Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 1.6e-205 719.2 356 100.0
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 1.0e-183 646.7 351 91.7
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 4.3e-182 641.3 351 91.5
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 2.3e-180 635.6 349 90.5
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 2.0e-179 632.5 347 90.5
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 4.4e-179 631.3 352 88.6
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 3.7e-178 628.2 354 89.0
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 1.1e-177 626.7 353 88.4
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 1.4e-177 626.3 353 88.1
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 1.9e-177 625.9 351 88.9
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 6.0e-176 620.9 351 88.3
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 1.1e-172 610.1 354 87.3
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 1.9e-166 589.3 353 85.3
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 1.5e-158 563.1 362 78.2
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 3.5e-152 542.0 400 70.8
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 3.8e-146 521.9 354 77.4
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 3.9e-143 511.9 331 75.5
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 2.1e-141 506.1 355 70.1
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.1e-141 506.1 346 72.0
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.4e-140 502.7 346 72.5
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 2.4e-140 502.7 325 74.5
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 1.1e-137 493.8 338 72.8
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 1.4e-137 493.4 317 75.1
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 1.9e-137 493.0 322 74.5
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 1.9e-137 493.0 317 74.8
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 5.4e-137 491.5 323 73.1
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 5.4e-137 491.5 348 70.1
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 7.1e-137 491.1 352 68.2
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 7.1e-137 491.1 317 74.4
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 7.1e-137 491.1 319 74.3
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 2.7e-136 489.2 341 69.5
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 2.7e-136 489.2 322 73.6
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 3.5e-136 488.8 319 73.0
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 3.5e-136 488.8 321 72.6
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 7.9e-136 487.6 347 69.7
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 3.0e-135 485.7 319 71.2
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 3.9e-135 485.3 319 73.4
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 5.1e-135 485.0 323 71.8
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 6.7e-135 484.6 322 72.0
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 6.7e-135 484.6 320 71.9
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 6.7e-135 484.6 340 70.0
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 8.7e-135 484.2 350 68.9
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 8.7e-135 484.2 382 66.2
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 8.7e-135 484.2 325 71.7
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.1e-134 483.8 345 69.3
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 4.3e-134 481.9 328 71.6
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 4.3e-134 481.9 325 70.5
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 7.4e-134 481.1 328 72.0
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 7.4e-134 481.1 336 70.8
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.6e-133 479.9 319 72.7
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.6e-133 479.9 318 72.6
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 2.8e-133 479.2 342 68.7
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 3.7e-133 478.8 328 69.8
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 4.8e-133 478.4 319 72.4
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 4.8e-133 478.4 319 72.4
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 8.1e-133 477.6 330 70.3
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 8.1e-133 477.6 330 70.6
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 1.1e-132 477.2 331 71.0
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 1.1e-132 477.2 320 71.6
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 2.4e-132 476.1 321 73.5
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 3.1e-132 475.7 329 69.6
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 9.0e-132 474.2 343 68.5
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 1.2e-131 473.8 341 68.3
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 4.5e-131 471.9 338 68.6
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 4.5e-131 471.9 335 68.4
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 5.8e-131 471.5 321 71.7
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 7.6e-131 471.1 344 67.4
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.0e-130 470.7 319 70.8
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 1.7e-130 469.9 324 70.4
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 1.7e-130 469.9 373 64.3
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 2.2e-130 469.5 318 71.4
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 2.9e-130 469.2 321 71.7
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 3.8e-130 468.8 345 67.2
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 6.5e-130 468.0 353 67.1
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 8.4e-130 467.6 323 69.7
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 1.4e-129 466.8 334 68.3
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 1.9e-129 466.5 304 73.4
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 4.2e-129 465.3 326 69.9
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 4.2e-129 465.3 306 71.6
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 7.1e-129 464.5 357 65.0
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 9.3e-129 464.2 331 68.3
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 1.6e-128 463.4 350 67.1
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 1.6e-128 463.4 327 70.6
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 2.7e-128 462.6 330 68.8
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 3.5e-128 462.2 320 69.4
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 3.5e-128 462.2 330 68.8
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 4.6e-128 461.8 319 69.6
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 6.0e-128 461.5 341 66.9
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 7.9e-128 461.1 321 69.5
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.0e-127 460.7 351 65.8
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 1.3e-127 460.3 315 72.1
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 1.8e-127 459.9 347 66.0
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 2.3e-127 459.5 343 66.5
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 3.0e-127 459.1 330 68.8
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 3.9e-127 458.8 321 70.1
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 8.7e-127 457.6 322 68.3
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 1.1e-126 457.2 307 72.3
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 1.5e-126 456.8 310 71.9
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 1.9e-126 456.4 321 69.8
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 5.7e-126 454.9 337 67.1
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 7.4e-126 454.5 337 67.4
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 1.1e-124 450.7 359 62.4
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 1.1e-124 450.7 333 67.0
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 1.4e-124 450.3 327 67.0
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 1.4e-124 450.3 333 67.0
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 1.8e-124 449.9 333 67.6
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 1.8e-124 449.9 318 69.2
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 9.0e-124 447.6 333 66.4
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 1.2e-123 447.2 327 66.1
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.2e-123 447.2 305 70.5
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 1.2e-123 447.2 344 65.1
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 1.3e-122 443.7 338 66.3
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 5.0e-122 441.8 328 66.5
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 8.4e-122 441.0 326 66.9
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 4.2e-121 438.7 381 59.8
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 2.1e-120 436.4 307 68.7
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 4.6e-120 435.3 313 67.4
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 4.6e-120 435.3 340 64.4
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 1.8e-119 433.3 328 65.5
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 1.5e-118 430.3 325 65.8
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 6.3e-117 424.9 324 64.8
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 2.6e-115 419.5 341 62.2
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.2e-112 410.6 318 64.5
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 2.5e-110 402.9 541 44.0
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 2.5e-110 402.9 325 60.9
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 1.3e-109 400.6 317 62.5
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 1.3e-109 400.6 260 74.2
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 6.5e-106 388.3 266 72.6
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 1.9e-105 386.7 253 73.1
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 8.8e-103 377.9 262 71.0
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 9.7e-102 374.4 326 58.9
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 5.2e-95 352.1 317 56.5
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 3.5e-91 339.3 322 52.5
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 1.7e-90 337.0 283 61.8
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 1.5e-89 334.0 209 73.2
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.6e-88 330.5 206 75.2
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 2.1e-88 330.1 223 71.7
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 4.1e-84 315.8 300 53.0
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 5.9e-83 312.0 267 60.7
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 6.5e-82 308.5 216 67.6
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 5.5e-81 305.4 199 74.9
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 1.0e-79 301.2 232 65.1
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 6.1e-72 275.4 163 81.6
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 2.0e-70 270.4 375 42.7
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.2e-62 244.6 182 65.4
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 6.4e-61 238.8 161 71.4
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.7e-58 230.7 158 72.8
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 6.6e-58 228.8 215 57.7
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 3.6e-56 223.0 161 70.8
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 9.2e-52 208.4 162 63.0
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 3.1e-47 193.4 331 39.3
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 4.4e-46 189.5 253 42.3
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 9.2e-44 181.8 119 68.9
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 6.6e-42 175.6 189 50.8
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 1.9e-33 147.5 335 32.8
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 3.6e-32 143.3 110 69.1
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 1.7e-29 134.4 386 31.1
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 3.9e-26 123.2 109 51.4
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 5.1e-26 122.9 248 32.3
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 1.8e-23 114.4 65 81.5
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 2.6e-22 110.5 128 48.4
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 2.3e-18 97.4 91 51.6
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 4.3e-17 93.2 56 80.4
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 8.1e-16 89.0 57 71.9
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 9.0e-15 85.5 57 71.9
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 4.2e-12 76.6 60 61.7
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 4.6e-11 73.2 65 56.9
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 1.2e-06 58.5 130 32.3


User provided reference genes

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