05D002541 2.5e-26 121.7 81 74.1
Carub.0002s2274 Capsella rubella HOM05D002484 ORTHO05D002541 3.3e-26 121.3 81 71.6
A02p20270 Brassica napus HOM05D002484 ORTHO05D002541 4.3e-26 120.9 81 74.1
C06p49790 Brassica napus HOM05D002484 ORTHO05D002541 4.3e-26 120.9 81 72.8
BolC6t38355H Brassica oleracea HOM05D002484 ORTHO05D002541 4.3e-26 120.9 81 71.6
BraA02t07061Z Brassica rapa HOM05D002484 ORTHO05D002541 4.3e-26 120.9 81 74.1
Carub.0002s2270 Capsella rubella HOM05D002484 ORTHO05D002541 4.3e-26 120.9 81 72.8
CARHR069280 Cardamine hirsuta HOM05D002484 ORTHO05D002541 4.3e-26 120.9 81 71.6
BcaC03g15629 Brassica carinata HOM05D002484 ORTHO05D002541 7.4e-26 120.2 81 72.8
C02p33630 Brassica napus HOM05D002484 ORTHO05D002541 7.4e-26 120.2 81 72.8
BolC2t09341H Brassica oleracea HOM05D002484 ORTHO05D002541 7.4e-26 120.2 81 72.8
AL2G35840 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 9.7e-26 119.8 81 70.4
AT5G44420 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 9.7e-26 119.8 81 69.1
CARHR069250 Cardamine hirsuta HOM05D002484 ORTHO05D002541 1.7e-25 119.0 81 71.6
BcaB02g07045 Brassica carinata HOM05D002484 ORTHO05D002541 2.2e-25 118.6 81 70.4
BcaB02g07044 Brassica carinata HOM05D002484 ORTHO05D002541 2.8e-25 118.2 81 72.8
BcaC08g47321 Brassica carinata HOM05D002484 ORTHO05D002541 3.7e-25 117.9 81 69.1
CARHR069370 Cardamine hirsuta HOM05D002484 ORTHO05D002541 3.7e-25 117.9 81 70.4
AT1G75830 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 6.3e-25 117.1 81 67.9
A07p28700 Brassica napus HOM05D002484 ORTHO05D002541 6.3e-25 117.1 81 70.4
BraA07t30510Z Brassica rapa HOM05D002484 ORTHO05D002541 6.3e-25 117.1 81 70.4
A07p41360 Brassica napus HOM05D002484 ORTHO05D002541 8.2e-25 116.7 81 67.9
BraA07t31669Z Brassica rapa HOM05D002484 ORTHO05D002541 8.2e-25 116.7 81 67.9
C06p32330 Brassica napus HOM05D002484 ORTHO05D002541 1.1e-24 116.3 81 70.4
Carub.0002s2272 Capsella rubella HOM05D002484 ORTHO05D002541 1.1e-24 116.3 81 70.4
Thhalv10019395m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 1.1e-24 116.3 81 67.9
Thhalv10019397m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 1.1e-24 116.3 81 70.4
BcaC08g45552 Brassica carinata HOM05D002484 ORTHO05D002541 1.8e-24 115.5 81 70.4
C06p32340 Brassica napus HOM05D002484 ORTHO05D002541 1.8e-24 115.5 81 70.4
BcaC08g47074 Brassica carinata HOM05D002484 ORTHO05D002541 3.1e-24 114.8 81 65.4
Thhalv10019399m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 3.1e-24 114.8 81 71.6
Thhalv10019398m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 4.1e-24 114.4 81 70.4
Sp5g30950 Schrenkiella parvula HOM05D002484 ORTHO05D002541 4.1e-24 114.4 81 70.4
Carub.0002s2273 Capsella rubella HOM05D002484 ORTHO05D002541 5.3e-24 114.0 81 69.1
A07p41390 Brassica napus HOM05D002484 ORTHO05D002541 1.2e-23 112.8 81 70.4
BraA07t31672Z Brassica rapa HOM05D002484 ORTHO05D002541 1.2e-23 112.8 81 70.4
Sp5g30970 Schrenkiella parvula HOM05D002484 ORTHO05D002541 1.5e-23 112.5 81 70.4
Carub.0007s3201 Capsella rubella HOM05D002484 ORTHO05D002541 2.6e-23 111.7 81 70.4
C06p32380 Brassica napus HOM05D002484 ORTHO05D002541 4.5e-23 110.9 81 67.9
Aqoxy5G01512 Aquilegia oxysepala HOM05D002484 ORTHO05D002541 5.9e-23 110.5 81 64.2
Thhalv10000662m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 7.7e-23 110.2 81 66.7
BcaC08g45554 Brassica carinata HOM05D002484 ORTHO05D002541 1.0e-22 109.8 81 66.7
BcaC08g45556 Brassica carinata HOM05D002484 ORTHO05D002541 1.0e-22 109.8 81 66.7
Thhalv10019394m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 1.3e-22 109.4 81 65.4
Aqoxy4G00457 Aquilegia oxysepala HOM05D002484 ORTHO05D002541 1.7e-22 109.0 81 65.4
CARHR069320 Cardamine hirsuta HOM05D002484 ORTHO05D002541 6.5e-22 107.1 82 63.4
AL1G66200 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 2.5e-21 105.1 82 67.1
AL7G45400 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 2.5e-21 105.1 81 69.1
CARHR069380 Cardamine hirsuta HOM05D002484 ORTHO05D002541 3.2e-21 104.8 77 68.8
CARHR216420 Cardamine hirsuta HOM05D002484 ORTHO05D002541 5.5e-21 104.0 81 60.5
A02p20250 Brassica napus HOM05D002484 ORTHO05D002541 7.2e-21 103.6 81 59.3
C02p33650 Brassica napus HOM05D002484 ORTHO05D002541 7.2e-21 103.6 81 59.3
BolC2t09339H Brassica oleracea HOM05D002484 ORTHO05D002541 7.2e-21 103.6 81 59.3
BraA02t07059Z Brassica rapa HOM05D002484 ORTHO05D002541 7.2e-21 103.6 81 59.3
BcaC08g45551 Brassica carinata HOM05D002484 ORTHO05D002541 2.1e-20 102.1 81 65.4
Carub.0002s1189 Capsella rubella HOM05D002484 ORTHO05D002541 3.6e-20 101.3 83 62.7
BcaB05g24945 Brassica carinata HOM05D002484 ORTHO05D002541 3.9e-19 97.8 81 56.8
BcaB05g24946 Brassica carinata HOM05D002484 ORTHO05D002541 3.9e-19 97.8 81 56.8
AL2G35830 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 2.6e-18 95.1 65 63.1
BcaC03g15628 Brassica carinata HOM05D002484 ORTHO05D002541 3.3e-18 94.7 93 51.6
A02p20260 Brassica napus HOM05D002484 ORTHO05D002541 2.4e-16 88.6 83 55.4
C02p33640 Brassica napus HOM05D002484 ORTHO05D002541 2.4e-16 88.6 83 55.4
BolC2t09340H Brassica oleracea HOM05D002484 ORTHO05D002541 2.4e-16 88.6 83 55.4
BraA02t07060Z Brassica rapa HOM05D002484 ORTHO05D002541 2.4e-16 88.6 83 55.4
Aqoxy4G00455 Aquilegia oxysepala HOM05D002484 ORTHO05D002541 4.1e-16 87.8 59 67.8
CARHR216400 Cardamine hirsuta HOM05D002484 ORTHO05D002541 1.7e-14 82.4 83 56.6
CARHR069260 Cardamine hirsuta HOM05D002484 ORTHO05D002541 2.2e-14 82.0 81 55.6
Thhalv10000535m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 5.0e-14 80.9 81 55.6
BcaB05g24949 Brassica carinata HOM05D002484 ORTHO05D002541 2.5e-13 78.6 83 55.4
C02p33860 Brassica napus HOM05D002484 ORTHO05D002541 2.5e-13 78.6 82 54.9
A07p41400 Brassica napus HOM05D002484 ORTHO05D002541 4.2e-13 77.8 83 56.6
AT1G55010 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 6.1e-12 73.9 82 46.3
BolC2t09321H Brassica oleracea HOM05D002484 ORTHO05D002541 6.1e-12 73.9 82 52.4
BcaC03g15604 Brassica carinata HOM05D002484 ORTHO05D002541 1.0e-11 73.2 87 51.7
A05p05350 Brassica napus HOM05D002484 ORTHO05D002541 1.8e-11 72.4 81 48.1
BraA05t19505Z Brassica rapa HOM05D002484 ORTHO05D002541 1.8e-11 72.4 81 48.1
A05p05270 Brassica napus HOM05D002484 ORTHO05D002541 2.3e-11 72.0 81 45.7
AL1G65590 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 3.0e-11 71.6 82 47.6
A05p05280 Brassica napus HOM05D002484 ORTHO05D002541 3.0e-11 71.6 80 46.2
BcaC08g47323 Brassica carinata HOM05D002484 ORTHO05D002541 8.8e-11 70.1 46 63.0
C04p06270 Brassica napus HOM05D002484 ORTHO05D002541 1.1e-10 69.7 81 44.4
BcaC02g12225 Brassica carinata HOM05D002484 ORTHO05D002541 2.0e-10 68.9 81 45.7
BcaC08g47076 Brassica carinata HOM05D002484 ORTHO05D002541 2.0e-10 68.9 48 75.0
C04p06250 Brassica napus HOM05D002484 ORTHO05D002541 2.0e-10 68.9 81 44.4
BcaC02g12223 Brassica carinata HOM05D002484 ORTHO05D002541 2.6e-10 68.6 81 44.4
BcaC02g12226 Brassica carinata HOM05D002484 ORTHO05D002541 2.6e-10 68.6 81 44.4
C04p06240 Brassica napus HOM05D002484 ORTHO05D002541 3.3e-10 68.2 81 44.4
Migut.N00483 Erythranthe guttata HOM05D002484 ORTHO05D002541 3.3e-10 68.2 71 45.1
DCAR_028974 Daucus carota HOM05D002484 ORTHO05D002541 4.4e-10 67.8 82 40.2
A05p26930 Brassica napus HOM05D002484 ORTHO05D002541 5.7e-10 67.4 80 41.2
BraA05t21573Z Brassica rapa HOM05D002484 ORTHO05D002541 5.7e-10 67.4 80 41.2
COL.COLO4_25964 Corchorus olitorius HOM05D002484 ORTHO05D002541 7.5e-10 67.0 84 46.4
Atru.chr5.3054 Acer truncatum HOM05D002484 ORTHO05D002541 9.7e-10 66.6 84 42.9
A06p39910 Brassica napus HOM05D002484 ORTHO05D002541 1.3e-09 66.2 81 43.2
BolC4t22248H Brassica oleracea HOM05D002484 ORTHO05D002541 1.3e-09 66.2 81 43.2
Hma1.2p1_1051F.1_g252040 Hydrangea macrophylla HOM05D002484 ORTHO05D002541 1.3e-09 66.2 83 50.6
Ciclev10030125m.g Citrus clementina HOM05D002484 ORTHO05D002541 1.7e-09 65.9 81 44.4
BraA06t26906Z Brassica rapa HOM05D002484 ORTHO05D002541 2.2e-09 65.5 81 42.0
Carub.0001s1915 Capsella rubella HOM05D002484 ORTHO05D002541 2.8e-09 65.1 81 42.0
AL1G32330 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 8.2e-09 63.5 81 40.7
AL8G15430 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 8.2e-09 63.5 38 84.2
C01p00390 Brassica napus HOM05D002484 ORTHO05D002541 8.2e-09 63.5 77 40.3
AT1G19610 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 1.4e-08 62.8 81 40.7
BcaB02g08968 Brassica carinata HOM05D002484 ORTHO05D002541 1.4e-08 62.8 81 43.2
Ciclev10029712m.g Citrus clementina HOM05D002484 ORTHO05D002541 1.4e-08 62.8 85 44.7
Ciclev10029828m.g Citrus clementina HOM05D002484 ORTHO05D002541 1.4e-08 62.8 85 44.7
Sp1g17450 Schrenkiella parvula HOM05D002484 ORTHO05D002541 1.4e-08 62.8 78 39.7
BcaB02g08940 Brassica carinata HOM05D002484 ORTHO05D002541 1.8e-08 62.4 81 43.2
Thhalv10009242m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 1.8e-08 62.4 78 39.7
CARHR247530 Cardamine hirsuta HOM05D002484 ORTHO05D002541 3.1e-08 61.6 81 39.5
Prupe.1G376000 Prunus persica HOM05D002484 ORTHO05D002541 3.1e-08 61.6 74 45.9
Thecc.08G031200 Theobroma cacao HOM05D002484 ORTHO05D002541 3.1e-08 61.6 56 50.0
Carub.0007s0110 Capsella rubella HOM05D002484 ORTHO05D002541 4.1e-08 61.2 81 38.3
Atru.chr5.3052 Acer truncatum HOM05D002484 ORTHO05D002541 5.3e-08 60.8 78 38.5
BcaB02g08967 Brassica carinata HOM05D002484 ORTHO05D002541 7.0e-08 60.5 81 42.0
BcaB03g12908 Brassica carinata HOM05D002484 ORTHO05D002541 7.0e-08 60.5 77 39.0
Sed0028225 Sechium edule HOM05D002484 ORTHO05D002541 7.0e-08 60.5 81 42.0
BraA08t34910Z Brassica rapa HOM05D002484 ORTHO05D002541 9.1e-08 60.1 77 39.0
Thhalv10029442m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 9.1e-08 60.1 81 39.5
HanXRQChr04g0128041 Helianthus annuus HOM05D002484 ORTHO05D002541 9.1e-08 60.1 66 45.5
RcHm_v2.0_Chr6g0301471 Rosa chinensis HOM05D002484 ORTHO05D002541 9.1e-08 60.1 75 46.7
BcaB02g08969 Brassica carinata HOM05D002484 ORTHO05D002541 1.2e-07 59.7 81 42.0
Psat4g203560 Pisum sativum HOM05D002484 ORTHO05D002541 1.2e-07 59.7 81 43.2
BolC8t49576H Brassica oleracea HOM05D002484 ORTHO05D002541 1.6e-07 59.3 78 37.2
BcaNung01275 Brassica carinata HOM05D002484 ORTHO05D002541 2.0e-07 58.9 72 43.1
PGSC0003DMG400008516 Solanum tuberosum HOM05D002484 ORTHO05D002541 2.0e-07 58.9 50 54.0
Lsat_1_v5_gn_5_65860 Lactuca sativa HOM05D002484 ORTHO05D002541 2.7e-07 58.5 80 42.5
MD08G1027500 Malus domestica HOM05D002484 ORTHO05D002541 2.7e-07 58.5 52 50.0
DCAR_001564 Daucus carota HOM05D002484 ORTHO05D002541 3.5e-07 58.2 82 40.2
ECA236G2297 Erigeron canadensis HOM05D002484 ORTHO05D002541 3.5e-07 58.2 77 36.4
HanXRQChr16g0505511 Helianthus annuus HOM05D002484 ORTHO05D002541 3.5e-07 58.2 80 40.0
PGR031G0268 Punica granatum HOM05D002484 ORTHO05D002541 3.5e-07 58.2 63 44.4
Carub.0007s0108 Capsella rubella HOM05D002484 ORTHO05D002541 4.5e-07 57.8 80 40.0
ECA236G2706 Erigeron canadensis HOM05D002484 ORTHO05D002541 4.5e-07 57.8 80 41.2
HanXRQChr16g0505521 Helianthus annuus HOM05D002484 ORTHO05D002541 4.5e-07 57.8 80 41.2
BraA07t31673Z Brassica rapa HOM05D002484 ORTHO05D002541 5.9e-07 57.4 39 79.5
FAN20G1957 Fragaria x ananassa HOM05D002484 ORTHO05D002541 5.9e-07 57.4 74 45.9
HanXRQChr16g0506041 Helianthus annuus HOM05D002484 ORTHO05D002541 5.9e-07 57.4 73 34.2
Lsat_1_v5_gn_7_90800 Lactuca sativa HOM05D002484 ORTHO05D002541 5.9e-07 57.4 48 47.9
ATR1149G048 Amborella trichopoda HOM05D002484 ORTHO05D002541 7.7e-07 57.0 81 40.7
PGR031G2841 Punica granatum HOM05D002484 ORTHO05D002541 7.7e-07 57.0 76 42.1
MELO3C018229.2 Cucumis melo HOM05D002484 ORTHO05D002541 1.3e-06 56.2 75 41.3
AL7G11150 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 1.7e-06 55.8 81 38.3
Atru.chr13.431 Acer truncatum HOM05D002484 ORTHO05D002541 2.2e-06 55.5 74 43.2
Aa31LG7G4230 Aethionema arabicum HOM05D002484 ORTHO05D002541 2.2e-06 55.5 51 45.1
HanXRQChr03g0074221 Helianthus annuus HOM05D002484 ORTHO05D002541 2.2e-06 55.5 67 40.3
HanXRQChr03g0074231 Helianthus annuus HOM05D002484 ORTHO05D002541 2.2e-06 55.5 54 44.4
HanXRQChr03g0074241 Helianthus annuus HOM05D002484 ORTHO05D002541 2.2e-06 55.5 54 44.4
Lsat_1_v5_gn_7_90700 Lactuca sativa HOM05D002484 ORTHO05D002541 2.2e-06 55.5 56 44.6
Peaxi162Scf00324g00715 Petunia axillaris HOM05D002484 ORTHO05D002541 2.2e-06 55.5 82 39.0
Actinidia27667 Actinidia chinensis HOM05D002484 ORTHO05D002541 3.8e-06 54.7 80 37.5
Peaxi162Scf00324g00722 Petunia axillaris HOM05D002484 ORTHO05D002541 3.8e-06 54.7 84 41.7
BcaC08g43338 Brassica carinata HOM05D002484 ORTHO05D002541 6.5e-06 53.9 63 39.7
BraA07t31386Z Brassica rapa HOM05D002484 ORTHO05D002541 6.5e-06 53.9 86 34.9
ECA236G3870 Erigeron canadensis HOM05D002484 ORTHO05D002541 6.5e-06 53.9 81 37.0
Nitab4.5_0000023g0330 Nicotiana tabacum HOM05D002484 ORTHO05D002541 6.5e-06 53.9 53 49.1
Aqoxy5G01140 Aquilegia oxysepala HOM05D002484 ORTHO05D002541 8.5e-06 53.5 71 38.0
CsaV3_3G044510 Cucumis sativus L. HOM05D002484 ORTHO05D002541 8.5e-06 53.5 75 40.0
HanXRQChr16g0505831 Helianthus annuus HOM05D002484 ORTHO05D002541 8.5e-06 53.5 73 37.0
Lsat_1_v5_gn_7_90580 Lactuca sativa HOM05D002484 ORTHO05D002541 8.5e-06 53.5 56 42.9


User provided reference genes

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