Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR049040 Cardamine hirsuta HOM05D005732 ORTHO05D007062 5.2e-50 200.7 97 100.0
CARHR074750 Cardamine hirsuta HOM05D005732 ORTHO05D007062 5.8e-17 90.9 46 89.1
AL2G41770 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 3.5e-14 81.6 57 71.9
Carub.0002s2773 Capsella rubella HOM05D005732 ORTHO05D007062 3.5e-14 81.6 57 71.9
Thhalv10019180m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 4.6e-14 81.3 40 92.5
Sp5g35990 Schrenkiella parvula HOM05D005732 ORTHO05D007062 1.3e-13 79.7 57 70.2
AT1G79780 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 3.9e-13 78.2 57 70.2
Aa31LG4G50 Aethionema arabicum HOM05D005732 ORTHO05D007062 1.1e-12 76.6 53 71.7
A07p26310 Brassica napus HOM05D005732 ORTHO05D007062 5.7e-12 74.3 40 82.5
C06p28700 Brassica napus HOM05D005732 ORTHO05D007062 5.7e-12 74.3 40 82.5
BolC6t38039H Brassica oleracea HOM05D005732 ORTHO05D007062 5.7e-12 74.3 40 82.5
BraA07t30275Z Brassica rapa HOM05D005732 ORTHO05D007062 5.7e-12 74.3 40 82.5
THA.LOC104813551 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 7.4e-12 73.9 40 80.0
THA.LOC104817966 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 5.3e-10 67.8 40 70.0
CANSAT56G1056 Cannabis sativa HOM05D005732 ORTHO05D007062 1.2e-09 66.6 47 63.8
QL05p020542 Quercus lobata HOM05D005732 ORTHO05D007062 1.2e-09 66.6 40 77.5
Lsat_1_v5_gn_1_34600 Lactuca sativa HOM05D005732 ORTHO05D007062 1.5e-09 66.2 62 53.2
MBI04_g40322_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 1.5e-09 66.2 40 72.5
MBI04_g44953_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 1.5e-09 66.2 40 72.5
Potri.001G188000 Populus trichocarpa HOM05D005732 ORTHO05D007062 1.5e-09 66.2 40 75.0
GSVIVG01017014001 Vitis vinifera HOM05D005732 ORTHO05D007062 1.5e-09 66.2 40 72.5
RcHm_v2.0_Chr2g0140051 Rosa chinensis HOM05D005732 ORTHO05D007062 2.0e-09 65.9 40 72.5
Sabra01G0152800 Salix brachista HOM05D005732 ORTHO05D007062 2.0e-09 65.9 40 75.0
Cfa003665 Carpinus fangiana HOM05D005732 ORTHO05D007062 3.4e-09 65.1 40 72.5
Haze_15828 Corylus avellana HOM05D005732 ORTHO05D007062 3.4e-09 65.1 40 72.5
FAN09G2308 Fragaria x ananassa HOM05D005732 ORTHO05D007062 3.4e-09 65.1 40 70.0
CSS0006657 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 4.5e-09 64.7 40 70.0
FvH4_6g32160 Fragaria vesca HOM05D005732 ORTHO05D007062 4.5e-09 64.7 40 70.0
FAN02G4216 Fragaria x ananassa HOM05D005732 ORTHO05D007062 4.5e-09 64.7 40 70.0
FAN14G0018 Fragaria x ananassa HOM05D005732 ORTHO05D007062 4.5e-09 64.7 40 70.0
Lj9C524T15 Lonicera japonica HOM05D005732 ORTHO05D007062 4.5e-09 64.7 78 46.2
Medtr8g013900 Medicago truncatula HOM05D005732 ORTHO05D007062 4.5e-09 64.7 40 70.0
Psat4g197440 Pisum sativum HOM05D005732 ORTHO05D007062 4.5e-09 64.7 40 70.0
Potri.003G050400 Populus trichocarpa HOM05D005732 ORTHO05D007062 4.5e-09 64.7 40 72.5
TWI18G0404 Tripterygium wilfordii HOM05D005732 ORTHO05D007062 4.5e-09 64.7 40 70.0
Atru.chr1.3497 Acer truncatum HOM05D005732 ORTHO05D007062 5.9e-09 64.3 40 67.5
AL3G29050 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 5.9e-09 64.3 68 47.1
CiPaw.01G232900 Carya illinoinensis HOM05D005732 ORTHO05D007062 5.9e-09 64.3 40 72.5
Ca_23241_v3 Cicer arietinum L. HOM05D005732 ORTHO05D007062 5.9e-09 64.3 40 70.0
Ciclev10026574m.g Citrus clementina HOM05D005732 ORTHO05D007062 5.9e-09 64.3 40 65.0
Dinv37994 Davidia involucrata HOM05D005732 ORTHO05D007062 5.9e-09 64.3 40 70.0
FAN05G5290 Fragaria x ananassa HOM05D005732 ORTHO05D007062 5.9e-09 64.3 40 70.0
Sp3g14670 Schrenkiella parvula HOM05D005732 ORTHO05D007062 5.9e-09 64.3 43 65.1
AT3G16300 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 7.6e-09 63.9 43 62.8
BcaB04g18894 Brassica carinata HOM05D005732 ORTHO05D007062 7.6e-09 63.9 43 62.8
BcaB06g25723 Brassica carinata HOM05D005732 ORTHO05D007062 7.6e-09 63.9 43 62.8
Glyma.07G017000 Glycine max HOM05D005732 ORTHO05D007062 7.6e-09 63.9 40 70.0
Lalb_Chr04g0262901 Lupinus albus HOM05D005732 ORTHO05D007062 7.6e-09 63.9 40 70.0
Sc15g0001950 Simmondsia chinensis HOM05D005732 ORTHO05D007062 7.6e-09 63.9 40 70.0
Thecc.06G097400 Theobroma cacao HOM05D005732 ORTHO05D007062 7.6e-09 63.9 40 70.0
TWI75G0681 Tripterygium wilfordii HOM05D005732 ORTHO05D007062 7.6e-09 63.9 47 61.7
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 1.0e-08 63.5 40 65.0
BcaC05g28895 Brassica carinata HOM05D005732 ORTHO05D007062 1.0e-08 63.5 40 65.0
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 1.0e-08 63.5 40 65.0
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 1.0e-08 63.5 40 65.0
BraA05t22147Z Brassica rapa HOM05D005732 ORTHO05D007062 1.0e-08 63.5 40 65.0
PSO173G0088 Papaver somniferum HOM05D005732 ORTHO05D007062 1.0e-08 63.5 40 70.0
PSO832G1217 Papaver somniferum HOM05D005732 ORTHO05D007062 1.0e-08 63.5 40 70.0
Sabra03G0028400 Salix brachista HOM05D005732 ORTHO05D007062 1.0e-08 63.5 40 70.0
unitig_46.g18459 Utricularia gibba HOM05D005732 ORTHO05D007062 1.0e-08 63.5 48 62.5
Carub.0003s1605 Capsella rubella HOM05D005732 ORTHO05D007062 1.3e-08 63.2 43 62.8
ECA247G0174 Erigeron canadensis HOM05D005732 ORTHO05D007062 1.3e-08 63.2 67 47.8
Lsat_1_v5_gn_4_99921 Lactuca sativa HOM05D005732 ORTHO05D007062 1.3e-08 63.2 40 70.0
Lj3g0008110 Lotus japonicus HOM05D005732 ORTHO05D007062 1.3e-08 63.2 73 49.3
MD09G1205900 Malus domestica HOM05D005732 ORTHO05D007062 1.3e-08 63.2 40 72.5
Phvul.010G146500 Phaseolus vulgaris HOM05D005732 ORTHO05D007062 1.3e-08 63.2 40 70.0
Rhsim12G0202300 Rhododendron simsii HOM05D005732 ORTHO05D007062 1.3e-08 63.2 53 54.7
TAR626G0582 Trochodendron aralioides HOM05D005732 ORTHO05D007062 1.3e-08 63.2 40 67.5
VMungo0331G0354 Vigna mungo HOM05D005732 ORTHO05D007062 1.3e-08 63.2 40 70.0
Actinidia09002 Actinidia chinensis HOM05D005732 ORTHO05D007062 1.7e-08 62.8 47 61.7
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 1.7e-08 62.8 43 67.4
CSS0002541 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 1.7e-08 62.8 40 70.0
CSS0032474 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 1.7e-08 62.8 40 70.0
Cpa.g.c29422 Carica papaya HOM05D005732 ORTHO05D007062 1.7e-08 62.8 40 70.0
COL.COLO4_30485 Corchorus olitorius HOM05D000181 ORTHO05D008575 1.7e-08 62.8 40 67.5
PGR102G2433 Punica granatum HOM05D005732 ORTHO05D007062 1.7e-08 62.8 40 70.0
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 1.7e-08 62.8 47 59.6
AUR62022181 Chenopodium quinoa HOM05D005732 ORTHO05D007062 2.2e-08 62.4 40 67.5
Duzib192G0605 Durio zibethinus HOM05D005732 ORTHO05D007062 2.2e-08 62.4 39 69.2
Eucgr.F03064 Eucalyptus grandis HOM05D005732 ORTHO05D007062 2.2e-08 62.4 40 70.0
Thhalv10021518m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 2.2e-08 62.4 47 59.6
Gohir.A02G118700 Gossypium hirsutum HOM05D005732 ORTHO05D007062 2.2e-08 62.4 40 67.5
Gohir.D03G059300 Gossypium hirsutum HOM05D005732 ORTHO05D007062 2.2e-08 62.4 40 67.5
Gorai.003G063300 Gossypium raimondii HOM05D005732 ORTHO05D007062 2.2e-08 62.4 40 67.5
Manes.04G132400 Manihot esculenta HOM05D005732 ORTHO05D007062 2.2e-08 62.4 40 67.5
Aqoxy7G01470 Aquilegia oxysepala HOM05D005732 ORTHO05D007062 2.9e-08 62.0 40 67.5
Cc04_g02710 Coffea canephora HOM05D005732 ORTHO05D007062 2.9e-08 62.0 40 67.5
Nn2g11615 Nelumbo nucifera HOM05D005732 ORTHO05D007062 2.9e-08 62.0 40 70.0
arahy.Tifrunner.gnm1.ann1.U1FWF5 Arachis hypogaea HOM05D005732 ORTHO05D007062 3.8e-08 61.6 40 67.5
arahy.Tifrunner.gnm1.ann1.Z2G3LM Arachis hypogaea HOM05D005732 ORTHO05D007062 3.8e-08 61.6 40 67.5
HanXRQChr02g0032191 Helianthus annuus HOM05D005732 ORTHO05D007062 3.8e-08 61.6 62 50.0
HanXRQChr09g0275891 Helianthus annuus HOM05D005732 ORTHO05D007062 3.8e-08 61.6 40 67.5
Lj5A55G45 Lonicera japonica HOM05D005732 ORTHO05D007062 3.8e-08 61.6 40 67.5
Lj9A511T51 Lonicera japonica HOM05D005732 ORTHO05D007062 3.8e-08 61.6 41 63.4
EL10Ac9g22102 Beta vulgaris HOM05D005732 ORTHO05D007062 5.0e-08 61.2 40 65.0
AUR62031884 Chenopodium quinoa HOM05D005732 ORTHO05D007062 5.0e-08 61.2 40 67.5
Hma1.2p1_1689F.1_g297591 Hydrangea macrophylla HOM05D005732 ORTHO05D007062 5.0e-08 61.2 40 67.5
CARHR091510 Cardamine hirsuta HOM05D005732 ORTHO05D007062 6.5e-08 60.8 47 57.4
DCAR_026348 Daucus carota HOM05D005732 ORTHO05D007062 6.5e-08 60.8 40 67.5
MSTRG.11037 Avicennia marina HOM05D005732 ORTHO05D007062 8.5e-08 60.5 40 67.5
A03p39750 Brassica napus HOM05D005732 ORTHO05D007062 8.5e-08 60.5 43 60.5
vmacro16985 Vaccinium macrocarpon HOM05D005732 ORTHO05D007062 8.5e-08 60.5 40 65.0
BolC3t17024H Brassica oleracea HOM05D005732 ORTHO05D007062 1.1e-07 60.1 43 58.1
CiPaw.02G147000 Carya illinoinensis HOM05D005732 ORTHO05D007062 1.1e-07 60.1 40 67.5
Migut.I00910 Erythranthe guttata HOM05D005732 ORTHO05D007062 1.4e-07 59.7 40 65.0
Os01g0725400 Oryza sativa ssp. japonica HOM05D005732 ORTHO05D007062 1.4e-07 59.7 40 65.0
BcaC01g03830 Brassica carinata HOM05D005732 ORTHO05D007062 1.9e-07 59.3 43 55.8
C03p48190 Brassica napus HOM05D005732 ORTHO05D007062 1.9e-07 59.3 43 55.8
BolC3t17097H Brassica oleracea HOM05D005732 ORTHO05D007062 1.9e-07 59.3 43 55.8
Prupe.3G061300 Prunus persica HOM05D005732 ORTHO05D007062 1.9e-07 59.3 40 67.5
DCAR_016197 Daucus carota HOM05D005732 ORTHO05D007062 2.5e-07 58.9 40 62.5
MSTRG.22648 Avicennia marina HOM05D005732 ORTHO05D007062 3.2e-07 58.5 40 65.0
BraA03t13125Z Brassica rapa HOM05D005732 ORTHO05D007062 3.2e-07 58.5 43 58.1
ECA232G1272 Erigeron canadensis HOM05D000181 ORTHO05D008575 3.2e-07 58.5 40 65.0
SalBow1G6954 Salvia bowleyana HOM05D005732 ORTHO05D007062 3.2e-07 58.5 40 62.5
SalBow2G2342 Salvia bowleyana HOM05D005732 ORTHO05D007062 3.2e-07 58.5 40 62.5
TAR383G0371 Trochodendron aralioides HOM05D005732 ORTHO05D007062 3.2e-07 58.5 40 65.0
HanXRQChr16g0501231 Helianthus annuus HOM05D005732 ORTHO05D007062 4.2e-07 58.2 40 62.5
Oeu050609.1 Olea europaea HOM05D005732 ORTHO05D007062 4.2e-07 58.2 47 55.3
Hund06653 Selenicereus undatus HOM05D005732 ORTHO05D007062 4.2e-07 58.2 40 65.0
Manes.11G035100 Manihot esculenta HOM05D005732 ORTHO05D007062 5.5e-07 57.8 40 65.0
TPR.G35018 Trifolium pratense HOM05D005732 ORTHO05D007062 1.2e-06 56.6 40 62.5
MELO3C024451.2 Cucumis melo HOM05D005732 ORTHO05D007062 2.1e-06 55.8 36 63.9
ClCG09G000040 Citrullus lanatus HOM05D005732 ORTHO05D007062 2.7e-06 55.5 37 62.2
CsaV3_7G035420 Cucumis sativus L. HOM05D005732 ORTHO05D007062 6.1e-06 54.3 36 61.1
Sed0001710 Sechium edule HOM05D005732 ORTHO05D007062 7.9e-06 53.9 36 61.1


User provided reference genes

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