Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR055600 Cardamine hirsuta HOM05D006377 ORTHO05D008001 9.1e-110 400.2 197 100.0
AL1G64910 Arabidopsis lyrata HOM05D006377 ORTHO05D008001 8.3e-95 350.5 197 88.3
AT1G54500 Arabidopsis thaliana HOM05D006377 ORTHO05D008001 8.3e-95 350.5 197 88.3
Carub.0002s0934 Capsella rubella HOM05D006377 ORTHO05D008001 1.7e-87 326.2 202 82.7
SpUn0001_0720 Schrenkiella parvula HOM05D006377 ORTHO05D008001 3.3e-83 312.0 200 83.0
Thhalv10023702m.g Eutrema salsugineum HOM05D006377 ORTHO05D008001 5.2e-81 304.7 202 80.2
Aa31LG2G12300 Aethionema arabicum HOM05D006377 ORTHO05D008001 2.6e-72 275.8 197 75.1
BcaB02g08603 Brassica carinata HOM05D006377 ORTHO05D008001 3.4e-72 275.4 198 77.3
A04p07500 Brassica napus HOM05D006377 ORTHO05D008001 1.1e-70 270.4 202 74.8
BcaC02g09303 Brassica carinata HOM05D006377 ORTHO05D008001 1.9e-70 269.6 201 74.6
C04p41160 Brassica napus HOM05D006377 ORTHO05D008001 1.2e-69 266.9 199 73.9
BolC4t25698H Brassica oleracea HOM05D006377 ORTHO05D008001 1.2e-69 266.9 199 73.9
BraA04t16445Z Brassica rapa HOM05D006377 ORTHO05D008001 2.7e-69 265.8 200 74.0
THA.LOC104805815 Tarenaya hassleriana HOM05D006377 ORTHO05D008001 9.3e-62 240.7 206 65.5
Gohir.D11G265800 Gossypium hirsutum HOM05D006377 ORTHO05D008001 7.6e-56 221.1 149 72.5
Potri.013G035700 Populus trichocarpa HOM05D006377 ORTHO05D008001 1.1e-54 217.2 184 64.7
FAN05G4075 Fragaria x ananassa HOM05D006377 ORTHO05D008001 1.4e-54 216.9 197 58.4
Gorai.007G285800 Gossypium raimondii HOM05D006377 ORTHO05D008001 1.4e-54 216.9 205 59.5
Gohir.A11G256100 Gossypium hirsutum HOM05D006377 ORTHO05D008001 1.9e-54 216.5 163 66.9
Ciclev10002532m.g Citrus clementina HOM05D006377 ORTHO05D008001 2.4e-54 216.1 117 84.6
Atru.chr2.718 Acer truncatum HOM05D006377 ORTHO05D008001 3.2e-54 215.7 125 80.0
Lj1g0014721 Lotus japonicus HOM05D006377 ORTHO05D008001 3.2e-54 215.7 197 59.4
FAN05G1987 Fragaria x ananassa HOM05D006377 ORTHO05D008001 4.2e-54 215.3 197 57.9
Medtr7g114590 Medicago truncatula HOM05D006377 ORTHO05D008001 5.4e-54 214.9 200 62.0
RcHm_v2.0_Chr3g0452211 Rosa chinensis HOM05D006377 ORTHO05D008001 5.4e-54 214.9 198 59.6
TPR.G7004 Trifolium pratense HOM05D006377 ORTHO05D008001 9.3e-54 214.2 197 60.4
TWI36G1766 Tripterygium wilfordii HOM05D006377 ORTHO05D008001 9.3e-54 214.2 187 62.0
Haze_04319 Corylus avellana HOM05D006377 ORTHO05D008001 1.2e-53 213.8 194 60.8
Sabra05G0044300 Salix brachista HOM05D006377 ORTHO05D008001 1.2e-53 213.8 138 76.8
FvH4_6g03680 Fragaria vesca HOM05D006377 ORTHO05D008001 1.6e-53 213.4 196 61.2
FAN14G3144 Fragaria x ananassa HOM05D006377 ORTHO05D008001 1.6e-53 213.4 196 61.2
Cpa.g.sc264.18 Carica papaya HOM05D006377 ORTHO05D008001 2.1e-53 213.0 117 82.9
VMungo0540G1412 Vigna mungo HOM05D006377 ORTHO05D008001 2.1e-53 213.0 114 86.0
Ca_09403_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 3.5e-53 212.2 178 63.5
Ca_30164_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 3.5e-53 212.2 178 63.5
Duzib177G1058 Durio zibethinus HOM05D006377 ORTHO05D008001 3.5e-53 212.2 117 82.9
Manes.08G127500 Manihot esculenta HOM05D006377 ORTHO05D008001 4.6e-53 211.8 113 86.7
TAR365G0273 Trochodendron aralioides HOM05D006377 ORTHO05D008001 4.6e-53 211.8 195 60.0
Potri.005G049000 Populus trichocarpa HOM05D006377 ORTHO05D008001 7.9e-53 211.1 195 60.0
Cfa006472 Carpinus fangiana HOM05D006377 ORTHO05D008001 1.0e-52 210.7 194 60.3
Phvul.006G099300 Phaseolus vulgaris HOM05D006377 ORTHO05D008001 1.0e-52 210.7 200 56.0
arahy.Tifrunner.gnm1.ann1.VW98FE Arachis hypogaea HOM05D006377 ORTHO05D008001 1.3e-52 210.3 119 80.7
CSS0017897 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 1.8e-52 209.9 211 58.8
Prupe.6G338600 Prunus persica HOM05D006377 ORTHO05D008001 1.8e-52 209.9 210 59.5
CSS0039444 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 3.9e-52 208.8 211 58.3
CiPaw.08G178700 Carya illinoinensis HOM05D006377 ORTHO05D008001 3.9e-52 208.8 197 58.9
FAN02G4534 Fragaria x ananassa HOM05D006377 ORTHO05D008001 3.9e-52 208.8 119 80.7
PGR004G2824 Punica granatum HOM05D006377 ORTHO05D008001 3.9e-52 208.8 126 77.8
Thecc.05G289700 Theobroma cacao HOM05D006377 ORTHO05D008001 3.9e-52 208.8 113 85.8
MD04G1219300 Malus domestica HOM05D006377 ORTHO05D008001 5.1e-52 208.4 119 79.8
Glyma.03G245100 Glycine max HOM05D006377 ORTHO05D008001 6.7e-52 208.0 176 63.1
Sed0019582 Sechium edule HOM05D006377 ORTHO05D008001 6.7e-52 208.0 159 66.0
Nn2g12517 Nelumbo nucifera HOM05D006377 ORTHO05D008001 1.1e-51 207.2 155 65.8
vmacro05068 Vaccinium macrocarpon HOM05D006377 ORTHO05D008001 1.5e-51 206.8 203 55.7
ClCG02G016370 Citrullus lanatus HOM05D006377 ORTHO05D008001 2.5e-51 206.1 138 71.7
CsaV3_2G004360 Cucumis sativus L. HOM05D006377 ORTHO05D008001 3.3e-51 205.7 138 71.7
ECA238G1597 Erigeron canadensis HOM05D006377 ORTHO05D008001 3.3e-51 205.7 201 55.7
HanXRQChr04g0094091 Helianthus annuus HOM05D006377 ORTHO05D008001 3.3e-51 205.7 196 58.7
MELO3C004358.2 Cucumis melo HOM05D006377 ORTHO05D008001 4.3e-51 205.3 138 71.7
Lalb_Chr15g0076921 Lupinus albus HOM05D006377 ORTHO05D008001 4.3e-51 205.3 141 71.6
MD12G1236300 Malus domestica HOM05D006377 ORTHO05D008001 4.3e-51 205.3 203 55.7
QL03p023964 Quercus lobata HOM05D006377 ORTHO05D008001 4.3e-51 205.3 118 80.5
Lsat_1_v5_gn_2_67840 Lactuca sativa HOM05D006377 ORTHO05D008001 5.6e-51 204.9 200 58.5
QL03p023258 Quercus lobata HOM05D006377 ORTHO05D008001 5.6e-51 204.9 136 73.5
Oeu027050.1 Olea europaea HOM05D006377 ORTHO05D008001 7.4e-51 204.5 198 57.6
Actinidia05760 Actinidia chinensis HOM05D006377 ORTHO05D008001 9.6e-51 204.1 148 68.2
Sc20g0000200 Simmondsia chinensis HOM05D006377 ORTHO05D008001 1.3e-50 203.8 206 57.3
MSTRG.3650 Avicennia marina HOM05D006377 ORTHO05D008001 1.6e-50 203.4 163 62.6
Oeu012478.1 Olea europaea HOM05D006377 ORTHO05D008001 2.1e-50 203.0 188 58.5
MBI19_g37073_MAGBIO Magnolia biondii HOM05D006377 ORTHO05D008001 3.7e-50 202.2 116 78.4
Ah.06g192660 Amaranthus hybridus HOM05D006377 ORTHO05D008001 4.8e-50 201.8 111 85.6
CAN.G134.174 Capsicum annuum HOM05D006377 ORTHO05D008001 6.2e-50 201.4 113 82.3
FAN09G4008 Fragaria x ananassa HOM05D006377 ORTHO05D008001 6.2e-50 201.4 187 57.8
EL10Ac4g09192 Beta vulgaris HOM05D006377 ORTHO05D008001 1.4e-49 200.3 139 68.3
SGA_v2.0_scaffold35G13993 Striga asiatica HOM05D006377 ORTHO05D008001 1.8e-49 199.9 134 71.6
PSO210G5336 Papaver somniferum HOM05D006377 ORTHO05D008001 4.0e-49 198.7 176 60.8
SalBow5G2979 Salvia bowleyana HOM05D006377 ORTHO05D008001 5.3e-49 198.4 122 77.0
Cc02_g31420 Coffea canephora HOM05D006377 ORTHO05D008001 6.9e-49 198.0 199 54.8
Aqoxy2G02484 Aquilegia oxysepala HOM05D006377 ORTHO05D008001 9.0e-49 197.6 119 77.3
PSO761G0064 Papaver somniferum HOM05D006377 ORTHO05D008001 9.0e-49 197.6 176 60.2
Solyc01g097910.2 Solanum lycopersicum HOM05D006377 ORTHO05D008001 9.0e-49 197.6 113 81.4
Sopen01g041500 Solanum pennellii HOM05D006377 ORTHO05D008001 9.0e-49 197.6 113 81.4
PGSC0003DMG400022504 Solanum tuberosum HOM05D006377 ORTHO05D008001 9.0e-49 197.6 113 81.4
Migut.E01572 Erythranthe guttata HOM05D006377 ORTHO05D008001 2.0e-48 196.4 200 54.5
Zm00001eb140200 Zea mays HOM05D006377 ORTHO05D008001 2.6e-48 196.1 172 56.4
Os08g0323400 Oryza sativa ssp. japonica HOM05D006377 ORTHO05D008001 5.8e-48 194.9 114 76.3
unitig_0.g1675 Utricularia gibba HOM05D006377 ORTHO05D008001 5.8e-48 194.9 145 64.1
Nitab4.5_0002361g0100 Nicotiana tabacum HOM05D006377 ORTHO05D008001 7.6e-48 194.5 210 54.8
Hma1.2p1_0332F.1_g127770 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 1.0e-47 194.1 199 54.8
Nitab4.5_0002840g0030 Nicotiana tabacum HOM05D006377 ORTHO05D008001 2.2e-47 193.0 205 54.1
Sabra13G0035000 Salix brachista HOM05D006377 ORTHO05D008001 2.9e-47 192.6 145 67.6
Rhsim07G0175800 Rhododendron simsii HOM05D006377 ORTHO05D008001 3.8e-47 192.2 206 56.8
Psat5g039080 Pisum sativum HOM05D006377 ORTHO05D008001 6.5e-47 191.4 180 59.4
Zm00001eb061720 Zea mays HOM05D006377 ORTHO05D008001 7.1e-46 188.0 114 72.8
ATR0796G227 Amborella trichopoda HOM05D006377 ORTHO05D008001 9.3e-46 187.6 155 61.3
Zm00001eb061690 Zea mays HOM05D006377 ORTHO05D008001 9.3e-46 187.6 114 72.8
Peaxi162Scf00404g00014 Petunia axillaris HOM05D006377 ORTHO05D008001 1.6e-45 186.8 191 55.5
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 2.1e-45 186.4 172 56.4
CDE12G0044 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 7.9e-45 184.5 202 51.5
HPP92_001948 Vanilla planifolia HOM05D006377 ORTHO05D008001 2.3e-44 183.0 127 70.1
Zm00001eb061700 Zea mays HOM05D006377 ORTHO05D008001 2.3e-44 183.0 171 54.4
AagrBONN_evm.TU.Sc2ySwM_368.50 Anthoceros agrestis HOM05D006377 ORTHO05D008001 3.0e-44 182.6 124 69.4
Zm00001eb061670 Zea mays HOM05D006377 ORTHO05D008001 3.9e-44 182.2 153 59.5
Lj7P475T32 Lonicera japonica HOM05D006377 ORTHO05D008001 5.1e-44 181.8 205 53.7
AagrBONN_evm.TU.Sc2ySwM_344.5347 Anthoceros agrestis HOM05D006377 ORTHO05D008001 1.1e-43 180.6 124 67.7
SEGI_38373 Sequoiadendron giganteum HOM05D006377 ORTHO05D008001 1.3e-42 177.2 139 61.9
Duzib128G0229 Durio zibethinus HOM05D006377 ORTHO05D008001 8.2e-42 174.5 135 63.0
AUR62000968 Chenopodium quinoa HOM05D006377 ORTHO05D008001 1.1e-41 174.1 96 80.2
Dinv11572 Davidia involucrata HOM05D006377 ORTHO05D008001 5.3e-41 171.8 98 78.6
Mapoly0032s0089 Marchantia polymorpha HOM05D006377 ORTHO05D008001 1.5e-40 170.2 144 57.6
Pp3c1_22450 Physcomitrium patens HOM05D006377 ORTHO05D008001 2.6e-40 169.5 109 71.6
Manes.09G157000 Manihot esculenta HOM05D006377 ORTHO05D008001 4.5e-40 168.7 88 84.1
Actinidia30919 Actinidia chinensis HOM05D006377 ORTHO05D008001 1.7e-39 166.8 178 56.2
Zm00001eb061710 Zea mays HOM05D006377 ORTHO05D008001 2.2e-39 166.4 169 50.3
SMO137G0026 Selaginella moellendorffii HOM05D006377 ORTHO05D008001 5.0e-39 165.2 108 69.4
Pp3c2_13970 Physcomitrium patens HOM05D006377 ORTHO05D008001 8.4e-39 164.5 109 69.7
AagrBONN_evm.TU.Sc2ySwM_368.3396 Anthoceros agrestis HOM05D006377 ORTHO05D008001 1.1e-38 164.1 135 58.5
CBR_g55374 Chara braunii HOM05D006377 ORTHO05D008001 2.5e-38 162.9 113 66.4
unitig_748.g7013 Utricularia gibba HOM05D000757 ORTHO05D000622 1.3e-36 157.1 96 70.8
AUR62004997 Chenopodium quinoa HOM05D006377 ORTHO05D008001 2.5e-35 152.9 78 84.6
DCAR_009137 Daucus carota HOM05D006377 ORTHO05D008001 2.5e-35 152.9 109 69.7
Cre07.g315150 Chlamydomonas reinhardtii HOM05D006377 ORTHO05D008001 1.6e-29 133.7 129 48.1
MCO15G508 Micromonas commoda HOM05D006377 ORTHO05D008001 4.6e-29 132.1 113 54.0
Zm00001eb061680 Zea mays HOM05D006377 ORTHO05D008001 3.7e-26 122.5 136 44.1
PRCOL_00004455 Prasinoderma coloniale HOM05D006377 ORTHO05D008001 2.4e-25 119.8 117 50.4
Hma1.2p1_0332F.1_g127760 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 9.1e-25 117.9 149 46.3
Hma1.2p1_0332F.1_g127740 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 5.5e-14 82.0 56 62.5


User provided reference genes

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