Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR038370 Cardamine hirsuta HOM05D004976 ORTHO05D004851 1.5e-48 195.7 88 100.0
CARHR217450 Cardamine hirsuta HOM05D004976 ORTHO05D004851 3.3e-27 124.8 67 77.6
CARHR146840 Cardamine hirsuta HOM05D004976 ORTHO05D004851 6.9e-25 117.1 67 74.6
Thhalv10003059m.g Eutrema salsugineum HOM05D004976 ORTHO05D004851 1.9e-22 109.0 67 70.1
Thhalv10015769m.g Eutrema salsugineum HOM05D004976 ORTHO05D004851 7.1e-22 107.1 67 65.7
AL1G41300 Arabidopsis lyrata HOM05D004976 ORTHO05D004851 9.3e-22 106.7 67 64.2
BcaNung01203 Brassica carinata HOM05D000003 ORTHO05D000004 3.5e-21 104.8 67 62.7
AT3G23320 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 6.1e-21 104.0 68 64.7
C02p57240 Brassica napus HOM05D000003 ORTHO05D004851 1.3e-20 102.8 67 58.2
BcaB02g10660 Brassica carinata HOM05D000003 ORTHO05D000004 2.3e-20 102.1 65 63.1
Sp6g05670 Schrenkiella parvula HOM05D004976 ORTHO05D004851 2.3e-20 102.1 67 61.2
BolC9t56103H Brassica oleracea HOM05D004976 ORTHO05D004851 3.9e-20 101.3 67 59.7
C09p45640 Brassica napus HOM05D004976 ORTHO05D004851 6.7e-20 100.5 67 58.2
BolC1t01989H Brassica oleracea HOM05D004976 ORTHO05D004851 1.9e-19 99.0 67 56.7
Sp7g07570 Schrenkiella parvula HOM05D004976 ORTHO05D004851 3.3e-19 98.2 67 59.7
AT5G65005 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 5.7e-19 97.4 67 61.2
AT1G52990 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 4.8e-18 94.4 64 65.6
CARHR287060 Cardamine hirsuta HOM05D004976 ORTHO05D004851 1.4e-17 92.8 59 64.4
AL3G31830 Arabidopsis lyrata HOM05D004976 ORTHO05D004851 3.4e-16 88.2 63 60.3
Thhalv10005379m.g Eutrema salsugineum HOM05D004976 ORTHO05D004851 7.7e-16 87.0 55 67.3
C07p29330 Brassica napus HOM05D004976 ORTHO05D004851 2.2e-15 85.5 59 57.6
BcaC01g03112 Brassica carinata HOM05D000003 ORTHO05D004851 2.1e-13 79.0 57 54.4
Thhalv10028305m.g Eutrema salsugineum HOM05D004976 ORTHO05D004851 2.1e-13 79.0 55 63.6
C09p39900 Brassica napus HOM05D000003 ORTHO05D000004 2.7e-13 78.6 48 60.4
AT5G44470 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 1.8e-12 75.9 50 62.0
BcaB05g22432 Brassica carinata HOM05D000003 ORTHO05D000004 2.0e-11 72.4 67 44.8
AL6G25390 Arabidopsis lyrata HOM05D004976 ORTHO05D004851 7.4e-11 70.5 49 57.1
BcaB01g00937 Brassica carinata HOM05D000003 ORTHO05D000004 1.3e-10 69.7 65 46.2
BcaC06g30787 Brassica carinata HOM05D000003 ORTHO05D000004 2.2e-10 68.9 67 38.8
Aa31LG9G1250 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.7e-10 68.2 86 36.0
BcaB01g00479 Brassica carinata HOM05D000003 ORTHO05D004851 1.1e-09 66.6 64 43.8
BcaC09g49873 Brassica carinata HOM05D000003 ORTHO05D000004 1.1e-09 66.6 67 38.8
BcaC01g02706 Brassica carinata HOM05D000003 ORTHO05D000004 2.4e-09 65.5 65 41.5
BraA02t07436Z Brassica rapa HOM05D004976 ORTHO05D004851 2.4e-09 65.5 89 37.1
Aa31LG9G1700 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.1e-09 64.7 67 40.3
AT4G09775 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 4.1e-09 64.7 67 41.8
BcaC05g28671 Brassica carinata HOM05D000003 ORTHO05D004851 4.1e-09 64.7 67 40.3
BolC5t33522H Brassica oleracea HOM05D004976 ORTHO05D004851 4.1e-09 64.7 67 40.3
BraA03t14020Z Brassica rapa HOM05D004976 ORTHO05D004851 4.1e-09 64.7 70 44.3
Aa31sc52G80 Aethionema arabicum HOM05D000003 ORTHO05D000004 5.3e-09 64.3 67 35.8
Sp3g33160 Schrenkiella parvula HOM05D004976 ORTHO05D004851 6.9e-09 63.9 67 37.3
Aa31sc295G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 9.1e-09 63.5 66 37.9
Aa31sc85G20 Aethionema arabicum HOM05D000003 ORTHO05D000004 9.1e-09 63.5 67 41.8
A06p33810 Brassica napus HOM05D004976 ORTHO05D004851 9.1e-09 63.5 67 41.8
Aa31LG1G4960 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.5e-08 62.8 67 37.3
AT2G02650 Arabidopsis thaliana HOM05D000003 ORTHO05D000004 1.5e-08 62.8 67 41.8
BolC5t29232H Brassica oleracea HOM05D004976 ORTHO05D004851 3.4e-08 61.6 67 38.8
BcaC01g05506 Brassica carinata HOM05D000003 ORTHO05D001498 4.5e-08 61.2 68 36.8
C05p50100 Brassica napus HOM05D004976 ORTHO05D004851 4.5e-08 61.2 67 40.3
BraA01t02778Z Brassica rapa HOM05D004976 ORTHO05D004851 4.5e-08 61.2 67 40.3
Aa31sc18G100 Aethionema arabicum HOM05D000003 ORTHO05D000004 7.7e-08 60.5 65 40.0
Thhalv10010973m.g Eutrema salsugineum HOM05D004976 ORTHO05D004851 7.7e-08 60.5 63 42.9
Sp4g06100 Schrenkiella parvula HOM05D004976 ORTHO05D004851 7.7e-08 60.5 67 38.8
Thhalv10009902m.g Eutrema salsugineum HOM05D004976 ORTHO05D004851 1.0e-07 60.1 67 34.3
Aa31sc502G20 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.3e-07 59.7 67 37.3
AT2G46460 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 1.3e-07 59.7 71 40.8
BraA07t28107Z Brassica rapa HOM05D000003 ORTHO05D001498 1.3e-07 59.7 65 41.5
C09p38060 Brassica napus HOM05D000003 ORTHO05D012821 1.7e-07 59.3 68 36.8
C09p31080 Brassica napus HOM05D004976 ORTHO05D004851 2.2e-07 58.9 42 54.8
BolC8t48401H Brassica oleracea HOM05D004976 ORTHO05D004851 2.2e-07 58.9 67 40.3
BolC9t55965H Brassica oleracea HOM05D004976 ORTHO05D004851 2.2e-07 58.9 42 54.8
CARHR043800 Cardamine hirsuta HOM05D004976 ORTHO05D004851 2.2e-07 58.9 69 37.7
Aa31LG10G8780 Aethionema arabicum HOM05D004976 ORTHO05D004851 2.9e-07 58.5 67 35.8
Aa31sc230G10 Aethionema arabicum HOM05D000003 ORTHO05D004851 2.9e-07 58.5 64 39.1
BcaB08g35528 Brassica carinata HOM05D004976 ORTHO05D004851 2.9e-07 58.5 67 35.8
AT1G27870 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 3.8e-07 58.2 67 37.3
BcaC01g03243 Brassica carinata HOM05D004976 ORTHO05D004851 3.8e-07 58.2 46 52.2
BraA06t25797Z Brassica rapa HOM05D000003 ORTHO05D001498 6.5e-07 57.4 67 40.3
Aa31LG6G10540 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.1e-06 56.6 68 33.8
Aa31LG8G10880 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.4e-06 56.2 67 32.8
BcaC09g49254 Brassica carinata HOM05D000003 ORTHO05D001498 1.4e-06 56.2 72 36.1
C02p26690 Brassica napus HOM05D004976 ORTHO05D004851 1.4e-06 56.2 67 37.3
BraA06t23723Z Brassica rapa HOM05D004976 ORTHO05D004851 1.4e-06 56.2 67 35.8
Sp2g06190 Schrenkiella parvula HOM05D053076 ORTHO05D004851 1.4e-06 56.2 67 34.3
Thhalv10022287m.g Eutrema salsugineum HOM05D004976 ORTHO05D004851 1.9e-06 55.8 67 37.3
SpUn0001_0110 Schrenkiella parvula HOM05D000003 ORTHO05D004851 1.9e-06 55.8 67 34.3
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 1.9e-06 55.8 63 39.7
Aa31sc214G50 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.5e-06 55.5 67 35.8
BcaC02g10407 Brassica carinata HOM05D004976 ORTHO05D004851 2.5e-06 55.5 67 32.8
BcaC05g24575 Brassica carinata HOM05D000003 ORTHO05D001498 2.5e-06 55.5 65 32.3
Aa31LG4G10800 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.2e-06 55.1 65 33.8
Aa31LG9G3130 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.2e-06 55.1 67 32.8
BolC1t02896H Brassica oleracea HOM05D004976 ORTHO05D004851 3.2e-06 55.1 67 35.8
Sp1g38880 Schrenkiella parvula HOM05D000003 ORTHO05D004851 3.2e-06 55.1 64 34.4
Sp7g06900 Schrenkiella parvula HOM05D004976 ORTHO05D004851 3.2e-06 55.1 67 37.3
BcaB04g18843 Brassica carinata HOM05D000003 ORTHO05D001498 4.2e-06 54.7 65 35.4
BcaNung01080 Brassica carinata HOM05D000003 ORTHO05D001498 4.2e-06 54.7 65 32.3
A09p37980 Brassica napus HOM05D004976 ORTHO05D004851 4.2e-06 54.7 67 37.3
Sp4g04930 Schrenkiella parvula HOM05D000003 ORTHO05D004851 4.2e-06 54.7 64 35.9
AT1G04625 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 7.2e-06 53.9 69 37.7
AT3G25270 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 7.2e-06 53.9 69 36.2
BcaB03g16045 Brassica carinata HOM05D000003 ORTHO05D001498 9.4e-06 53.5 65 33.8
BcaC02g07192 Brassica carinata HOM05D000003 ORTHO05D001498 9.4e-06 53.5 65 35.4
BraA08t35107Z Brassica rapa HOM05D004976 ORTHO05D004851 9.4e-06 53.5 67 34.3
SpUn0004_0210 Schrenkiella parvula HOM05D000003 ORTHO05D004851 9.4e-06 53.5 44 43.2


User provided reference genes

Program Settings