Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 0.0e+00 1439.5 772 100.0
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 0.0e+00 1365.9 772 93.7
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 0.0e+00 1360.5 773 94.7
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 0.0e+00 1355.5 773 92.9
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 0.0e+00 1352.4 776 93.4
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 0.0e+00 1350.1 776 92.9
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 0.0e+00 1315.8 775 90.5
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 0.0e+00 1304.3 774 91.1
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 0.0e+00 1300.8 767 90.9
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 0.0e+00 1297.7 767 90.5
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 0.0e+00 1292.7 768 91.0
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 0.0e+00 1290.8 768 90.6
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 0.0e+00 1261.9 778 88.0
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 0.0e+00 1199.9 788 80.2
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 3.2e-307 1058.1 780 72.6
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 2.3e-305 1052.0 782 73.4
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 2.3e-305 1052.0 780 72.6
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 3.9e-305 1051.2 776 72.6
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 8.1e-303 1043.5 781 72.6
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 1.4e-302 1042.7 788 70.8
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 2.3e-302 1042.0 750 72.4
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 3.1e-302 1041.6 785 71.0
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 1.5e-301 1039.3 780 70.1
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 1.5e-301 1039.3 788 70.9
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 7.6e-301 1036.9 729 73.5
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 9.9e-301 1036.6 787 69.6
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 2.9e-300 1035.0 778 71.7
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 3.7e-300 1034.6 782 70.5
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 8.3e-300 1033.5 733 72.9
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 1.4e-299 1032.7 781 69.1
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 2.4e-299 1031.9 736 72.0
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 4.1e-299 1031.2 769 70.6
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 7.1e-299 1030.4 788 69.3
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 1.6e-298 1029.2 779 71.5
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 7.8e-298 1026.9 782 71.1
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 1.3e-297 1026.2 778 70.1
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 1.7e-297 1025.8 784 69.9
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 5.1e-297 1024.2 721 74.5
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 6.6e-297 1023.8 781 71.2
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 8.6e-297 1023.5 766 69.7
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 1.1e-296 1023.1 791 69.5
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 1.5e-296 1022.7 786 69.1
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 1.5e-296 1022.7 781 71.1
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 1.9e-296 1022.3 777 70.4
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 4.3e-296 1021.1 746 71.4
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 4.3e-296 1021.1 765 69.7
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 9.6e-296 1020.0 779 69.8
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 1.2e-295 1019.6 736 71.6
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 2.1e-295 1018.8 752 73.3
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 3.6e-295 1018.1 771 69.8
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 6.2e-295 1017.3 766 68.8
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 8.1e-295 1016.9 785 68.5
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 1.1e-294 1016.5 763 69.3
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 2.4e-294 1015.4 786 68.6
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 2.4e-294 1015.4 772 69.9
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 1.2e-293 1013.1 775 73.3
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 5.8e-293 1010.7 782 67.8
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 1.3e-292 1009.6 779 70.6
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 8.4e-292 1006.9 783 68.8
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 1.4e-291 1006.1 784 66.6
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 1.2e-290 1003.0 771 68.4
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 4.6e-290 1001.1 774 71.3
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 6.0e-290 1000.7 711 74.7
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 1.0e-289 1000.0 793 68.9
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 3.0e-289 998.4 782 67.6
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 6.6e-289 997.3 774 68.0
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 1.5e-288 996.1 774 71.1
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 1.5e-288 996.1 826 66.3
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 7.3e-288 993.8 780 66.8
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 3.6e-287 991.5 728 70.9
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 1.2e-285 986.5 729 71.6
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 1.2e-285 986.5 729 71.6
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 2.6e-285 985.3 753 69.5
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 3.4e-285 984.9 789 68.6
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 1.3e-284 983.0 704 71.6
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 1.2e-282 976.5 750 69.9
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 2.7e-282 975.3 789 67.6
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 2.5e-280 968.8 760 68.4
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 4.3e-280 968.0 776 67.1
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 1.8e-278 962.6 730 70.1
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 1.8e-278 962.6 771 66.3
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 2.0e-277 959.1 819 64.6
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 2.9e-276 955.3 710 71.1
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 7.1e-275 950.7 778 66.7
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 4.8e-271 937.9 727 68.6
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 8.1e-271 937.2 732 65.4
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 2.4e-270 935.6 752 67.7
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 1.2e-269 933.3 749 66.9
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 1.0e-268 930.2 797 62.6
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 1.3e-268 929.9 733 68.3
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 3.8e-268 928.3 785 63.6
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 3.2e-267 925.2 784 67.6
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 2.3e-265 919.1 658 71.3
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 3.3e-264 915.2 674 71.4
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 1.3e-263 913.3 725 68.1
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 5.0e-252 874.8 749 63.8
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 3.1e-222 775.8 642 69.9
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 4.1e-222 775.4 545 71.4
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 5.4e-222 775.0 545 71.0
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 4.7e-218 761.9 754 56.6
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 3.0e-217 759.2 758 52.5
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 3.0e-217 759.2 719 57.0
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 9.5e-211 737.6 720 56.2
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 1.6e-210 736.9 761 52.3
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 8.0e-202 708.0 543 63.5
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 7.8e-197 691.4 533 63.2
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 8.3e-191 671.4 531 62.7
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 6.4e-175 618.6 520 59.6
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 2.7e-173 613.2 416 72.4
GSVIVG01019746001 Vitis vinifera HOM05D005554 ORTHO05D007823 8.4e-159 565.1 405 70.6
HPP92_020853 Vanilla planifolia HOM05D005554 ORTHO05D007823 2.4e-153 547.0 416 64.2
Lj2C0T8 Lonicera japonica HOM05D005554 ORTHO05D007823 6.3e-138 495.7 343 73.2
HPP92_008494 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.3e-127 461.5 269 83.3
CAN.G20.10 Capsicum annuum HOM05D005554 ORTHO05D007823 8.9e-92 342.4 299 60.9
MCO12G378 Micromonas commoda HOM05D005554 ORTHO05D007823 1.4e-89 335.1 493 41.2
PRCOL_00002248 Prasinoderma coloniale HOM05D005554 ORTHO05D007823 5.0e-87 326.6 684 33.5
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 2.3e-84 317.8 265 61.1
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 3.5e-80 303.9 596 38.9
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 1.7e-66 258.5 284 53.9
Cre12.g519900 Chlamydomonas reinhardtii HOM05D005554 ORTHO05D007823 2.1e-64 251.5 585 31.8
Actinidia02000 Actinidia chinensis HOM05D005554 ORTHO05D007823 1.4e-60 238.8 353 43.9
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 5.8e-51 206.8 145 75.9
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 3.8e-50 204.1 116 87.9
SEGI_34096 Sequoiadendron giganteum HOM05D005554 ORTHO05D007823 4.8e-37 160.6 99 76.8
CSS0006848 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 1.1e-33 149.4 83 81.9
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 1.8e-31 142.1 153 52.9
MD14G1106300 Malus domestica HOM05D005554 ORTHO05D007823 1.8e-20 105.5 54 87.0
MD14G1106100 Malus domestica HOM05D005554 ORTHO05D026402 6.5e-18 97.1 91 58.2
HPP92_008492 Vanilla planifolia HOM05D005554 ORTHO05D026402 1.0e-15 89.7 138 43.5
Sabra03G0091300 Salix brachista HOM05D008679 ORTHO05D010804 2.3e-15 88.6 103 46.6
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 3.0e-15 88.2 72 68.1
MD14G1106200 Malus domestica HOM05D005554 ORTHO05D007823 2.9e-10 71.6 41 78.0
Actinidia02001 Actinidia chinensis HOM05D005554 ORTHO05D026402 9.4e-09 66.6 60 61.7
Pp3c5_9920 Physcomitrium patens HOM05D005554 ORTHO05D007823 3.0e-07 61.6 79 43.0
Pp3c3_2590 Physcomitrium patens HOM05D005554 ORTHO05D313840 1.1e-06 59.7 81 42.0


User provided reference genes

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