Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR023830 Cardamine hirsuta HOM05D004907 ORTHO05D005707 2.5e-228 795.0 392 100.0
AT1G23390 Arabidopsis thaliana HOM05D004907 ORTHO05D005707 6.8e-173 610.9 382 80.9
AL1G37180 Arabidopsis lyrata HOM05D004907 ORTHO05D005707 1.2e-172 610.1 381 80.6
Carub.0001s2297 Capsella rubella HOM05D004907 ORTHO05D005707 1.5e-172 609.8 389 79.4
Thhalv10007835m.g Eutrema salsugineum HOM05D004907 ORTHO05D005707 6.4e-163 577.8 396 75.5
Sp1g20830 Schrenkiella parvula HOM05D004907 ORTHO05D005707 1.5e-159 566.6 390 73.1
C05p22690 Brassica napus HOM05D004907 ORTHO05D005707 7.3e-159 564.3 390 73.8
BraA09t39619Z Brassica rapa HOM05D004907 ORTHO05D005707 9.5e-159 563.9 390 73.8
BolC5t30967H Brassica oleracea HOM05D004907 ORTHO05D005707 1.2e-158 563.5 390 73.8
A09p41240 Brassica napus HOM05D004907 ORTHO05D005707 1.6e-158 563.1 390 73.8
BcaC05g26256 Brassica carinata HOM05D004907 ORTHO05D005707 2.8e-158 562.4 390 73.3
BcaB07g32334 Brassica carinata HOM05D004907 ORTHO05D005707 2.2e-155 552.7 392 73.7
Aa31LG7G7420 Aethionema arabicum HOM05D004907 ORTHO05D005707 2.0e-132 476.5 388 64.2
THA.LOC104822976 Tarenaya hassleriana HOM05D004907 ORTHO05D005707 1.6e-110 403.7 398 55.3
Cfa009181 Carpinus fangiana HOM05D004907 ORTHO05D005707 8.5e-83 311.6 372 44.4
RcHm_v2.0_Chr4g0441991 Rosa chinensis HOM05D004907 ORTHO05D005707 6.1e-81 305.4 382 44.5
CiPaw.05G186900 Carya illinoinensis HOM05D004907 ORTHO05D005707 1.0e-80 304.7 370 43.2
Haze_12215 Corylus avellana HOM05D004907 ORTHO05D005707 1.4e-80 304.3 367 44.4
Duzib268G1138 Durio zibethinus HOM05D004907 ORTHO05D005707 6.7e-80 302.0 370 44.6
Manes.13G027600 Manihot esculenta HOM05D004907 ORTHO05D005707 2.6e-79 300.1 369 44.7
Gohir.D01G149900 Gossypium hirsutum HOM05D004907 ORTHO05D005707 7.5e-79 298.5 370 44.9
CiPaw.06G069900 Carya illinoinensis HOM05D004907 ORTHO05D005707 2.8e-78 296.6 385 42.3
Ciclev10031561m.g Citrus clementina HOM05D004907 ORTHO05D005707 1.4e-77 294.3 382 44.5
Duzib268G1696 Durio zibethinus HOM05D004907 ORTHO05D005707 1.4e-77 294.3 373 45.6
CAN.G728.4 Capsicum annuum HOM05D004907 ORTHO05D005707 3.1e-77 293.1 382 42.4
Gorai.002G186000 Gossypium raimondii HOM05D004907 ORTHO05D005707 5.3e-77 292.4 370 44.1
Gohir.D02G160600 Gossypium hirsutum HOM05D004907 ORTHO05D005707 5.9e-76 288.9 372 41.7
CSS0001528 Camellia sinensis var. sinensis HOM05D004907 ORTHO05D005707 1.0e-75 288.1 376 44.4
FAN07G1203 Fragaria x ananassa HOM05D004907 ORTHO05D005707 1.0e-75 288.1 385 41.6
CANSAT01G1025 Cannabis sativa HOM05D004907 ORTHO05D005707 1.3e-75 287.7 377 40.6
Prupe.1G249900 Prunus persica HOM05D004907 ORTHO05D005707 1.7e-75 287.3 372 43.8
TWI36G0219 Tripterygium wilfordii HOM05D004907 ORTHO05D005707 2.2e-75 287.0 385 43.9
Gohir.A05G313700 Gossypium hirsutum HOM05D004907 ORTHO05D005707 6.5e-75 285.4 391 40.4
PGSC0003DMG400013488 Solanum tuberosum HOM05D004907 ORTHO05D005707 6.5e-75 285.4 376 41.2
Thecc.02G254700 Theobroma cacao HOM05D004907 ORTHO05D005707 8.5e-75 285.0 370 42.7
FAN17G0584 Fragaria x ananassa HOM05D004907 ORTHO05D005707 1.1e-74 284.6 381 42.0
QL03p059196 Quercus lobata HOM05D004907 ORTHO05D005707 1.9e-74 283.9 371 42.0
FAN22G1867 Fragaria x ananassa HOM05D004907 ORTHO05D005707 5.5e-74 282.3 384 41.4
Nitab4.5_0000338g0040 Nicotiana tabacum HOM05D004907 ORTHO05D005707 5.5e-74 282.3 383 41.0
Sopen05g001160 Solanum pennellii HOM05D004907 ORTHO05D005707 5.5e-74 282.3 377 40.8
Atru.chr11.2072 Acer truncatum HOM05D004907 ORTHO05D005707 7.2e-74 282.0 355 44.5
FAN12G3344 Fragaria x ananassa HOM05D004907 ORTHO05D005707 9.4e-74 281.6 385 41.0
Lsat_1_v5_gn_8_154601 Lactuca sativa HOM05D004907 ORTHO05D005707 1.2e-73 281.2 375 42.9
FvH4_4g32970 Fragaria vesca HOM05D004907 ORTHO05D005707 2.7e-73 280.0 389 40.9
Lj6P808T27 Lonicera japonica HOM05D004907 ORTHO05D005707 4.7e-73 279.3 371 43.9
Nitab4.5_0015209g0010 Nicotiana tabacum HOM05D004907 ORTHO05D005707 4.7e-73 279.3 374 41.7
DCAR_007072 Daucus carota HOM05D004907 ORTHO05D005707 6.1e-73 278.9 370 42.7
Sc04g0009300 Simmondsia chinensis HOM05D004907 ORTHO05D005707 2.3e-72 276.9 372 43.5
Psat2g106360 Pisum sativum HOM05D004907 ORTHO05D005707 4.0e-72 276.2 377 42.2
Psat5g210760 Pisum sativum HOM05D004907 ORTHO05D005707 4.0e-72 276.2 376 41.2
Lj4g0000696 Lotus japonicus HOM05D004907 ORTHO05D005707 6.8e-72 275.4 380 43.4
Lsat_1_v5_gn_3_28580 Lactuca sativa HOM05D004907 ORTHO05D005707 1.2e-71 274.6 371 40.4
Solyc05g005150.1 Solanum lycopersicum HOM05D004907 ORTHO05D005707 1.2e-71 274.6 377 40.1
Cfa009182 Carpinus fangiana HOM05D004907 ORTHO05D005707 2.6e-71 273.5 380 39.7
MD13G1095300 Malus domestica HOM05D004907 ORTHO05D005707 2.6e-71 273.5 374 42.5
Lalb_Chr05g0216711 Lupinus albus HOM05D004907 ORTHO05D005707 7.5e-71 271.9 369 39.8
MD16G1096500 Malus domestica HOM05D004907 ORTHO05D005707 2.8e-70 270.0 367 44.1
Glyma.08G284600 Glycine max HOM05D004907 ORTHO05D005707 3.7e-70 269.6 383 42.3
MD16G1096400 Malus domestica HOM05D004907 ORTHO05D005707 4.8e-70 269.2 384 43.0
TPR.G24774 Trifolium pratense HOM05D004907 ORTHO05D005707 1.4e-69 267.7 377 39.5
Lj2g0022644 Lotus japonicus HOM05D004907 ORTHO05D005707 4.1e-69 266.2 377 41.9
Potri.010G042900 Populus trichocarpa HOM05D004907 ORTHO05D005707 4.1e-69 266.2 412 39.8
Hma1.2p1_0160F.1_g071120 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 5.4e-69 265.8 386 39.1
Thecc.02G254800 Theobroma cacao HOM05D004907 ORTHO05D005707 5.4e-69 265.8 368 42.4
AUR62014077 Chenopodium quinoa HOM05D004907 ORTHO05D005707 7.0e-69 265.4 370 39.2
Nn4g22709 Nelumbo nucifera HOM05D004907 ORTHO05D005707 9.1e-69 265.0 387 39.3
Gohir.A03G137500 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.2e-68 264.6 372 40.1
Gorai.009G337200 Gossypium raimondii HOM05D004907 ORTHO05D005707 1.2e-68 264.6 391 38.9
VMungo1215G1811 Vigna mungo HOM05D004907 ORTHO05D005707 1.2e-68 264.6 373 40.5
Medtr8g069800 Medicago truncatula HOM05D004907 ORTHO05D005707 2.0e-68 263.8 376 40.4
TAR374G1110 Trochodendron aralioides HOM05D004907 ORTHO05D005707 2.0e-68 263.8 371 39.6
Gorai.005G180700 Gossypium raimondii HOM05D004907 ORTHO05D005707 3.5e-68 263.1 371 39.4
Rhsim12G0042700 Rhododendron simsii HOM05D004907 ORTHO05D005707 3.5e-68 263.1 394 40.4
Cc11_g15390 Coffea canephora HOM05D004907 ORTHO05D005707 4.5e-68 262.7 374 40.6
Glyma.01G028800 Glycine max HOM05D004907 ORTHO05D005707 4.5e-68 262.7 381 42.0
PGR119G0630 Punica granatum HOM05D004907 ORTHO05D005707 1.0e-67 261.5 370 42.2
Medtr5g043750 Medicago truncatula HOM05D004907 ORTHO05D005707 8.6e-67 258.5 374 39.0
Sabra10G0024600 Salix brachista HOM05D004907 ORTHO05D005707 1.1e-66 258.1 411 40.4
Glyma.02G036400 Glycine max HOM05D004907 ORTHO05D005707 1.9e-66 257.3 382 41.1
Glyma.18G141000 Glycine max HOM05D004907 ORTHO05D005707 1.9e-66 257.3 379 41.7
Ca_03137_v3 Cicer arietinum L. HOM05D004907 ORTHO05D005707 4.2e-66 256.1 378 39.2
MSTRG.7910 Avicennia marina HOM05D004907 ORTHO05D005707 5.5e-66 255.8 369 40.9
AUR62005416 Chenopodium quinoa HOM05D004907 ORTHO05D005707 7.2e-66 255.4 370 37.8
Medtr5g033880 Medicago truncatula HOM05D004907 ORTHO05D005707 1.6e-65 254.2 375 38.9
Gohir.A01G160100 Gossypium hirsutum HOM05D004907 ORTHO05D005707 4.7e-65 252.7 316 44.9
PGR102G3060 Punica granatum HOM05D004907 ORTHO05D005707 6.1e-65 252.3 392 40.6
MSTRG.2405 Avicennia marina HOM05D004907 ORTHO05D005707 4.0e-64 249.6 373 39.9
Hma1.2p1_0223F.1_g094330 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 6.8e-64 248.8 380 40.3
Phvul.003G062300 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 4.4e-63 246.1 394 39.3
Aqoxy3G02876 Aquilegia oxysepala HOM05D004907 ORTHO05D005707 1.7e-62 244.2 379 38.5
Eucgr.H02548 Eucalyptus grandis HOM05D004907 ORTHO05D005707 1.7e-62 244.2 380 38.2
Oeu001729.1 Olea europaea HOM05D004907 ORTHO05D005707 1.7e-62 244.2 365 38.1
Eucgr.H02549 Eucalyptus grandis HOM05D004907 ORTHO05D005707 2.8e-62 243.4 371 39.1
PSO170G6868 Papaver somniferum HOM05D004907 ORTHO05D005707 8.3e-62 241.9 372 38.4
PSO441G0001 Papaver somniferum HOM05D004907 ORTHO05D005707 8.3e-62 241.9 372 38.4
PSO063G4965 Papaver somniferum HOM05D004907 ORTHO05D005707 1.1e-61 241.5 368 39.4
Migut.L01466 Erythranthe guttata HOM05D004907 ORTHO05D005707 7.0e-61 238.8 370 39.2
PSO782G1891 Papaver somniferum HOM05D004907 ORTHO05D005707 7.0e-61 238.8 374 38.8
PSO144G0054 Papaver somniferum HOM05D004907 ORTHO05D005707 9.2e-61 238.4 373 38.1
PSO170G1656 Papaver somniferum HOM05D004907 ORTHO05D005707 9.2e-61 238.4 379 36.1
ClCG05G025500 Citrullus lanatus HOM05D004907 ORTHO05D005707 1.6e-60 237.7 377 36.6
Oeu056415.1 Olea europaea HOM05D004907 ORTHO05D005707 7.8e-60 235.3 369 37.9
HanXRQChr06g0173591 Helianthus annuus HOM05D004907 ORTHO05D005707 1.0e-59 235.0 375 37.9
Actinidia27794 Actinidia chinensis HOM05D004907 ORTHO05D005707 3.8e-59 233.0 369 39.8
Rhsim12G0113900 Rhododendron simsii HOM05D004907 ORTHO05D005707 2.5e-58 230.3 378 38.1
ClCG08G017860 Citrullus lanatus HOM05D002061 ORTHO05D005707 2.1e-57 227.3 398 38.9
MELO3C011980.2 Cucumis melo HOM05D004907 ORTHO05D005707 2.1e-57 227.3 377 35.8
SalBow2G1155 Salvia bowleyana HOM05D004907 ORTHO05D005707 4.7e-57 226.1 381 37.0
Sed0027759 Sechium edule HOM05D004907 ORTHO05D005707 1.4e-56 224.6 370 34.6
CDE06G1150 Ceratophyllum demersum HOM05D004907 ORTHO05D005707 3.0e-56 223.4 330 38.5
CsaV3_5G031400 Cucumis sativus L. HOM05D004907 ORTHO05D005707 3.0e-56 223.4 377 35.3
Oeu056417.1 Olea europaea HOM05D004907 ORTHO05D005707 5.2e-56 222.6 376 37.0
Gohir.D05G315200 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.5e-55 221.1 230 47.8
SalBow3G2985 Salvia bowleyana HOM05D004907 ORTHO05D005707 3.4e-55 219.9 372 36.3
Sed0025966 Sechium edule HOM05D002061 ORTHO05D005707 9.8e-55 218.4 370 35.1
Phvul.002G064500 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 1.7e-54 217.6 253 46.6
Haze_12216 Corylus avellana HOM05D004907 ORTHO05D005707 1.4e-53 214.5 371 34.2
Dinv15270 Davidia involucrata HOM05D004907 ORTHO05D005707 1.2e-52 211.5 265 42.3
Oeu055460.1 Olea europaea HOM05D004907 ORTHO05D005707 6.6e-51 205.7 376 36.2
Hund25371 Selenicereus undatus HOM05D004907 ORTHO05D005707 7.3e-50 202.2 371 35.0
GSVIVG01013786001 Vitis vinifera HOM05D004907 ORTHO05D005707 1.6e-49 201.1 265 40.8
COL.COLO4_24215 Corchorus olitorius HOM05D004907 ORTHO05D005707 2.8e-49 200.3 266 39.8
Peaxi162Scf00158g00003 Petunia axillaris HOM05D004907 ORTHO05D005707 1.8e-48 197.6 275 40.0
Ah.03g132850 Amaranthus hybridus HOM05D000168 ORTHO05D000811 2.3e-48 197.2 340 35.0
Lalb_Chr09g0326261 Lupinus albus HOM05D004907 ORTHO05D005707 5.8e-47 192.6 369 32.8
SGA_v2.0_scaffold63G21708 Striga asiatica HOM05D004907 ORTHO05D005707 1.7e-46 191.0 370 34.9
Actinidia08149 Actinidia chinensis HOM05D004907 ORTHO05D005707 1.4e-45 188.0 192 49.0
Oeu056728.1 Olea europaea HOM05D004907 ORTHO05D005707 5.4e-45 186.0 290 38.6
ATR1091G111 Amborella trichopoda HOM05D004907 ORTHO05D005707 2.6e-39 167.2 373 31.6
PSO478G2945 Papaver somniferum HOM05D004907 ORTHO05D005707 4.4e-39 166.4 191 46.6
PSO357G0455 Papaver somniferum HOM05D004907 ORTHO05D005707 2.4e-37 160.6 224 39.7
Nn3g16812 Nelumbo nucifera HOM05D004907 ORTHO05D005707 3.3e-34 150.2 207 41.5
EL10Ac6g13709 Beta vulgaris HOM05D004907 ORTHO05D005707 2.1e-33 147.5 223 36.3
Zm00001eb155550 Zea mays HOM05D004907 ORTHO05D005707 3.8e-30 136.7 394 30.2
Os09g0292900 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 6.6e-27 125.9 393 27.7
HPP92_008048 Vanilla planifolia HOM05D004907 ORTHO05D005707 2.5e-26 124.0 369 27.4
COL.COLO4_24217 Corchorus olitorius HOM05D004907 ORTHO05D005707 7.3e-26 122.5 209 37.3
Actinidia09494 Actinidia chinensis HOM05D007853 ORTHO05D009873 1.5e-23 114.8 390 27.7
BcaC06g35750 Brassica carinata HOM05D007853 ORTHO05D009873 4.4e-23 113.2 380 29.2
BolC7t41605H Brassica oleracea HOM05D007853 ORTHO05D009873 4.4e-23 113.2 380 29.2
C07p11280 Brassica napus HOM05D007853 ORTHO05D009873 5.8e-23 112.8 380 29.2
CAN.G771.60 Capsicum annuum HOM05D007853 ORTHO05D009873 1.7e-22 111.3 385 27.8
ATR0787G102 Amborella trichopoda HOM05D007853 ORTHO05D009873 3.8e-22 110.2 374 27.0
Sopen06g034930 Solanum pennellii HOM05D007853 ORTHO05D009873 3.8e-22 110.2 392 27.6
Mapoly0119s0024 Marchantia polymorpha HOM05D007853 ORTHO05D009873 1.1e-21 108.6 388 28.4
SEGI_08843 Sequoiadendron giganteum HOM05D007853 ORTHO05D009873 1.4e-21 108.2 241 31.1
A07p07510 Brassica napus HOM05D007853 ORTHO05D009873 1.9e-21 107.8 380 28.7
BraA07t28542Z Brassica rapa HOM05D007853 ORTHO05D009873 1.9e-21 107.8 380 28.7
Os02g0465600 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 1.9e-21 107.8 221 32.6
MBI10_g16828_MAGBIO Magnolia biondii HOM05D007853 ORTHO05D009873 5.4e-21 106.3 380 27.4
Solyc06g083550.1 Solanum lycopersicum HOM05D007853 ORTHO05D009873 7.1e-21 105.9 392 27.3
Cfa002555 Carpinus fangiana HOM05D007853 ORTHO05D009873 9.3e-21 105.5 357 30.3
Sp3g22500 Schrenkiella parvula HOM05D007853 ORTHO05D009873 1.6e-20 104.8 383 27.7
MD13G1280300 Malus domestica HOM05D004907 ORTHO05D005707 2.1e-20 104.4 197 33.0
TPR.G21504 Trifolium pratense HOM05D004907 ORTHO05D005707 2.7e-20 104.0 154 39.0
BcaB06g26693 Brassica carinata HOM05D007853 ORTHO05D009873 4.6e-20 103.2 380 28.2
Mapoly0119s0021 Marchantia polymorpha HOM05D007853 ORTHO05D009873 4.6e-20 103.2 364 25.3
Pp3c10_6380 Physcomitrium patens HOM05D007853 ORTHO05D009873 6.0e-20 102.8 397 26.7
TPR.G15291 Trifolium pratense HOM05D007853 ORTHO05D009873 1.3e-19 101.7 371 28.0
CiPaw.04G106700 Carya illinoinensis HOM05D007853 ORTHO05D009873 8.7e-19 99.0 385 28.6
Medtr0197s0070 Medicago truncatula HOM05D007853 ORTHO05D009873 1.9e-18 97.8 376 26.9
Medtr7g059040 Medicago truncatula HOM05D007853 ORTHO05D009873 1.9e-18 97.8 376 26.9
Os01g0704300 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 1.9e-18 97.8 265 29.1
Thhalv10002571m.g Eutrema salsugineum HOM05D007853 ORTHO05D009873 3.3e-18 97.1 383 26.6
Ca_07539_v3 Cicer arietinum L. HOM05D007853 ORTHO05D009873 9.6e-18 95.5 377 26.8
Psat3g143800 Pisum sativum HOM05D007853 ORTHO05D009873 2.1e-17 94.4 378 26.2
HanXRQChr01g0014671 Helianthus annuus HOM05D007853 ORTHO05D009873 3.1e-16 90.5 400 25.2
AL3G40490 Arabidopsis lyrata HOM05D007853 ORTHO05D009873 1.2e-15 88.6 400 25.0
CARHR101120 Cardamine hirsuta HOM05D007853 ORTHO05D009873 2.0e-15 87.8 387 25.6
Carub.0003s2515 Capsella rubella HOM05D007853 ORTHO05D009873 2.6e-15 87.4 401 25.9
Glyma.18G173200 Glycine max HOM05D007853 ORTHO05D009873 2.6e-15 87.4 387 24.8
Pp3c2_14180 Physcomitrium patens HOM05D007853 ORTHO05D009873 3.4e-15 87.0 386 26.7
unitig_8.g2924 Utricularia gibba HOM05D004907 ORTHO05D005707 1.7e-14 84.7 118 42.4
Glyma.08G356100 Glycine max HOM05D007853 ORTHO05D009873 2.9e-14 84.0 380 24.7
VMungo1383G0232 Vigna mungo HOM05D007853 ORTHO05D009873 1.4e-13 81.6 391 24.6
unitig_8.g2923 Utricularia gibba HOM05D004907 ORTHO05D005707 3.9e-11 73.6 91 44.0
Nn2g13938 Nelumbo nucifera HOM05D004907 ORTHO05D005707 5.1e-11 73.2 93 40.9
Nn2g13937 Nelumbo nucifera HOM05D004907 ORTHO05D005707 1.5e-07 61.6 76 44.7


User provided reference genes

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