Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.4e-90 336.3 169 100.0
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 1.6e-86 322.8 169 94.1
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 7.9e-86 320.5 169 92.9
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 2.3e-85 318.9 169 92.3
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 3.0e-85 318.5 169 92.3
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 3.9e-85 318.2 169 92.9
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.5e-84 316.2 169 92.9
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.9e-84 315.8 167 92.8
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 2.5e-84 315.5 169 92.3
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 2.5e-84 315.5 169 91.7
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 7.4e-84 313.9 169 90.5
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 2.0e-81 305.8 169 90.5
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 4.5e-81 304.7 169 89.9
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 1.0e-77 293.5 169 85.2
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 7.4e-76 287.3 150 93.3
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 2.2e-75 285.8 167 82.6
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 2.8e-75 285.4 169 82.8
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 2.8e-75 285.4 169 83.4
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 4.8e-75 284.6 169 80.5
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 8.2e-75 283.9 167 82.0
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 1.8e-74 282.7 169 80.5
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 3.1e-74 282.0 169 80.5
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 3.1e-74 282.0 169 80.5
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 3.1e-74 282.0 169 80.5
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 4.1e-74 281.6 169 80.5
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 5.3e-74 281.2 167 80.2
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 6.9e-74 280.8 169 79.9
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 9.1e-74 280.4 169 79.9
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 9.1e-74 280.4 169 79.9
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 2.6e-73 278.9 168 81.0
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 2.6e-73 278.9 167 80.2
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 3.4e-73 278.5 169 81.7
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 4.5e-73 278.1 169 78.7
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 4.5e-73 278.1 169 79.3
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 4.5e-73 278.1 169 80.5
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 7.7e-73 277.3 166 78.9
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 1.0e-72 276.9 169 78.1
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 1.0e-72 276.9 169 79.3
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 1.7e-72 276.2 169 79.3
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 2.2e-72 275.8 169 79.9
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 2.9e-72 275.4 169 79.3
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 3.8e-72 275.0 169 76.9
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 3.8e-72 275.0 169 78.7
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 3.8e-72 275.0 169 78.7
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 5.0e-72 274.6 169 77.5
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 6.5e-72 274.2 168 79.2
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 8.5e-72 273.9 169 75.7
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 8.5e-72 273.9 166 78.3
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 8.5e-72 273.9 166 78.3
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 8.5e-72 273.9 166 78.3
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 8.5e-72 273.9 166 78.3
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 8.5e-72 273.9 167 80.8
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 1.1e-71 273.5 169 76.9
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 1.1e-71 273.5 169 76.3
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.4e-71 273.1 166 78.3
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 1.4e-71 273.1 169 76.9
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 1.4e-71 273.1 169 76.9
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 1.9e-71 272.7 168 78.6
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 1.9e-71 272.7 169 79.3
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 1.9e-71 272.7 149 89.3
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 2.5e-71 272.3 169 76.3
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 2.5e-71 272.3 169 75.7
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 5.5e-71 271.2 169 75.7
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 7.2e-71 270.8 169 77.5
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 1.2e-70 270.0 168 78.6
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.2e-70 270.0 168 78.0
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.2e-70 270.0 168 78.0
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 1.6e-70 269.6 169 78.1
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 1.6e-70 269.6 169 75.1
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 2.1e-70 269.2 169 76.3
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 6.1e-70 267.7 169 76.9
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 1.0e-69 266.9 169 76.3
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 1.0e-69 266.9 169 76.3
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 1.8e-69 266.2 166 75.9
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 3.9e-69 265.0 169 75.1
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 5.1e-69 264.6 166 75.9
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 8.8e-69 263.8 182 72.0
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 1.1e-68 263.5 170 82.4
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 1.1e-68 263.5 169 75.1
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 2.0e-68 262.7 152 86.2
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 2.0e-68 262.7 192 69.3
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.4e-68 261.5 183 70.5
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 4.4e-68 261.5 169 72.2
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 4.4e-68 261.5 186 71.0
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 5.7e-68 261.2 183 70.5
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 5.7e-68 261.2 183 70.5
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 7.4e-68 260.8 149 85.9
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 7.4e-68 260.8 149 87.9
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 9.7e-68 260.4 167 74.9
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 9.7e-68 260.4 169 76.3
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 1.3e-67 260.0 197 66.0
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 1.3e-67 260.0 169 75.1
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 3.7e-67 258.5 169 76.9
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 6.3e-67 257.7 149 82.6
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 1.4e-66 256.5 149 81.9
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 1.4e-66 256.5 169 69.8
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 1.8e-66 256.1 207 64.3
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 3.1e-66 255.4 167 76.0
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 3.1e-66 255.4 150 82.0
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 2.6e-65 252.3 168 78.0
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 2.6e-65 252.3 167 70.7
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 3.5e-65 251.9 149 81.2
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 4.5e-65 251.5 148 79.7
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 5.9e-65 251.1 149 78.5
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 5.9e-65 251.1 149 80.5
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 2.9e-64 248.8 143 82.5
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 3.8e-64 248.4 132 93.9
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 1.1e-63 246.9 169 72.8
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 1.1e-63 246.9 158 77.8
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.9e-63 246.1 214 61.2
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 3.2e-63 245.4 158 77.8
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 1.2e-62 243.4 143 81.1
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 2.7e-62 242.3 147 79.6
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 3.6e-62 241.9 167 68.9
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 1.0e-61 240.4 153 75.8
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 5.2e-61 238.0 166 70.5
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 1.5e-60 236.5 168 69.0
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 3.3e-60 235.3 153 75.2
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 8.2e-59 230.7 177 67.8
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 1.1e-58 230.3 168 66.1
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 7.0e-58 227.6 149 81.9
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 2.0e-57 226.1 239 53.6
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 3.8e-56 221.9 126 81.7
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 9.4e-55 217.2 156 69.9
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 1.6e-54 216.5 167 64.1
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 8.8e-53 210.7 124 79.0
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 1.5e-52 209.9 169 65.1
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 2.2e-51 206.1 123 78.0
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 3.7e-51 205.3 191 56.5
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 5.3e-50 201.4 157 62.4
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 9.1e-50 200.7 124 81.5
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 2.0e-49 199.5 124 80.6
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 6.5e-48 194.5 166 62.7
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 4.2e-47 191.8 121 78.5
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 5.5e-47 191.4 121 77.7
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 5.5e-47 191.4 121 77.7
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 1.2e-46 190.3 121 76.9
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 1.4e-45 186.8 123 74.8
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 4.0e-45 185.3 124 76.6
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 5.7e-44 181.4 145 68.3
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.7e-43 179.9 141 66.0
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 1.8e-42 176.4 136 62.5
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 6.1e-38 161.4 106 76.4
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 2.0e-36 156.4 90 78.9
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 1.3e-35 153.7 90 82.2
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 6.3e-35 151.4 94 80.9
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 1.9e-31 139.8 83 84.3
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.8e-30 136.0 82 84.1
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 2.0e-28 129.8 110 59.1
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 6.4e-27 124.8 91 64.8
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.1e-26 124.0 78 74.4
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 4.1e-26 122.1 74 83.8
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 9.2e-26 120.9 93 61.3
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 4.6e-25 118.6 73 82.2
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 9.5e-23 110.9 64 87.5
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 8.0e-22 107.8 102 56.9
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.6e-20 102.8 65 83.1
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 9.8e-20 100.9 75 66.7
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 9.2e-18 94.4 138 37.0
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 6.0e-17 91.7 150 38.0
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 1.1e-13 80.9 108 50.0
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 6.8e-13 78.2 49 77.6
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 6.8e-13 78.2 49 77.6
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 1.2e-12 77.4 167 31.1
Rhsim04G0093100 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.7e-11 73.6 44 70.5
FAN04G2473 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.1e-07 60.8 38 63.2


User provided reference genes

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