Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR027260 Cardamine hirsuta HOM05D001879 ORTHO05D007648 0.0e+00 1402.9 754 100.0
AL1G41280 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 0.0e+00 1251.1 769 87.8
AT1G27750 Arabidopsis thaliana HOM05D001879 ORTHO05D007648 0.0e+00 1248.8 769 85.8
Thhalv10006638m.g Eutrema salsugineum HOM05D001879 ORTHO05D007648 0.0e+00 1221.5 768 83.3
Carub.0001s2626 Capsella rubella HOM05D001879 ORTHO05D007648 0.0e+00 1209.9 759 82.7
Sp1g23980 Schrenkiella parvula HOM05D001879 ORTHO05D007648 0.0e+00 1168.7 765 83.7
BolC5t31365H Brassica oleracea HOM05D001879 ORTHO05D007648 0.0e+00 1141.3 757 79.5
A09p38350 Brassica napus HOM05D001879 ORTHO05D007648 0.0e+00 1100.1 757 77.5
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 0.0e+00 1097.4 763 76.8
C05p26440 Brassica napus HOM05D001879 ORTHO05D007648 0.0e+00 1096.6 757 77.3
Aa31sc113G20 Aethionema arabicum HOM05D001879 ORTHO05D007648 9.7e-285 983.4 707 75.7
BcaC05g26775 Brassica carinata HOM05D001879 ORTHO05D007648 7.5e-253 877.5 758 69.7
Thecc.08G090000 Theobroma cacao HOM05D001879 ORTHO05D007648 3.9e-161 572.8 846 44.8
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 8.2e-159 565.1 792 46.2
Gohir.A05G209500 Gossypium hirsutum HOM05D001879 ORTHO05D007648 1.2e-157 561.2 877 43.6
Gorai.009G219200 Gossypium raimondii HOM05D001879 ORTHO05D007648 5.9e-157 558.9 876 44.5
Gohir.D05G212700 Gossypium hirsutum HOM05D001879 ORTHO05D007648 6.5e-156 555.4 876 44.6
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 2.3e-153 547.0 877 42.5
Prupe.1G423900 Prunus persica HOM05D001879 ORTHO05D007648 1.1e-150 538.1 890 41.8
MD08G1086000 Malus domestica HOM05D001879 ORTHO05D007648 2.0e-149 533.9 863 41.9
FAN27G0954 Fragaria x ananassa HOM05D001879 ORTHO05D007648 7.7e-149 531.9 874 41.5
FAN15G3244 Fragaria x ananassa HOM05D001879 ORTHO05D007648 1.0e-148 531.6 842 43.2
FAN24G0874 Fragaria x ananassa HOM05D001879 ORTHO05D007648 2.0e-144 517.3 843 42.0
GSVIVG01009356001 Vitis vinifera HOM05D001879 ORTHO05D007648 2.2e-143 513.8 825 39.6
QL12p037902 Quercus lobata HOM05D001879 ORTHO05D007648 1.4e-142 511.1 976 38.7
Haze_22324 Corylus avellana HOM05D001879 ORTHO05D007648 1.5e-139 501.1 990 38.4
Sabra14G0010800 Salix brachista HOM05D001879 ORTHO05D007648 2.5e-139 500.4 948 37.3
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 1.6e-138 497.7 789 44.4
Manes.05G181200 Manihot esculenta HOM05D001879 ORTHO05D007648 4.7e-138 496.1 956 39.1
Dinv44962 Davidia involucrata HOM05D001879 ORTHO05D007648 1.8e-137 494.2 1039 37.6
Cfa013681 Carpinus fangiana HOM05D001879 ORTHO05D007648 6.8e-137 492.3 1001 37.6
Potri.014G017000 Populus trichocarpa HOM05D001879 ORTHO05D007648 6.8e-137 492.3 949 36.9
Actinidia10192 Actinidia chinensis HOM05D001879 ORTHO05D007648 3.7e-135 486.5 899 38.4
TWI56G1003 Tripterygium wilfordii HOM05D001879 ORTHO05D007648 1.2e-133 481.5 965 37.6
CiPaw.07G175900 Carya illinoinensis HOM05D001879 ORTHO05D007648 2.9e-132 476.9 1011 35.8
Lj4A759T48 Lonicera japonica HOM05D001879 ORTHO05D007648 2.6e-128 463.8 935 37.3
Cc10_g05690 Coffea canephora HOM05D001879 ORTHO05D007648 1.3e-127 461.5 841 39.1
HanXRQChr08g0220641 Helianthus annuus HOM05D001879 ORTHO05D007648 1.6e-122 444.5 757 42.8
TPR.G3779 Trifolium pratense HOM05D001879 ORTHO05D007648 7.5e-120 435.6 917 38.2
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 3.7e-119 433.3 843 40.0
Lj5g0015061 Lotus japonicus HOM05D001879 ORTHO05D007648 6.4e-119 432.6 949 36.4
FAN20G0949 Fragaria x ananassa HOM05D001879 ORTHO05D007648 8.3e-119 432.2 809 40.3
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 3.5e-117 426.8 987 34.7
Eucgr.F02258 Eucalyptus grandis HOM05D001879 ORTHO05D007648 2.5e-115 420.6 976 36.1
Glyma.17G235900 Glycine max HOM05D001879 ORTHO05D007648 7.3e-115 419.1 978 35.4
Medtr1g018350 Medicago truncatula HOM05D001879 ORTHO05D007648 1.6e-114 417.9 966 36.1
DCAR_008854 Daucus carota HOM05D001879 ORTHO05D007648 3.6e-114 416.8 943 34.9
arahy.Tifrunner.gnm1.ann1.6NC3R4 Arachis hypogaea HOM05D001879 ORTHO05D007648 4.7e-114 416.4 935 36.8
Rhsim07G0220800 Rhododendron simsii HOM05D001879 ORTHO05D007648 1.4e-113 414.8 919 36.6
SalBow7G0276 Salvia bowleyana HOM05D001879 ORTHO05D007648 8.9e-113 412.1 1000 34.5
arahy.Tifrunner.gnm1.ann1.0QZG7W Arachis hypogaea HOM05D001879 ORTHO05D007648 1.2e-112 411.8 945 36.3
VMungo0647G0280 Vigna mungo HOM05D001879 ORTHO05D007648 1.2e-112 411.8 996 34.1
ECA247G3074 Erigeron canadensis HOM05D001879 ORTHO05D007648 2.0e-112 411.0 749 37.2
Glyma.14G088600 Glycine max HOM05D001879 ORTHO05D007648 3.4e-112 410.2 976 35.1
EL10Ac1g02391 Beta vulgaris HOM05D001879 ORTHO05D007648 2.9e-111 407.1 861 36.5
Sed0027780 Sechium edule HOM05D001879 ORTHO05D007648 4.9e-111 406.4 1002 34.5
Lalb_Chr24g0399421 Lupinus albus HOM05D001879 ORTHO05D007648 1.9e-110 404.4 990 35.6
CsaV3_4G034990 Cucumis sativus L. HOM05D001879 ORTHO05D007648 9.2e-110 402.1 991 34.1
MSTRG.1026 Avicennia marina HOM05D001879 ORTHO05D007648 1.0e-108 398.7 968 35.8
Phvul.001G026900 Phaseolus vulgaris HOM05D001879 ORTHO05D007648 2.3e-108 397.5 985 32.9
CANSAT25G1585 Cannabis sativa HOM05D001879 ORTHO05D007648 4.3e-107 393.3 1052 32.9
ClCG05G020550 Citrullus lanatus HOM05D001879 ORTHO05D007648 4.7e-106 389.8 1055 32.5
SGA_v2.0_scaffold238G43965 Striga asiatica HOM05D001879 ORTHO05D007648 8.1e-106 389.0 914 34.5
Peaxi162Scf00081g01617 Petunia axillaris HOM05D001879 ORTHO05D007648 1.2e-101 375.2 1024 33.7
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 6.0e-101 372.9 814 36.4
PSO017G6116 Papaver somniferum HOM05D001879 ORTHO05D007648 6.0e-101 372.9 1019 32.5
Lsat_1_v5_gn_1_24340 Lactuca sativa HOM05D001879 ORTHO05D007648 1.3e-100 371.7 746 39.1
Hund24034 Selenicereus undatus HOM05D001879 ORTHO05D007648 6.6e-100 369.4 888 34.5
TAR633G2582 Trochodendron aralioides HOM05D001879 ORTHO05D007648 4.7e-98 363.2 1024 32.1
Solyc04g077940.4 Solanum lycopersicum HOM05D001879 ORTHO05D007648 6.2e-98 362.8 1039 32.1
Nitab4.5_0000164g0150 Nicotiana tabacum HOM05D001879 ORTHO05D007648 2.0e-96 357.8 1016 31.7
Sopen04g031540 Solanum pennellii HOM05D001879 ORTHO05D007648 5.8e-96 356.3 1038 31.6
Nn5g30557 Nelumbo nucifera HOM05D001879 ORTHO05D007648 1.4e-94 351.7 906 33.1
Aqoxy5G00884 Aquilegia oxysepala HOM05D001879 ORTHO05D007648 4.2e-94 350.1 1035 30.4
RcHm_v2.0_Chr6g0309441 Rosa chinensis HOM05D001879 ORTHO05D007648 4.0e-89 333.6 637 36.4
Sc15g0005720 Simmondsia chinensis HOM05D001879 ORTHO05D007648 2.9e-87 327.4 814 35.9
FvH4_2g33220 Fragaria vesca HOM05D001879 ORTHO05D007648 9.3e-86 322.4 530 39.8
Nitab4.5_0003803g0020 Nicotiana tabacum HOM05D001879 ORTHO05D007648 9.3e-86 322.4 1021 30.9
HPP92_019611 Vanilla planifolia HOM05D001879 ORTHO05D007648 9.3e-86 322.4 899 32.0
AUR62037434 Chenopodium quinoa HOM05D001879 ORTHO05D007648 4.3e-83 313.5 845 30.7
CSS0015613 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007648 5.8e-80 303.1 453 39.3
ATR0208G021 Amborella trichopoda HOM05D001879 ORTHO05D007648 1.7e-79 301.6 644 38.7
Psat6g016280 Pisum sativum HOM05D001879 ORTHO05D007648 2.7e-77 294.3 886 32.6
CDE06G0223 Ceratophyllum demersum HOM05D001879 ORTHO05D007648 5.6e-75 286.6 1051 28.7
AUR62038814 Chenopodium quinoa HOM05D001879 ORTHO05D007648 2.9e-71 274.2 820 28.7
SHI08394 Sapria himalayana HOM05D001879 ORTHO05D007648 2.3e-68 264.6 756 32.3
Os01g0765300 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 7.4e-67 259.6 625 34.9
Lalb_Chr22g0355581 Lupinus albus HOM05D001879 ORTHO05D007648 1.6e-66 258.5 485 37.1
Cpa.g.sc142.15 Carica papaya HOM05D001879 ORTHO05D007648 1.2e-64 252.3 422 37.2
BcaC06g35319 Brassica carinata HOM05D001879 ORTHO05D007648 1.4e-62 245.4 469 39.4
Oeu022102.3 Olea europaea HOM05D001879 ORTHO05D007648 2.5e-62 244.6 907 30.5
C07p17470 Brassica napus HOM05D001879 ORTHO05D007648 1.9e-54 218.4 271 49.8
vmacro22059 Vaccinium macrocarpon HOM05D001879 ORTHO05D007648 9.1e-49 199.5 155 60.6
Ca_13223_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 7.7e-48 196.4 658 32.7
BolC7t42252H Brassica oleracea HOM05D001879 ORTHO05D007648 4.1e-41 174.1 88 92.0
SEGI_08589 Sequoiadendron giganteum HOM05D001879 ORTHO05D007648 2.6e-40 171.4 251 39.0
Cpa.g.sc142.16 Carica papaya HOM05D001879 ORTHO05D007648 1.0e-36 159.5 327 41.6
RcHm_v2.0_Chr6g0309451 Rosa chinensis HOM05D001879 ORTHO05D007648 2.3e-36 158.3 102 68.6
AagrBONN_evm.TU.Sc2ySwM_117.1790 Anthoceros agrestis HOM05D001879 ORTHO05D007648 1.7e-34 152.1 143 47.6
Pp3c24_10810 Physcomitrium patens HOM05D001879 ORTHO05D007648 1.4e-33 149.1 140 51.4
Zm00001eb152180 Zea mays HOM05D001879 ORTHO05D007648 1.6e-32 145.6 749 24.4
Ca_20160_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 3.8e-31 141.0 200 43.5
Mapoly0006s0231 Marchantia polymorpha HOM05D001879 ORTHO05D007648 1.0e-28 132.9 381 38.6
CBR_g6612 Chara braunii HOM05D001879 ORTHO05D007648 8.8e-28 129.8 161 42.9
Ca_09349_v3 Cicer arietinum L. HOM05D000083 ORTHO05D002968 5.7e-27 127.1 254 36.2
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 4.8e-26 124.0 176 40.3
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 1.6e-16 92.4 359 24.2
Duzib116G0273 Durio zibethinus HOM05D001879 ORTHO05D007648 3.6e-13 81.3 215 30.2
CBR_g6294 Chara braunii HOM05D001879 ORTHO05D007648 2.3e-12 78.6 210 30.0
Cre09.g398030 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007648 2.3e-12 78.6 146 34.9
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 2.3e-12 78.6 61 57.4
PGSC0003DMG400024244 Solanum tuberosum HOM05D001879 ORTHO05D007648 5.2e-12 77.4 77 45.5
PGSC0003DMG400024243 Solanum tuberosum HOM05D001879 ORTHO05D007648 1.2e-11 76.3 77 44.2
Ca_13228_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 2.6e-11 75.1 53 60.4
TAR381G1003 Trochodendron aralioides HOM05D001879 ORTHO05D007648 1.4e-09 69.3 54 53.7
Sopen05g013150 Solanum pennellii HOM05D001879 ORTHO05D007648 3.9e-07 61.2 74 37.8


User provided reference genes

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