Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR023070 Cardamine hirsuta HOM05D006403 ORTHO05D008130 6.7e-157 557.4 293 100.0
Sp1g20210 Schrenkiella parvula HOM05D006403 ORTHO05D008130 7.9e-142 507.3 296 90.5
AL1G36240 Arabidopsis lyrata HOM05D006403 ORTHO05D008130 1.9e-140 502.7 293 90.8
AT1G22700 Arabidopsis thaliana HOM05D006403 ORTHO05D008130 4.3e-140 501.5 293 90.8
BraA09t39690Z Brassica rapa HOM05D006403 ORTHO05D008130 2.5e-132 475.7 298 86.2
C05p21830 Brassica napus HOM05D006403 ORTHO05D008130 3.3e-132 475.3 298 86.6
BolC5t30876H Brassica oleracea HOM05D006403 ORTHO05D008130 5.7e-132 474.6 298 86.2
A09p42040 Brassica napus HOM05D006403 ORTHO05D008130 1.3e-131 473.4 298 85.9
A07p14250 Brassica napus HOM05D006403 ORTHO05D008130 3.7e-131 471.9 294 86.1
BcaB03g14190 Brassica carinata HOM05D006403 ORTHO05D008130 1.4e-130 469.9 296 86.5
Aa31LG7G6600 Aethionema arabicum HOM05D006403 ORTHO05D008130 1.8e-130 469.5 321 80.7
BraA07t29182Z Brassica rapa HOM05D006403 ORTHO05D008130 4.7e-126 454.9 301 83.4
BolC7t42628H Brassica oleracea HOM05D006403 ORTHO05D008130 1.0e-120 437.2 303 80.2
C07p20970 Brassica napus HOM05D006403 ORTHO05D008130 5.7e-116 421.4 245 90.2
THA.LOC104800111 Tarenaya hassleriana HOM05D006403 ORTHO05D008130 2.6e-108 396.0 303 73.9
Carub.0001s2222 Capsella rubella HOM05D006403 ORTHO05D008130 8.3e-107 391.0 214 94.9
Thhalv10008318m.g Eutrema salsugineum HOM05D006403 ORTHO05D008130 9.1e-106 387.5 212 94.8
BcaC06g34984 Brassica carinata HOM05D006403 ORTHO05D008130 3.4e-100 369.0 297 72.1
BcaB03g14188 Brassica carinata HOM05D006403 ORTHO05D008130 1.7e-99 366.7 302 73.2
Duzib177G0036 Durio zibethinus HOM05D006403 ORTHO05D008130 2.3e-93 346.3 254 75.6
Gohir.A13G121700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 1.5e-92 343.6 338 62.7
Ciclev10001887m.g Citrus clementina HOM05D006403 ORTHO05D008130 7.5e-92 341.3 262 72.1
COL.COLO4_36653 Corchorus olitorius HOM05D006403 ORTHO05D008130 7.5e-92 341.3 222 80.6
CsaV3_7G024130 Cucumis sativus L. HOM05D006403 ORTHO05D008130 1.3e-91 340.5 231 79.7
GSVIVG01034503001 Vitis vinifera HOM05D006403 ORTHO05D008130 2.2e-91 339.7 263 71.1
Gohir.D13G125700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 4.9e-91 338.6 338 62.4
Gorai.013G140800 Gossypium raimondii HOM05D006403 ORTHO05D008130 4.9e-91 338.6 338 62.4
Thecc.08G202600 Theobroma cacao HOM05D006403 ORTHO05D008130 4.9e-91 338.6 230 80.0
MELO3C023667.2 Cucumis melo HOM05D006403 ORTHO05D008130 8.3e-91 337.8 231 78.8
ClCG09G010420 Citrullus lanatus HOM05D006403 ORTHO05D008130 1.4e-90 337.0 231 78.8
Cfa018202 Carpinus fangiana HOM05D006403 ORTHO05D008130 4.1e-90 335.5 222 77.9
Aqoxy7G00855 Aquilegia oxysepala HOM05D006403 ORTHO05D008130 1.6e-89 333.6 206 80.6
Atru.chr13.1807 Acer truncatum HOM05D006403 ORTHO05D008130 2.0e-89 333.2 264 69.3
Atru.chr13.1815 Acer truncatum HOM05D006403 ORTHO05D008130 2.0e-89 333.2 264 69.3
Manes.18G099900 Manihot esculenta HOM05D006403 ORTHO05D008130 2.0e-89 333.2 230 79.1
Potri.013G114500 Populus trichocarpa HOM05D006403 ORTHO05D008130 2.0e-89 333.2 329 60.5
PGR042G3834 Punica granatum HOM05D006403 ORTHO05D008130 3.5e-89 332.4 222 80.2
arahy.Tifrunner.gnm1.ann1.RC57KJ Arachis hypogaea HOM05D006403 ORTHO05D008130 4.5e-89 332.0 221 79.2
Haze_17907 Corylus avellana HOM05D006403 ORTHO05D008130 5.9e-89 331.6 222 77.0
ECA233G3842 Erigeron canadensis HOM05D006403 ORTHO05D008130 7.8e-89 331.3 267 67.0
CANSAT78G0580 Cannabis sativa HOM05D006403 ORTHO05D008130 1.0e-88 330.9 246 72.8
Lalb_Chr19g0129801 Lupinus albus HOM05D006403 ORTHO05D008130 1.0e-88 330.9 303 60.4
Hund27413 Selenicereus undatus HOM05D006403 ORTHO05D008130 1.3e-88 330.5 225 77.3
TWI32G0485 Tripterygium wilfordii HOM05D006403 ORTHO05D008130 1.3e-88 330.5 332 59.9
CSS0028864 Camellia sinensis var. sinensis HOM05D006403 ORTHO05D008130 1.7e-88 330.1 309 63.1
CiPaw.16G062500 Carya illinoinensis HOM05D006403 ORTHO05D008130 1.7e-88 330.1 222 78.4
Nn8g40759 Nelumbo nucifera HOM05D006403 ORTHO05D008130 2.3e-88 329.7 207 82.1
Oeu017876.2 Olea europaea HOM05D006403 ORTHO05D008130 2.3e-88 329.7 282 66.0
Potri.019G085200 Populus trichocarpa HOM05D006403 ORTHO05D008130 5.0e-88 328.6 250 71.6
RcHm_v2.0_Chr3g0495761 Rosa chinensis HOM05D006403 ORTHO05D008130 6.6e-88 328.2 260 69.6
Sc23g0004870 Simmondsia chinensis HOM05D006403 ORTHO05D008130 6.6e-88 328.2 248 73.0
arahy.Tifrunner.gnm1.ann1.3A12IQ Arachis hypogaea HOM05D006403 ORTHO05D008130 8.6e-88 327.8 262 67.6
AUR62013765 Chenopodium quinoa HOM05D006403 ORTHO05D008130 1.1e-87 327.4 286 65.0
Peaxi162Scf00495g00011 Petunia axillaris HOM05D006403 ORTHO05D008130 1.1e-87 327.4 309 63.8
Sed0020052 Sechium edule HOM05D006403 ORTHO05D008130 1.1e-87 327.4 229 76.9
Dinv41688 Davidia involucrata HOM05D006403 ORTHO05D008130 1.5e-87 327.0 273 67.0
Lalb_Chr01g0010051 Lupinus albus HOM05D006403 ORTHO05D008130 2.5e-87 326.2 222 75.2
Nitab4.5_0000159g0220 Nicotiana tabacum HOM05D006403 ORTHO05D008130 3.3e-87 325.9 204 80.9
Rhsim08G0049700 Rhododendron simsii HOM05D006403 ORTHO05D008130 3.3e-87 325.9 206 82.0
Lsat_1_v5_gn_1_12940 Lactuca sativa HOM05D006403 ORTHO05D008130 9.5e-87 324.3 306 61.8
AUR62023390 Chenopodium quinoa HOM05D006403 ORTHO05D008130 1.6e-86 323.6 253 69.2
PSO732G0029 Papaver somniferum HOM05D006403 ORTHO05D008130 1.6e-86 323.6 202 80.7
HanXRQChr02g0040151 Helianthus annuus HOM05D006403 ORTHO05D008130 2.1e-86 323.2 212 78.3
MD14G1011000 Malus domestica HOM05D006403 ORTHO05D008130 4.7e-86 322.0 221 76.9
SGA_v2.0_scaffold24G10549 Striga asiatica HOM05D006403 ORTHO05D008130 4.7e-86 322.0 206 81.6
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 4.7e-86 322.0 206 80.6
PSO675G8117 Papaver somniferum HOM05D006403 ORTHO05D008130 6.1e-86 321.6 219 76.3
Actinidia29416 Actinidia chinensis HOM05D006403 ORTHO05D008130 1.4e-85 320.5 309 61.5
FvH4_1g29740 Fragaria vesca HOM05D006403 ORTHO05D008130 1.4e-85 320.5 221 76.5
FAN19G1279 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.4e-85 320.5 221 76.5
CAN.G61.29 Capsicum annuum HOM05D006403 ORTHO05D008130 1.8e-85 320.1 204 80.9
QL02p034075 Quercus lobata HOM05D006403 ORTHO05D008130 1.8e-85 320.1 221 76.5
Solyc11g017200.2 Solanum lycopersicum HOM05D006403 ORTHO05D008130 3.1e-85 319.3 253 67.6
Sopen11g009110 Solanum pennellii HOM05D006403 ORTHO05D008130 3.1e-85 319.3 204 79.9
MSTRG.25437 Avicennia marina HOM05D006403 ORTHO05D008130 4.0e-85 318.9 206 80.6
Duzib116G0580 Durio zibethinus HOM05D006403 ORTHO05D008130 4.0e-85 318.9 224 77.7
PGSC0003DMG400009235 Solanum tuberosum HOM05D006403 ORTHO05D008130 4.0e-85 318.9 305 59.7
MD12G1013600 Malus domestica HOM05D006403 ORTHO05D008130 5.2e-85 318.5 221 76.0
EL10Ac1g00740 Beta vulgaris HOM05D006403 ORTHO05D008130 6.8e-85 318.2 224 74.1
Lj7A297T43 Lonicera japonica HOM05D006403 ORTHO05D008130 8.9e-85 317.8 209 78.5
Cc00_g04840 Coffea canephora HOM05D006403 ORTHO05D008130 1.2e-84 317.4 268 66.8
FAN23G0108 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.2e-84 317.4 230 73.5
Prupe.7G018000 Prunus persica HOM05D006403 ORTHO05D008130 1.2e-84 317.4 222 75.7
Phvul.007G090400 Phaseolus vulgaris HOM05D006403 ORTHO05D008130 2.6e-84 316.2 221 75.6
FAN26G2688 Fragaria x ananassa HOM05D006403 ORTHO05D008130 3.4e-84 315.8 221 75.6
Lj5g0000123 Lotus japonicus HOM05D006403 ORTHO05D008130 3.4e-84 315.8 222 73.9
Eucgr.F02626 Eucalyptus grandis HOM05D006403 ORTHO05D008130 1.3e-83 313.9 312 61.9
Sabra13G0096800 Salix brachista HOM05D005981 ORTHO05D008130 1.7e-83 313.5 220 75.9
FAN28G0939 Fragaria x ananassa HOM05D006403 ORTHO05D008130 2.2e-83 313.2 294 62.6
Glyma.10G215300 Glycine max HOM05D006403 ORTHO05D008130 2.2e-83 313.2 221 74.2
Glyma.20G176400 Glycine max HOM05D006403 ORTHO05D008130 2.2e-83 313.2 221 74.2
ATR1127G194 Amborella trichopoda HOM05D006403 ORTHO05D008130 2.9e-83 312.8 239 70.3
Hma1.2p1_0072F.1_g038220 Hydrangea macrophylla HOM05D006403 ORTHO05D008130 2.9e-83 312.8 193 82.9
Medtr1g096230 Medicago truncatula HOM05D006403 ORTHO05D008130 2.9e-83 312.8 222 73.9
SalBow7G4031 Salvia bowleyana HOM05D006403 ORTHO05D008130 2.9e-83 312.8 206 78.6
Ca_10605_v3 Cicer arietinum L. HOM05D006403 ORTHO05D008130 3.7e-83 312.4 220 74.1
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 1.9e-82 310.1 294 61.6
Psat6g186640 Pisum sativum HOM05D006403 ORTHO05D008130 2.4e-82 309.7 220 73.6
MBI17_g12885_MAGBIO Magnolia biondii HOM05D006403 ORTHO05D008130 7.0e-82 308.1 237 70.0
HPP92_025360 Vanilla planifolia HOM05D006403 ORTHO05D008130 1.7e-80 303.5 225 70.7
CDE07G1616 Ceratophyllum demersum HOM05D006403 ORTHO05D008130 2.3e-80 303.1 183 83.1
Migut.C01242 Erythranthe guttata HOM05D006403 ORTHO05D008130 2.3e-80 303.1 204 74.0
Oeu000555.1 Olea europaea HOM05D006403 ORTHO05D008130 2.3e-80 303.1 206 77.7
vmacro18286 Vaccinium macrocarpon HOM05D006403 ORTHO05D008130 8.0e-78 294.7 289 59.2
Cpa.g.sc66.55 Carica papaya HOM05D006403 ORTHO05D008130 4.1e-74 282.3 166 86.1
unitig_747.g21467 Utricularia gibba HOM05D006403 ORTHO05D008130 1.4e-69 267.3 194 72.2
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 4.0e-69 265.8 206 70.9
SEGI_04324 Sequoiadendron giganteum HOM05D006403 ORTHO05D008130 4.4e-68 262.3 263 53.2
Zm00001eb320270 Zea mays HOM05D006403 ORTHO05D008130 1.3e-67 260.8 206 69.4
AagrBONN_evm.TU.Sc2ySwM_362.2277 Anthoceros agrestis HOM05D006403 ORTHO05D008130 1.6e-62 243.8 211 59.2
Pp3c2_18600 Physcomitrium patens HOM05D006403 ORTHO05D008130 4.0e-61 239.2 222 55.9
TPR.G1762 Trifolium pratense HOM05D006403 ORTHO05D008130 5.4e-58 228.8 144 79.2
Pp3c1_20680 Physcomitrium patens HOM05D006403 ORTHO05D008130 6.4e-51 205.3 162 61.7
CBR_g38402 Chara braunii HOM05D006403 ORTHO05D008130 1.1e-50 204.5 208 52.9
Mapoly0015s0041 Marchantia polymorpha HOM05D006403 ORTHO05D008130 1.4e-50 204.1 186 56.5
SMO118G0451 Selaginella moellendorffii HOM05D006403 ORTHO05D008130 6.6e-48 195.3 178 53.9
Cre12.g524300 Chlamydomonas reinhardtii HOM05D006403 ORTHO05D008130 5.3e-45 185.7 209 46.9
MCO16G319 Micromonas commoda HOM05D006403 ORTHO05D008130 5.8e-44 182.2 177 52.5
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 5.1e-40 169.1 112 80.4
RcHm_v2.0_Chr7g0219671 Rosa chinensis HOM05D006403 ORTHO05D008130 7.6e-36 155.2 144 61.1
RcHm_v2.0_Chr2g0092511 Rosa chinensis HOM05D006403 ORTHO05D008130 1.6e-30 137.5 159 53.5
PRCOL_00002033 Prasinoderma coloniale HOM05D006403 ORTHO05D008130 6.1e-25 119.0 149 38.9
RcHm_v2.0_Chr7g0199541 Rosa chinensis HOM05D006403 ORTHO05D008130 1.5e-20 104.4 65 80.0
Os08g0347500 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 1.8e-16 90.9 53 84.9
TPR.G20530 Trifolium pratense HOM05D006403 ORTHO05D008130 3.9e-16 89.7 76 65.8
Hma1.2p1_0072F.1_g038240 Hydrangea macrophylla HOM05D006403 ORTHO05D228046 1.7e-14 84.3 49 89.8


User provided reference genes

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