Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR068160 Cardamine hirsuta HOM05D006217 ORTHO05D008480 8.3e-140 500.4 253 100.0
BcaC08g46950 Brassica carinata HOM05D006217 ORTHO05D008480 5.6e-112 407.9 242 87.6
Thhalv10018112m.g Eutrema salsugineum HOM05D006217 ORTHO05D008480 9.6e-112 407.1 243 88.5
BraA07t31592Z Brassica rapa HOM05D006217 ORTHO05D008480 3.7e-111 405.2 242 86.8
A07p40490 Brassica napus HOM05D006217 ORTHO05D008480 6.2e-111 404.4 242 86.8
C06p48860 Brassica napus HOM05D006217 ORTHO05D008480 1.1e-110 403.7 242 87.2
BolC6t39922H Brassica oleracea HOM05D006217 ORTHO05D008480 1.1e-110 403.7 242 87.2
BcaC08g46908 Brassica carinata HOM05D006217 ORTHO05D008480 2.4e-110 402.5 242 86.8
Carub.0002s2163 Capsella rubella HOM05D006217 ORTHO05D008480 3.1e-110 402.1 243 86.4
BcaC08g46912 Brassica carinata HOM05D006217 ORTHO05D008480 5.3e-110 401.4 243 86.4
AT1G74850 Arabidopsis thaliana HOM05D006217 ORTHO05D008480 2.9e-108 395.6 241 87.1
AL2G34730 Arabidopsis lyrata HOM05D006217 ORTHO05D008480 1.4e-107 393.3 241 85.5
Aa31LG4G5060 Aethionema arabicum HOM05D006217 ORTHO05D008480 2.4e-107 392.5 238 84.9
Sp5g29980 Schrenkiella parvula HOM05D006217 ORTHO05D008480 4.2e-107 391.7 242 84.7
THA.LOC104809230 Tarenaya hassleriana HOM05D006217 ORTHO05D008480 1.3e-97 360.1 241 78.4
Cpa.g.sc35.13 Carica papaya HOM05D006217 ORTHO05D008480 4.6e-90 335.1 252 67.5
CiPaw.11G034100 Carya illinoinensis HOM05D006217 ORTHO05D008480 3.7e-87 325.5 240 67.9
QL10p013967 Quercus lobata HOM05D006217 ORTHO05D008480 8.2e-87 324.3 223 71.7
Actinidia04949 Actinidia chinensis HOM05D006217 ORTHO05D008480 1.4e-86 323.6 252 65.5
TWI15G0191 Tripterygium wilfordii HOM05D006217 ORTHO05D008480 1.4e-86 323.6 232 70.3
CANSAT80G1888 Cannabis sativa HOM05D006217 ORTHO05D008480 4.1e-86 322.0 242 66.1
Manes.06G099200 Manihot esculenta HOM05D006217 ORTHO05D008480 4.1e-86 322.0 231 68.8
MD14G1189200 Malus domestica HOM05D006217 ORTHO05D008480 9.1e-86 320.9 233 67.4
Duzib205G0682 Durio zibethinus HOM05D006217 ORTHO05D008480 1.5e-85 320.1 227 70.0
Sabra15G0093400 Salix brachista HOM05D006217 ORTHO05D008480 4.5e-85 318.5 236 66.9
Prupe.5G181900 Prunus persica HOM05D006217 ORTHO05D008480 5.9e-85 318.2 233 67.0
MD06G1183200 Malus domestica HOM05D006217 ORTHO05D008480 1.0e-84 317.4 233 67.8
CSS0020542 Camellia sinensis var. sinensis HOM05D006217 ORTHO05D008480 1.3e-84 317.0 252 65.1
Eucgr.K02896 Eucalyptus grandis HOM05D006217 ORTHO05D008480 1.7e-84 316.6 249 66.3
Atru.BG.200.p Acer truncatum HOM05D006217 ORTHO05D008480 2.2e-84 316.2 226 69.9
FvH4_5g16180 Fragaria vesca HOM05D006217 ORTHO05D008480 2.2e-84 316.2 249 63.1
Nn4g22966 Nelumbo nucifera HOM05D006217 ORTHO05D008480 5.0e-84 315.1 255 62.7
RcHm_v2.0_Chr7g0179951 Rosa chinensis HOM05D006217 ORTHO05D008480 1.1e-83 313.9 249 62.7
Hma1.2p1_0572F.1_g181090 Hydrangea macrophylla HOM05D006217 ORTHO05D008480 1.6e-82 310.1 228 70.2
Potri.015G069100 Populus trichocarpa HOM05D006217 ORTHO05D008480 1.6e-82 310.1 231 66.7
CSS0050348 Camellia sinensis var. sinensis HOM05D006217 ORTHO05D008480 2.1e-82 309.7 252 63.9
CsaV3_1G008120 Cucumis sativus L. HOM05D006217 ORTHO05D008480 2.1e-82 309.7 230 67.0
GSVIVG01007844001 Vitis vinifera HOM05D006217 ORTHO05D008480 4.6e-82 308.5 228 66.7
PGR044G0185 Punica granatum HOM05D006217 ORTHO05D008480 7.9e-82 307.8 247 64.8
CSS0026115 Camellia sinensis var. sinensis HOM05D006217 ORTHO05D008480 1.8e-81 306.6 252 63.9
ClCG01G014190 Citrullus lanatus HOM05D006217 ORTHO05D008480 2.3e-81 306.2 227 68.7
MELO3C002229.2 Cucumis melo HOM05D006217 ORTHO05D008480 5.1e-81 305.1 230 67.0
vmacro19344 Vaccinium macrocarpon HOM05D006217 ORTHO05D008480 6.7e-81 304.7 240 64.2
Gohir.D12G277600 Gossypium hirsutum HOM05D006217 ORTHO05D008480 8.8e-81 304.3 217 67.7
Rhsim08G0164000 Rhododendron simsii HOM05D006217 ORTHO05D008480 8.8e-81 304.3 224 67.4
COL.COLO4_26823 Corchorus olitorius HOM05D006217 ORTHO05D008480 1.5e-80 303.5 249 60.2
Gorai.008G298300 Gossypium raimondii HOM05D006217 ORTHO05D008480 2.0e-80 303.1 217 67.3
Lalb_Chr12g0201281 Lupinus albus HOM05D006217 ORTHO05D008480 2.6e-80 302.8 233 64.8
PGSC0003DMG400024573 Solanum tuberosum HOM05D006217 ORTHO05D008480 2.6e-80 302.8 252 60.3
Dinv13121 Davidia involucrata HOM05D006217 ORTHO05D008480 4.4e-80 302.0 257 63.0
Gohir.A12G276600 Gossypium hirsutum HOM05D006217 ORTHO05D008480 4.4e-80 302.0 217 67.3
TAR622G0668 Trochodendron aralioides HOM05D006217 ORTHO05D008480 5.7e-80 301.6 242 62.8
CAN.G853.39 Capsicum annuum HOM05D006217 ORTHO05D008480 1.3e-79 300.4 252 60.3
Ciclev10018817m.g Citrus clementina HOM05D006217 ORTHO05D008480 2.2e-79 299.7 226 65.9
Sopen03g032670 Solanum pennellii HOM05D006217 ORTHO05D008480 2.8e-79 299.3 252 59.1
Haze_07417 Corylus avellana HOM05D006217 ORTHO05D008480 3.7e-79 298.9 232 63.8
Peaxi162Scf00017g02228 Petunia axillaris HOM05D006217 ORTHO05D008480 4.8e-79 298.5 232 63.4
Solyc03g113630.3 Solanum lycopersicum HOM05D006217 ORTHO05D008480 8.2e-79 297.7 252 59.9
MSTRG.23079 Avicennia marina HOM05D006217 ORTHO05D008480 1.1e-78 297.4 228 65.8
TPR.G38418 Trifolium pratense HOM05D006217 ORTHO05D008480 1.4e-78 297.0 233 62.7
Lj4g0005624 Lotus japonicus HOM05D006217 ORTHO05D008480 1.8e-78 296.6 233 63.5
Glyma.17G094300 Glycine max HOM05D006217 ORTHO05D008480 2.4e-78 296.2 233 64.4
DCAR_016511 Daucus carota HOM05D006217 ORTHO05D008480 9.1e-78 294.3 264 59.1
Medtr4g107210 Medicago truncatula HOM05D006217 ORTHO05D008480 9.1e-78 294.3 234 61.1
Glyma.05G032300 Glycine max HOM05D006217 ORTHO05D008480 1.2e-77 293.9 233 63.5
arahy.Tifrunner.gnm1.ann1.KCM1HB Arachis hypogaea HOM05D006217 ORTHO05D008480 1.5e-77 293.5 215 67.4
Cc04_g16120 Coffea canephora HOM05D006217 ORTHO05D008480 3.4e-77 292.4 234 63.7
arahy.Tifrunner.gnm1.ann1.C8Z94U Arachis hypogaea HOM05D006217 ORTHO05D008480 4.5e-77 292.0 230 63.5
Lj9C455T7 Lonicera japonica HOM05D006217 ORTHO05D008480 5.9e-77 291.6 252 60.7
MBI15_g21026_MAGBIO Magnolia biondii HOM05D006217 ORTHO05D008480 7.7e-77 291.2 223 65.0
Psat4g055880 Pisum sativum HOM05D006217 ORTHO05D008480 1.7e-76 290.0 233 61.4
SalBow5G1548 Salvia bowleyana HOM05D006217 ORTHO05D008480 5.0e-76 288.5 230 62.6
Ca_21873_v3 Cicer arietinum L. HOM05D006217 ORTHO05D008480 1.9e-75 286.6 230 62.6
Aqoxy3G03170 Aquilegia oxysepala HOM05D006217 ORTHO05D008480 5.5e-75 285.0 243 60.9
Migut.I00075 Erythranthe guttata HOM05D006217 ORTHO05D008480 2.1e-74 283.1 238 60.9
Phvul.003G195800 Phaseolus vulgaris HOM05D006217 ORTHO05D008480 3.6e-74 282.3 215 67.0
ECA232G4291 Erigeron canadensis HOM05D006217 ORTHO05D008480 4.7e-74 282.0 221 62.9
ATR0681G229 Amborella trichopoda HOM05D006217 ORTHO05D008480 1.8e-73 280.0 235 59.1
SGA_v2.0_scaffold56G20089 Striga asiatica HOM05D006217 ORTHO05D008480 3.9e-73 278.9 233 61.4
EL10Ac5g10869 Beta vulgaris HOM05D006217 ORTHO05D008480 1.5e-72 276.9 252 57.9
HanXRQChr16g0503451 Helianthus annuus HOM05D006217 ORTHO05D008480 5.7e-72 275.0 221 61.1
VMungo1215G1148 Vigna mungo HOM05D006217 ORTHO05D008480 5.7e-72 275.0 215 64.7
Sc12g0005700 Simmondsia chinensis HOM05D006217 ORTHO05D008480 4.8e-71 271.9 254 55.9
AUR62008306 Chenopodium quinoa HOM05D006217 ORTHO05D008480 8.2e-71 271.2 234 60.7
AUR62021789 Chenopodium quinoa HOM05D006217 ORTHO05D008480 4.1e-70 268.9 234 60.3
CDE10G0083 Ceratophyllum demersum HOM05D006217 ORTHO05D008480 1.2e-69 267.3 212 61.3
CDE10G0055 Ceratophyllum demersum HOM05D006217 ORTHO05D008480 1.0e-68 264.2 211 60.7
Lsat_1_v5_gn_4_74540 Lactuca sativa HOM05D006217 ORTHO05D008480 3.8e-68 262.3 217 60.8
PSO832G0921 Papaver somniferum HOM05D006217 ORTHO05D008480 3.8e-68 262.3 223 59.2
PSO591G0410 Papaver somniferum HOM05D006217 ORTHO05D008480 5.0e-68 261.9 222 59.9
Hund02699 Selenicereus undatus HOM05D006217 ORTHO05D008480 8.5e-68 261.2 254 56.7
Os03g0824100 Oryza sativa ssp. japonica HOM05D006217 ORTHO05D008480 1.6e-66 256.9 238 56.7
HPP92_019917 Vanilla planifolia HOM05D006217 ORTHO05D008480 6.1e-66 255.0 212 59.4
Zm00001eb331750 Zea mays HOM05D006217 ORTHO05D008480 7.5e-64 248.1 228 54.8
unitig_750.g28482 Utricularia gibba HOM05D006217 ORTHO05D008480 1.6e-61 240.4 180 66.1
SEGI_32227 Sequoiadendron giganteum HOM05D006217 ORTHO05D008480 2.9e-60 236.1 222 55.0
SEGI_07964 Sequoiadendron giganteum HOM05D006217 ORTHO05D008480 5.0e-60 235.3 247 51.0
ECA232G0106 Erigeron canadensis HOM05D006217 ORTHO05D008480 9.8e-48 194.5 226 46.9
Sed0019903 Sechium edule HOM05D006217 ORTHO05D008480 1.7e-44 183.7 99 83.8
Mapoly0003s0152 Marchantia polymorpha HOM05D006217 ORTHO05D008480 2.3e-44 183.3 192 47.4
Ah.11g046350 Amaranthus hybridus HOM05D006217 ORTHO05D008480 3.3e-43 179.5 106 76.4
Pp3c11_11830 Physcomitrium patens HOM05D006217 ORTHO05D008480 4.9e-39 165.6 234 39.7
SMO353G0114 Selaginella moellendorffii HOM05D006217 ORTHO05D008480 6.6e-36 155.2 199 42.2
AagrBONN_evm.TU.Sc2ySwM_362.2637 Anthoceros agrestis HOM05D006217 ORTHO05D008480 2.6e-32 143.3 218 34.9
FAN04G0516 Fragaria x ananassa HOM05D006217 ORTHO05D008480 1.9e-27 127.1 144 50.0
FAN08G1390 Fragaria x ananassa HOM05D006217 ORTHO05D008480 4.3e-27 125.9 144 49.3
FAN13G2523 Fragaria x ananassa HOM05D006217 ORTHO05D008480 4.3e-27 125.9 144 50.0
FAN18G2370 Fragaria x ananassa HOM05D006217 ORTHO05D008480 4.3e-27 125.9 144 50.0
CBR_g63077 Chara braunii HOM05D006217 ORTHO05D008480 1.4e-17 94.4 162 34.0
Pp3c4_4900 Physcomitrium patens HOM05D006217 ORTHO05D005119 4.9e-15 85.9 189 29.1
CBR_g9159 Chara braunii HOM05D004127 ORTHO05D005119 1.1e-14 84.7 199 29.6
FvH4_5g08849 Fragaria vesca HOM05D006217 ORTHO05D008480 7.8e-13 78.6 85 43.5
AagrBONN_evm.TU.Sc2ySwM_117.2521 Anthoceros agrestis HOM05D004127 ORTHO05D005119 8.1e-10 68.6 228 25.0
Pp3c6_15900 Physcomitrium patens HOM05D004127 ORTHO05D005119 1.1e-09 68.2 148 27.0
CBR_g41643 Chara braunii HOM05D005862 ORTHO05D007731 1.8e-09 67.4 127 35.4
Mapoly0036s0086 Marchantia polymorpha HOM05D004127 ORTHO05D005119 4.0e-09 66.2 183 26.8
Mapoly0154s0039 Marchantia polymorpha HOM05D004127 ORTHO05D005119 5.2e-09 65.9 182 26.9
RcHm_v2.0_Chr3g0487361 Rosa chinensis HOM05D004127 ORTHO05D005119 2.0e-08 63.9 185 26.5
Sed0017741 Sechium edule HOM05D006217 ORTHO05D011532 2.0e-08 63.9 67 50.7
PSO170G0800 Papaver somniferum HOM05D004127 ORTHO05D005119 1.7e-07 60.8 192 27.6
CBR_g31210 Chara braunii HOM05D004127 ORTHO05D005119 2.9e-07 60.1 169 29.0
Glyma.09G013400 Glycine max HOM05D002244 ORTHO05D002269 4.9e-07 59.3 167 25.7
EL10As5g23557 Beta vulgaris HOM05D004127 ORTHO05D005119 6.4e-07 58.9 187 27.8
PGR083G1839 Punica granatum HOM05D004127 ORTHO05D005119 6.4e-07 58.9 187 26.7
Pp3c14_15490 Physcomitrium patens HOM05D004127 ORTHO05D005119 8.4e-07 58.5 166 28.3
CBR_g31394 Chara braunii HOM05D004127 ORTHO05D005119 1.4e-06 57.8 168 28.0
MD09G1284400 Malus domestica HOM05D004127 ORTHO05D005119 1.9e-06 57.4 186 26.9
Prupe.3G010400 Prunus persica HOM05D004127 ORTHO05D005119 1.9e-06 57.4 188 27.1
THA.LOC104809612 Tarenaya hassleriana HOM05D004127 ORTHO05D005119 2.4e-06 57.0 224 24.1
Glyma.15G118200 Glycine max HOM05D002244 ORTHO05D002269 4.2e-06 56.2 133 26.3
Actinidia17915 Actinidia chinensis HOM05D004127 ORTHO05D005119 7.1e-06 55.5 183 25.1
Nitab4.5_0000363g0190 Nicotiana tabacum HOM05D004127 ORTHO05D005119 9.3e-06 55.1 183 24.6
Nitab4.5_0007407g0040 Nicotiana tabacum HOM05D004127 ORTHO05D005119 9.3e-06 55.1 183 24.6
THA.LOC104819204 Tarenaya hassleriana HOM05D004127 ORTHO05D005119 9.3e-06 55.1 190 25.3


User provided reference genes

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