Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR060610 Cardamine hirsuta HOM05D003836 ORTHO05D004556 0.0e+00 1218.4 626 100.0
AL2G26960 Arabidopsis lyrata HOM05D003836 ORTHO05D004556 1.0e-300 1036.2 635 86.5
AT1G67960 Arabidopsis thaliana HOM05D003836 ORTHO05D004556 5.7e-299 1030.4 636 85.4
Carub.0002s1445 Capsella rubella HOM05D003836 ORTHO05D004556 1.5e-294 1015.8 633 85.0
Sp5g22940 Schrenkiella parvula HOM05D003836 ORTHO05D004556 1.9e-294 1015.4 642 84.6
Thhalv10018303m.g Eutrema salsugineum HOM05D003836 ORTHO05D004556 1.2e-277 959.5 645 80.6
A07p34480 Brassica napus HOM05D003836 ORTHO05D004556 1.8e-252 875.9 628 76.6
Aa31sc536G20 Aethionema arabicum HOM05D003836 ORTHO05D004556 9.6e-246 853.6 674 71.4
BcaB03g15387 Brassica carinata HOM05D003836 ORTHO05D004556 4.2e-241 838.2 643 73.6
BcaC08g46221 Brassica carinata HOM05D003836 ORTHO05D004556 7.9e-224 780.8 630 70.5
BolC6t39223H Brassica oleracea HOM05D003836 ORTHO05D004556 1.2e-216 756.9 585 72.1
Manes.15G136900 Manihot esculenta HOM05D003836 ORTHO05D004556 1.2e-192 677.2 642 59.5
Gorai.008G170400 Gossypium raimondii HOM05D003836 ORTHO05D004556 6.1e-192 674.9 623 60.8
Manes.17G086000 Manihot esculenta HOM05D003836 ORTHO05D004556 1.2e-190 670.6 639 59.9
BcaB03g15147 Brassica carinata HOM05D003836 ORTHO05D004556 2.6e-190 669.5 592 64.7
Gorai.013G030000 Gossypium raimondii HOM05D003836 ORTHO05D004556 1.7e-189 666.8 634 59.9
Cfa015051 Carpinus fangiana HOM05D003836 ORTHO05D004556 6.3e-189 664.8 677 56.7
FvH4_4g33240 Fragaria vesca HOM05D003836 ORTHO05D004556 2.4e-188 662.9 631 57.2
C06p42030 Brassica napus HOM05D003836 ORTHO05D004556 3.1e-188 662.5 585 65.6
TWI74G0623 Tripterygium wilfordii HOM05D003836 ORTHO05D004556 5.4e-188 661.8 634 58.5
Potri.010G103400 Populus trichocarpa HOM05D003836 ORTHO05D004556 4.5e-187 658.7 632 58.5
Atru.chr7.2694 Acer truncatum HOM05D003836 ORTHO05D004556 6.5e-186 654.8 624 59.1
CiPaw.05G187900 Carya illinoinensis HOM05D003836 ORTHO05D004556 8.5e-186 654.4 667 56.5
Gohir.A13G027900 Gossypium hirsutum HOM05D003836 ORTHO05D004556 1.6e-184 650.2 516 66.9
Aqoxy6G01037 Aquilegia oxysepala HOM05D003836 ORTHO05D004556 4.7e-184 648.7 496 66.3
Ciclev10014689m.g Citrus clementina HOM05D003836 ORTHO05D004556 6.1e-184 648.3 637 57.8
CANSAT78G2203 Cannabis sativa HOM05D003836 ORTHO05D004556 8.0e-184 647.9 669 55.8
Glyma.04G189300 Glycine max HOM05D003836 ORTHO05D004556 1.4e-183 647.1 501 65.7
TAR374G0617 Trochodendron aralioides HOM05D003836 ORTHO05D004556 2.3e-183 646.4 656 56.4
Lj1g0024673 Lotus japonicus HOM05D003836 ORTHO05D004556 5.2e-183 645.2 635 57.6
GSVIVG01011621001 Vitis vinifera HOM05D003836 ORTHO05D004556 9.8e-182 641.0 656 56.7
Ca_16122_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 2.2e-181 639.8 652 54.3
Migut.E00502 Erythranthe guttata HOM05D003836 ORTHO05D004556 2.2e-181 639.8 642 57.0
Glyma.06G176300 Glycine max HOM05D003836 ORTHO05D004556 6.3e-181 638.3 655 55.7
TPR.G35600 Trifolium pratense HOM05D003836 ORTHO05D004556 8.3e-181 637.9 657 53.9
FAN17G2261 Fragaria x ananassa HOM05D003836 ORTHO05D004556 2.4e-180 636.3 628 56.5
CsaV3_7G022080 Cucumis sativus L. HOM05D003836 ORTHO05D004556 9.2e-180 634.4 670 56.1
Phvul.009G172600 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 1.6e-179 633.6 641 55.1
TAR622G1236 Trochodendron aralioides HOM05D003836 ORTHO05D004556 2.0e-179 633.3 653 54.4
FAN22G0514 Fragaria x ananassa HOM05D003836 ORTHO05D004556 2.7e-179 632.9 628 56.7
Nn4g24475 Nelumbo nucifera HOM05D003836 ORTHO05D004556 3.5e-179 632.5 498 67.1
Gohir.D13G026700 Gossypium hirsutum HOM05D003836 ORTHO05D004556 7.7e-179 631.3 556 61.9
FAN12G1258 Fragaria x ananassa HOM05D003836 ORTHO05D004556 1.7e-178 630.2 628 56.1
Thecc.02G307000 Theobroma cacao HOM05D003836 ORTHO05D004556 1.7e-178 630.2 631 57.8
PSO063G7099 Papaver somniferum HOM05D003836 ORTHO05D004556 2.3e-178 629.8 496 63.5
FAN07G2679 Fragaria x ananassa HOM05D003836 ORTHO05D004556 2.9e-178 629.4 632 55.7
PSO782G5172 Papaver somniferum HOM05D003836 ORTHO05D004556 2.9e-178 629.4 628 55.7
RcHm_v2.0_Chr4g0442391 Rosa chinensis HOM05D003836 ORTHO05D004556 5.0e-178 628.6 634 55.2
QL03p038287 Quercus lobata HOM05D003836 ORTHO05D004556 1.5e-177 627.1 705 52.3
MD16G1015700 Malus domestica HOM05D003836 ORTHO05D004556 1.6e-176 623.6 636 56.1
Lalb_Chr11g0070001 Lupinus albus HOM05D003836 ORTHO05D004556 2.8e-176 622.9 647 54.1
Medtr3g076570 Medicago truncatula HOM05D003836 ORTHO05D004556 3.6e-176 622.5 642 54.5
ClCG11G007570 Citrullus lanatus HOM05D003836 ORTHO05D004556 8.0e-176 621.3 670 55.1
VMungo1309G0617 Vigna mungo HOM05D003836 ORTHO05D004556 2.3e-175 619.8 502 64.3
PGR142G3191 Punica granatum HOM05D003836 ORTHO05D004556 2.6e-174 616.3 641 56.5
Sed0017171 Sechium edule HOM05D003836 ORTHO05D004556 5.7e-174 615.1 500 65.6
Prupe.1G335900 Prunus persica HOM05D003836 ORTHO05D004556 2.2e-173 613.2 635 55.7
Eucgr.G02079 Eucalyptus grandis HOM05D003836 ORTHO05D004556 2.9e-173 612.8 654 55.0
Haze_10840 Corylus avellana HOM05D003836 ORTHO05D004556 4.9e-173 612.1 669 53.7
Sabra10G0076000 Salix brachista HOM05D003836 ORTHO05D004556 9.2e-172 607.8 654 54.6
Duzib251G0897 Durio zibethinus HOM05D003836 ORTHO05D004556 2.3e-170 603.2 625 57.3
Nn3g18432 Nelumbo nucifera HOM05D003836 ORTHO05D004556 3.9e-170 602.4 497 63.0
Hma1.2p1_2859F.1_g329510 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 2.3e-167 593.2 398 72.9
Dinv02294 Davidia involucrata HOM05D003836 ORTHO05D004556 5.2e-167 592.0 438 68.5
Dinv32673 Davidia involucrata HOM05D003836 ORTHO05D004556 1.5e-166 590.5 659 53.4
arahy.Tifrunner.gnm1.ann1.FHB42U Arachis hypogaea HOM05D003836 ORTHO05D004556 2.6e-166 589.7 660 51.4
arahy.Tifrunner.gnm1.ann1.THT645 Arachis hypogaea HOM05D003836 ORTHO05D004556 3.4e-166 589.3 665 51.0
Duzib268G0198 Durio zibethinus HOM05D003836 ORTHO05D004556 3.4e-166 589.3 631 55.0
arahy.Tifrunner.gnm1.ann1.HCE13Z Arachis hypogaea HOM05D003836 ORTHO05D004556 7.5e-166 588.2 644 51.7
Gohir.A12G154400 Gossypium hirsutum HOM05D003836 ORTHO05D004556 1.3e-165 587.4 563 59.0
Gohir.D12G157600 Gossypium hirsutum HOM05D003836 ORTHO05D004556 5.4e-164 582.0 563 59.5
Atru.chr11.806 Acer truncatum HOM05D003836 ORTHO05D004556 2.7e-163 579.7 397 73.0
Psat5g116920 Pisum sativum HOM05D003836 ORTHO05D004556 2.7e-163 579.7 617 53.0
COL.COLO4_27608 Corchorus olitorius HOM05D003836 ORTHO05D004556 4.6e-163 578.9 568 60.2
MELO3C013236.2 Cucumis melo HOM05D003836 ORTHO05D004556 1.7e-162 577.0 657 51.4
Glyma.07G191900 Glycine max HOM05D003836 ORTHO05D004556 2.1e-160 570.1 504 60.1
Cpa.g.sc2.157 Carica papaya HOM05D003836 ORTHO05D004556 3.6e-160 569.3 586 56.8
Cc11_g06410 Coffea canephora HOM05D003836 ORTHO05D004556 4.7e-160 568.9 653 51.1
ECA246G1487 Erigeron canadensis HOM05D003836 ORTHO05D004556 1.5e-158 563.9 628 54.3
Lsat_1_v5_gn_3_104360 Lactuca sativa HOM05D003836 ORTHO05D004556 2.4e-156 556.6 630 52.4
Ah.02g131240 Amaranthus hybridus HOM05D003836 ORTHO05D004556 8.6e-154 548.1 420 66.0
SalBow2G2298 Salvia bowleyana HOM05D003836 ORTHO05D004556 1.5e-153 547.4 657 48.7
EL10Ac8g19453 Beta vulgaris HOM05D003836 ORTHO05D004556 1.6e-152 543.9 693 48.2
ATR0021G013 Amborella trichopoda HOM05D003836 ORTHO05D004556 5.2e-151 538.9 642 49.8
Zm00001eb216180 Zea mays HOM05D003836 ORTHO05D004556 5.8e-150 535.4 615 48.6
DCAR_023556 Daucus carota HOM05D003836 ORTHO05D004556 9.9e-150 534.6 636 49.2
TPR.G32436 Trifolium pratense HOM05D003836 ORTHO05D004556 6.0e-147 525.4 399 65.4
Glyma.13G184600 Glycine max HOM05D003836 ORTHO05D004556 2.8e-144 516.5 487 57.5
SGA_v2.0_scaffold23G10153 Striga asiatica HOM05D003836 ORTHO05D004556 5.1e-138 495.7 615 48.8
VMungo0251G2034 Vigna mungo HOM05D003836 ORTHO05D004556 2.1e-136 490.3 410 61.7
Psat7g111040 Pisum sativum HOM05D003836 ORTHO05D004556 4.8e-136 489.2 365 67.4
unitig_8.g4015 Utricularia gibba HOM05D003836 ORTHO05D004556 5.8e-134 482.3 636 47.0
arahy.Tifrunner.gnm1.ann1.36Q8NS Arachis hypogaea HOM05D003836 ORTHO05D004556 5.6e-129 465.7 647 44.7
Pp3c12_1050 Physcomitrium patens HOM05D003836 ORTHO05D004556 2.9e-125 453.4 425 52.9
Phvul.002G223900 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 1.6e-123 447.6 431 56.1
arahy.Tifrunner.gnm1.ann1.6NWB5V Arachis hypogaea HOM05D003836 ORTHO05D004556 2.1e-123 447.2 503 51.7
Os03g0715400 Oryza sativa ssp. japonica HOM05D003836 ORTHO05D004556 1.3e-120 438.0 536 48.3
Lj6A734G74 Lonicera japonica HOM05D003836 ORTHO05D004556 1.8e-119 434.1 637 42.1
Medtr4g090465 Medicago truncatula HOM05D003836 ORTHO05D004556 4.5e-118 429.5 372 58.9
Mapoly0019s0007 Marchantia polymorpha HOM05D003836 ORTHO05D004556 1.2e-115 421.4 505 45.3
Solyc06g051440.4 Solanum lycopersicum HOM05D003836 ORTHO05D004556 3.8e-109 399.8 291 69.1
Nitab4.5_0001516g0010 Nicotiana tabacum HOM05D003836 ORTHO05D004556 2.1e-107 394.0 765 37.5
SHI04351 Sapria himalayana HOM05D003836 ORTHO05D004556 8.7e-106 388.7 353 58.9
Lalb_Chr23g0273371 Lupinus albus HOM05D003836 ORTHO05D004556 4.5e-102 376.3 472 47.9
arahy.Tifrunner.gnm1.ann1.0AB4R7 Arachis hypogaea HOM05D003836 ORTHO05D004556 1.2e-99 368.2 503 47.5
Oeu036124.4 Olea europaea HOM05D003836 ORTHO05D004556 8.2e-96 355.5 275 66.2
AUR62033051 Chenopodium quinoa HOM05D003836 ORTHO05D004556 9.1e-95 352.1 565 43.4
AagrBONN_evm.TU.Sc2ySwM_228.1822 Anthoceros agrestis HOM05D003836 ORTHO05D004556 1.8e-87 327.8 339 48.7
SMO358G0292 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 1.9e-84 317.8 465 41.3
C01p04020 Brassica napus HOM05D003836 ORTHO05D004556 6.1e-83 312.8 172 89.0
Sc10g0004880 Simmondsia chinensis HOM05D003836 ORTHO05D004556 1.3e-80 305.1 198 74.7
BcaC08g46015 Brassica carinata HOM05D003836 ORTHO05D004556 4.5e-78 296.6 188 84.0
Nitab4.5_0001227g0030 Nicotiana tabacum HOM05D003836 ORTHO05D004556 7.7e-78 295.8 637 36.3
Sopen06g017410 Solanum pennellii HOM05D003836 ORTHO05D004556 6.5e-77 292.7 418 45.2
MD13G1017500 Malus domestica HOM05D003836 ORTHO05D004556 4.2e-76 290.0 429 43.8
Peaxi162Scf00825g00424 Petunia axillaris HOM05D003836 ORTHO05D004556 5.2e-74 283.1 417 43.9
Sc10g0004870 Simmondsia chinensis HOM05D003836 ORTHO05D004556 2.0e-70 271.2 413 44.6
HanXRQChr15g0473551 Helianthus annuus HOM05D003836 ORTHO05D004556 2.1e-67 261.2 211 61.1
MBI11_g36366_MAGBIO Magnolia biondii HOM05D003836 ORTHO05D004556 3.0e-66 257.3 230 54.8
Lalb_Chr23g0273381 Lupinus albus HOM05D003836 ORTHO05D004556 6.8e-66 256.1 170 71.8
CSS0006660 Camellia sinensis var. sinensis HOM05D003836 ORTHO05D004556 1.2e-65 255.4 167 73.1
HanXRQChr15g0473541 Helianthus annuus HOM05D003836 ORTHO05D004556 3.5e-62 243.8 167 70.1
AUR62042201 Chenopodium quinoa HOM05D003836 ORTHO05D004556 7.3e-60 236.1 256 51.6
DCAR_030293 Daucus carota HOM05D003836 ORTHO05D004556 1.6e-59 235.0 345 40.0
Peaxi162Scf00825g00423 Petunia axillaris HOM05D003836 ORTHO05D004556 1.0e-58 232.3 165 67.3
Hma1.2p1_1450F.1_g284160 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 1.8e-50 204.9 347 39.2
MD13G1017700 Malus domestica HOM05D003836 ORTHO05D004556 8.9e-50 202.6 125 76.0
PRCOL_00001721 Prasinoderma coloniale HOM05D003836 ORTHO05D004556 6.4e-48 196.4 412 35.2
C06p38100 Brassica napus HOM05D003836 ORTHO05D004556 1.2e-43 182.2 239 48.1
BolC6t38907H Brassica oleracea HOM05D003836 ORTHO05D004556 1.2e-43 182.2 239 48.1
Gorai.013G150200 Gossypium raimondii HOM05D003836 ORTHO05D004556 2.1e-43 181.4 126 67.5
MCO03G489 Micromonas commoda HOM05D003836 ORTHO05D004556 5.2e-42 176.8 384 31.8
Nn8g39028 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.2e-38 165.6 136 65.4
Ca_18504_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 1.6e-38 165.2 179 54.7
arahy.Tifrunner.gnm1.ann1.I9RBIQ Arachis hypogaea HOM05D003836 ORTHO05D004556 1.6e-35 155.2 178 51.7
Nn6g35439 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.6e-35 155.2 144 61.1
Hma1.2p1_0658F.1_g197210 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 2.8e-35 154.5 349 39.5
Nn6g35150 Nelumbo nucifera HOM05D003836 ORTHO05D004556 5.2e-34 150.2 119 66.4
Gohir.D13G133800 Gossypium hirsutum HOM05D003836 ORTHO05D004556 2.0e-33 148.3 126 57.1
CAN.G2032.2 Capsicum annuum HOM05D003836 ORTHO05D004556 7.1e-31 139.8 171 45.0
Cre02.g091000 Chlamydomonas reinhardtii HOM05D003836 ORTHO05D004556 8.7e-29 132.9 319 27.3
HPP92_020596 Vanilla planifolia HOM05D003836 ORTHO05D004556 4.3e-28 130.6 307 36.2
arahy.Tifrunner.gnm1.ann1.MA62LX Arachis hypogaea HOM05D003836 ORTHO05D004556 1.1e-23 115.9 88 62.5
Cfa025144 Carpinus fangiana HOM05D003836 ORTHO05D004556 2.7e-22 111.3 304 31.2
Cpa.g.sc2.159 Carica papaya HOM05D003836 ORTHO05D004556 7.8e-22 109.8 70 75.7
Hund15725 Selenicereus undatus HOM05D003836 ORTHO05D004556 1.7e-21 108.6 77 63.6
RcHm_v2.0_Chr2g0114371 Rosa chinensis HOM05D003836 ORTHO05D004556 1.1e-20 105.9 68 79.4
arahy.Tifrunner.gnm1.ann1.ANFG2H Arachis hypogaea HOM05D003836 ORTHO05D004556 3.3e-20 104.4 93 58.1
TPR.G24606 Trifolium pratense HOM05D003836 ORTHO05D004556 1.6e-19 102.1 70 70.0
Oeu043972.2 Olea europaea HOM05D003836 ORTHO05D004556 6.2e-19 100.1 177 39.0
arahy.Tifrunner.gnm1.ann1.2AK3X2 Arachis hypogaea HOM05D003836 ORTHO05D004556 1.2e-17 95.9 92 55.4
arahy.Tifrunner.gnm1.ann1.62N7D7 Arachis hypogaea HOM05D003836 ORTHO05D004556 1.2e-17 95.9 92 55.4
arahy.Tifrunner.gnm1.ann1.6IM5NS Arachis hypogaea HOM05D003836 ORTHO05D004556 1.2e-17 95.9 92 55.4
arahy.Tifrunner.gnm1.ann1.QY8RSF Arachis hypogaea HOM05D003836 ORTHO05D004556 1.2e-17 95.9 92 55.4
arahy.Tifrunner.gnm1.ann1.XXVP91 Arachis hypogaea HOM05D003836 ORTHO05D004556 7.6e-17 93.2 83 59.0
arahy.Tifrunner.gnm1.ann1.1LH17Q Arachis hypogaea HOM05D003836 ORTHO05D004556 9.9e-17 92.8 83 59.0
SEGI_35804 Sequoiadendron giganteum HOM05D003836 ORTHO05D004556 2.4e-15 88.2 147 38.1
Gohir.D06G130832 Gossypium hirsutum HOM05D005098 ORTHO05D004556 4.2e-15 87.4 82 56.1
Gorai.010G152700 Gossypium raimondii HOM05D003836 ORTHO05D004556 1.0e-13 82.8 54 72.2
SMO278G0031 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 3.9e-13 80.9 147 38.8
Nn6g35438 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.9e-12 78.6 51 82.4
SMO200G0209 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 6.2e-11 73.6 81 45.7
SHI04354 Sapria himalayana HOM05D003836 ORTHO05D004556 4.0e-10 70.9 47 61.7
Ca_18505_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 9.0e-10 69.7 47 61.7
arahy.Tifrunner.gnm1.ann1.45U5GW Arachis hypogaea HOM05D003836 ORTHO05D011406 1.2e-09 69.3 52 69.2
arahy.Tifrunner.gnm1.ann1.UYUS3H Arachis hypogaea HOM05D003836 ORTHO05D019773 2.0e-09 68.6 52 69.2
CAN.G17.4 Capsicum annuum HOM05D003836 ORTHO05D004556 1.3e-08 65.9 226 29.6
RcHm_v2.0_Chr4g0390701 Rosa chinensis HOM05D003836 ORTHO05D004556 2.9e-08 64.7 39 71.8
Zm00001eb237940 Zea mays HOM05D003836 ORTHO05D004556 4.9e-08 63.9 44 54.5
Zm00001eb410650 Zea mays HOM05D003836 ORTHO05D004556 4.9e-08 63.9 44 54.5
arahy.Tifrunner.gnm1.ann1.X5KGN6 Arachis hypogaea HOM05D003836 ORTHO05D004556 6.4e-08 63.5 252 28.6
Zm00001eb175210 Zea mays HOM05D003836 ORTHO05D004556 1.4e-07 62.4 44 52.3
RcHm_v2.0_Chr6g0287871 Rosa chinensis HOM05D003836 ORTHO05D004556 2.1e-06 58.5 39 74.4
arahy.Tifrunner.gnm1.ann1.70DEUR Arachis hypogaea HOM05D000602 ORTHO05D004556 3.5e-06 57.8 36 66.7
arahy.Tifrunner.gnm1.ann1.JZ224H Arachis hypogaea HOM05D022818 ORTHO05D000304 7.9e-06 56.6 40 70.0


User provided reference genes

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