Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 1.4e-292 1008.8 480 100.0
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 1.3e-274 949.1 477 93.5
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 1.1e-273 946.0 477 93.3
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 7.1e-273 943.3 477 92.7
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 7.8e-272 939.9 476 93.1
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 1.1e-268 929.5 481 91.3
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 2.4e-268 928.3 481 91.1
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 2.6e-267 924.9 481 91.1
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 1.3e-266 922.5 481 90.4
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 1.3e-263 912.5 516 85.1
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 2.4e-257 891.7 486 86.2
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 1.3e-250 869.4 480 87.1
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 4.2e-241 837.8 475 82.3
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 1.6e-237 825.9 476 80.9
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 2.8e-237 825.1 475 80.4
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 8.4e-234 813.5 474 78.7
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 8.4e-234 813.5 475 80.2
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 4.6e-232 807.7 475 79.2
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 5.1e-231 804.3 475 78.1
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 1.5e-230 802.7 477 78.8
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 2.2e-229 798.9 475 78.1
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 6.3e-229 797.3 477 78.2
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 1.1e-228 796.6 472 79.2
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 1.3e-226 789.6 506 73.9
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 3.1e-220 768.5 471 74.9
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 9.1e-220 766.9 471 75.2
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 3.4e-219 765.0 471 75.4
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 7.7e-219 763.8 471 74.9
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 1.0e-218 763.5 471 74.9
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 1.7e-218 762.7 471 74.7
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 5.0e-218 761.1 472 73.7
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 9.4e-217 756.9 471 73.9
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 1.4e-215 753.1 474 73.6
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 8.8e-215 750.4 471 71.5
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 1.5e-214 749.6 471 71.5
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 2.6e-214 748.8 471 73.0
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 5.7e-214 747.7 471 73.9
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 1.3e-213 746.5 471 72.2
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 1.7e-213 746.1 471 73.2
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 8.2e-213 743.8 471 71.8
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 1.4e-212 743.0 471 72.6
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 7.0e-212 740.7 471 72.2
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 7.0e-212 740.7 471 71.5
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 7.0e-212 740.7 471 72.0
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 9.1e-212 740.3 472 72.2
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 1.2e-211 740.0 472 71.8
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 2.6e-211 738.8 472 71.8
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 3.5e-211 738.4 471 71.5
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 4.5e-211 738.0 472 71.0
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 1.0e-210 736.9 471 73.0
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 1.3e-210 736.5 472 71.6
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 2.2e-210 735.7 471 71.1
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 8.5e-210 733.8 471 73.2
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 4.2e-209 731.5 470 71.3
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 4.2e-209 731.5 471 71.3
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 1.2e-208 729.9 471 71.1
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 2.1e-208 729.2 471 70.7
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 2.1e-208 729.2 471 70.9
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 1.4e-207 726.5 471 70.9
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 1.8e-207 726.1 471 70.3
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 3.9e-207 724.9 471 70.1
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 1.1e-206 723.4 471 70.5
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 1.5e-206 723.0 471 71.1
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 4.4e-206 721.5 427 78.2
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 7.4e-206 720.7 473 71.0
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 7.4e-206 720.7 471 69.9
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 1.7e-205 719.5 471 70.3
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 4.8e-205 718.0 471 69.6
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 4.8e-205 718.0 471 70.1
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 6.3e-205 717.6 465 71.2
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 1.1e-204 716.8 472 71.2
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 1.1e-204 716.8 505 67.3
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 1.4e-204 716.5 472 71.2
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 2.4e-204 715.7 471 69.9
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 3.1e-204 715.3 469 70.4
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 3.1e-204 715.3 469 70.4
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 5.9e-203 711.1 471 69.9
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 1.0e-202 710.3 471 68.8
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 5.0e-202 708.0 471 69.4
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 2.5e-201 705.7 471 68.6
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 3.2e-201 705.3 466 70.2
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 3.2e-201 705.3 466 70.2
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 5.5e-201 704.5 473 67.4
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 1.2e-200 703.4 469 69.9
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 1.6e-200 703.0 474 68.4
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 2.1e-200 702.6 444 72.1
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 4.7e-200 701.4 473 68.1
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 8.0e-200 700.7 476 68.7
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 1.0e-199 700.3 471 68.6
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 1.8e-199 699.5 474 67.9
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 1.8e-199 699.5 465 70.5
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 1.2e-198 696.8 448 71.2
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 1.5e-198 696.4 471 68.4
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 3.4e-198 695.3 474 68.1
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 1.3e-197 693.3 481 67.2
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 9.1e-196 687.2 432 73.4
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 5.0e-194 681.4 475 65.9
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 8.5e-194 680.6 431 72.4
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 1.5e-193 679.9 471 66.2
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 1.6e-192 676.4 469 65.5
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 1.6e-192 676.4 476 64.3
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 2.1e-192 676.0 437 70.9
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 2.7e-192 675.6 437 70.9
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 3.6e-192 675.2 439 70.6
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 4.7e-192 674.9 468 67.9
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 6.1e-192 674.5 471 65.0
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 4.0e-191 671.8 473 65.1
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 9.8e-190 667.2 475 64.4
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 2.8e-189 665.6 438 69.6
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 6.3e-189 664.5 477 63.1
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 2.7e-187 659.1 492 64.2
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 8.9e-183 644.0 473 63.0
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 3.7e-181 638.6 474 63.7
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.3e-178 630.2 430 66.5
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 1.6e-176 623.2 514 58.9
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 2.0e-174 616.3 458 64.0
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 2.2e-173 612.8 472 62.9
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 3.5e-171 605.5 473 60.9
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 2.1e-168 596.3 474 62.4
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 2.2e-165 586.3 471 59.7
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 2.4e-164 582.8 427 64.2
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 3.2e-164 582.4 501 56.1
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 3.0e-162 575.9 509 57.2
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 3.3e-161 572.4 473 57.5
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 1.2e-160 570.5 498 58.6
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 3.4e-158 562.4 483 57.1
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 5.8e-158 561.6 487 55.2
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 7.6e-158 561.2 387 68.7
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 3.2e-156 555.8 469 55.4
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 8.6e-154 547.7 470 54.0
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 2.0e-150 536.6 474 57.6
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 9.0e-135 484.6 438 57.5
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 2.6e-126 456.4 372 57.5
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 1.1e-121 441.0 321 62.9
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 2.5e-121 439.9 507 44.6
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 5.0e-117 425.6 270 73.0
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 6.7e-114 415.2 270 71.5
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 1.1e-84 318.2 243 60.9
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 2.7e-83 313.5 218 66.1
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 2.6e-81 307.0 481 36.4
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 2.6e-81 307.0 202 65.8
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 1.1e-71 275.0 189 64.0
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 4.3e-68 263.1 202 61.9
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 1.7e-64 251.1 295 47.8
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 1.3e-53 214.9 149 65.1
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 7.3e-52 209.1 150 66.0
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 7.5e-49 199.1 137 66.4
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 9.8e-49 198.7 101 83.2
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 6.4e-40 169.5 99 77.8
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 5.1e-37 159.8 194 44.3
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 2.5e-28 131.0 81 71.6
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 9.0e-26 122.5 87 69.0
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 1.7e-21 108.2 70 72.9
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 1.3e-19 102.1 83 57.8
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 1.3e-19 102.1 66 63.6
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 1.8e-18 98.2 95 54.7
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 2.1e-14 84.7 99 48.5
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 3.5e-14 84.0 60 65.0
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 5.1e-13 80.1 45 73.3
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 6.7e-13 79.7 39 87.2
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 8.1e-11 72.8 44 72.7
Psat3g154560 Pisum sativum HOM05D001399 ORTHO05D001670 6.5e-08 63.2 55 49.1


User provided reference genes

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