Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR022690 Cardamine hirsuta HOM05D002925 ORTHO05D003247 5.7e-210 734.2 419 100.0
AT1G22310 Arabidopsis thaliana HOM05D002925 ORTHO05D003247 8.7e-102 374.8 337 68.5
Carub.0001s2186 Capsella rubella HOM05D002925 ORTHO05D003247 4.1e-99 365.9 344 67.2
AL1G35760 Arabidopsis lyrata HOM05D002925 ORTHO05D003247 4.5e-98 362.5 341 69.2
Thhalv10007200m.g Eutrema salsugineum HOM05D002925 ORTHO05D003247 6.7e-94 348.6 345 61.2
Sp1g19810 Schrenkiella parvula HOM05D002925 ORTHO05D003247 2.6e-93 346.7 348 59.5
BcaC06g34950 Brassica carinata HOM05D002925 ORTHO05D003247 1.5e-90 337.4 414 52.4
BolC7t42671H Brassica oleracea HOM05D000298 ORTHO05D003247 4.2e-80 302.8 343 54.8
C07p21440 Brassica napus HOM05D002925 ORTHO05D003247 3.3e-77 293.1 289 60.2
A07p14550 Brassica napus HOM05D002925 ORTHO05D003247 7.7e-74 282.0 316 55.1
BraA07t29201Z Brassica rapa HOM05D002925 ORTHO05D003247 7.7e-74 282.0 316 55.1
BcaB03g14218 Brassica carinata HOM05D002925 ORTHO05D003247 5.2e-62 242.7 285 52.3
Aa31LG7G6230 Aethionema arabicum HOM05D002925 ORTHO05D003247 1.7e-57 227.6 245 53.9
THA.LOC104800147 Tarenaya hassleriana HOM05D002925 ORTHO05D003247 7.0e-51 205.7 265 47.9
TWI56G0820 Tripterygium wilfordii HOM05D002925 ORTHO05D003247 1.1e-30 138.7 230 40.0
Dinv14338 Davidia involucrata HOM05D002925 ORTHO05D003247 3.1e-30 137.1 105 59.0
Lalb_Chr18g0060531 Lupinus albus HOM05D002925 ORTHO05D003247 6.8e-30 136.0 218 37.2
TAR625G1540 Trochodendron aralioides HOM05D002925 ORTHO05D003247 7.6e-29 132.5 240 37.1
Ciclev10000205m.g Citrus clementina HOM05D002925 ORTHO05D003247 9.9e-29 132.1 147 48.3
Nn1g05384 Nelumbo nucifera HOM05D002925 ORTHO05D003247 1.3e-28 131.7 115 53.0
Lalb_Chr15g0090391 Lupinus albus HOM05D002925 ORTHO05D003247 1.7e-28 131.3 233 34.8
HanXRQChr05g0145421 Helianthus annuus HOM05D002925 ORTHO05D003247 4.9e-28 129.8 98 58.2
MBI02_g35745_MAGBIO Magnolia biondii HOM05D002925 ORTHO05D003247 4.9e-28 129.8 188 41.0
HanXRQChr02g0043481 Helianthus annuus HOM05D002925 ORTHO05D003247 6.4e-28 129.4 222 36.5
TAR076G0002 Trochodendron aralioides HOM05D002925 ORTHO05D003247 6.4e-28 129.4 270 35.6
Aqoxy6G00762 Aquilegia oxysepala HOM05D002925 ORTHO05D003247 1.1e-27 128.6 111 56.8
ECA232G4158 Erigeron canadensis HOM05D002925 ORTHO05D003247 2.4e-27 127.5 182 39.6
PSO447G0391 Papaver somniferum HOM05D002925 ORTHO05D003247 2.4e-27 127.5 192 35.9
Prupe.8G062800 Prunus persica HOM05D002925 ORTHO05D003247 2.4e-27 127.5 173 42.2
CiPaw.07G178900 Carya illinoinensis HOM05D002925 ORTHO05D003247 3.2e-27 127.1 108 54.6
Cc10_g07100 Coffea canephora HOM05D002925 ORTHO05D003247 7.1e-27 125.9 110 53.6
Solyc04g074250.3 Solanum lycopersicum HOM05D002925 ORTHO05D003247 7.1e-27 125.9 183 40.4
Sopen04g029390 Solanum pennellii HOM05D002925 ORTHO05D003247 7.1e-27 125.9 183 40.4
Peaxi162Scf00392g00416 Petunia axillaris HOM05D002925 ORTHO05D003247 9.2e-27 125.6 274 33.2
MBI02_g36599_MAGBIO Magnolia biondii HOM05D002925 ORTHO05D003247 1.2e-26 125.2 100 57.0
Potri.005G164100 Populus trichocarpa HOM05D002925 ORTHO05D003247 1.2e-26 125.2 189 39.2
GSVIVG01009040001 Vitis vinifera HOM05D002925 ORTHO05D003247 2.1e-26 124.4 137 50.4
DCAR_008741 Daucus carota HOM05D002925 ORTHO05D003247 2.7e-26 124.0 138 45.7
Nitab4.5_0006616g0010 Nicotiana tabacum HOM05D002925 ORTHO05D003247 2.7e-26 124.0 235 34.9
FAN15G3696 Fragaria x ananassa HOM05D002925 ORTHO05D003247 3.5e-26 123.6 104 51.9
FAN20G1033 Fragaria x ananassa HOM05D002925 ORTHO05D003247 3.5e-26 123.6 104 51.9
Lsat_1_v5_gn_1_3860 Lactuca sativa HOM05D002925 ORTHO05D003247 4.6e-26 123.2 105 46.7
Actinidia33129 Actinidia chinensis HOM05D002925 ORTHO05D003247 6.0e-26 122.9 211 39.3
MD05G1043400 Malus domestica HOM05D002925 ORTHO05D003247 6.0e-26 122.9 207 36.7
Nitab4.5_0000232g0050 Nicotiana tabacum HOM05D002925 ORTHO05D003247 6.0e-26 122.9 249 34.1
Potri.001G312900 Populus trichocarpa HOM05D002925 ORTHO05D003247 6.0e-26 122.9 246 35.0
AUR62027772 Chenopodium quinoa HOM05D002925 ORTHO05D003247 1.3e-25 121.7 109 49.5
RcHm_v2.0_Chr7g0243951 Rosa chinensis HOM05D002925 ORTHO05D003247 1.3e-25 121.7 256 35.2
arahy.Tifrunner.gnm1.ann1.VGLF4N Arachis hypogaea HOM05D002925 ORTHO05D003247 2.3e-25 120.9 97 53.6
MD10G1050700 Malus domestica HOM05D002925 ORTHO05D003247 2.3e-25 120.9 256 33.2
Phvul.006G205800 Phaseolus vulgaris HOM05D002925 ORTHO05D003247 2.3e-25 120.9 180 38.9
Sabra16G0197500 Salix brachista HOM05D002925 ORTHO05D003247 2.3e-25 120.9 189 39.2
HPP92_011216 Vanilla planifolia HOM05D002925 ORTHO05D003247 2.3e-25 120.9 95 56.8
FvH4_2g11920 Fragaria vesca HOM05D002925 ORTHO05D003247 3.0e-25 120.6 164 39.6
FAN24G2963 Fragaria x ananassa HOM05D002925 ORTHO05D003247 3.0e-25 120.6 164 39.6
TWI59G1115 Tripterygium wilfordii HOM05D002925 ORTHO05D003247 3.0e-25 120.6 168 42.3
CSS0032438 Camellia sinensis var. sinensis HOM05D002925 ORTHO05D003247 3.9e-25 120.2 178 38.8
Cfa013644 Carpinus fangiana HOM05D002925 ORTHO05D003247 3.9e-25 120.2 178 38.8
Cfa005642 Carpinus fangiana HOM05D002925 ORTHO05D003247 5.1e-25 119.8 166 43.4
Glyma.08G178400 Glycine max HOM05D002925 ORTHO05D003247 6.6e-25 119.4 112 48.2
Glyma.15G054200 Glycine max HOM05D002925 ORTHO05D003247 6.6e-25 119.4 168 39.3
RcHm_v2.0_Chr6g0271751 Rosa chinensis HOM05D002925 ORTHO05D003247 6.6e-25 119.4 243 33.3
CSS0049612 Camellia sinensis var. sinensis HOM05D002925 ORTHO05D003247 8.7e-25 119.0 166 39.8
Hund26967 Selenicereus undatus HOM05D002925 ORTHO05D003247 8.7e-25 119.0 196 36.2
Sc23g0000240 Simmondsia chinensis HOM05D002925 ORTHO05D003247 1.1e-24 118.6 104 54.8
Zm00001eb101320 Zea mays HOM05D002925 ORTHO05D003247 1.1e-24 118.6 98 55.1
Lj6g0016748 Lotus japonicus HOM05D002925 ORTHO05D003247 1.5e-24 118.2 211 37.9
Phvul.009G031600 Phaseolus vulgaris HOM05D002925 ORTHO05D003247 1.5e-24 118.2 209 36.4
FAN18G3145 Fragaria x ananassa HOM05D002925 ORTHO05D003247 1.9e-24 117.9 313 31.9
PGSC0003DMG400006417 Solanum tuberosum HOM05D002925 ORTHO05D003247 1.9e-24 117.9 276 33.0
Duzib093G1387 Durio zibethinus HOM05D002925 ORTHO05D003247 3.3e-24 117.1 235 33.6
SalBow7G1697 Salvia bowleyana HOM05D002925 ORTHO05D003247 3.3e-24 117.1 103 53.4
CiPaw.06G154400 Carya illinoinensis HOM05D002925 ORTHO05D003247 4.3e-24 116.7 253 33.6
Manes.07G032600 Manihot esculenta HOM05D002925 ORTHO05D003247 4.3e-24 116.7 214 35.5
Dinv24181 Davidia involucrata HOM05D002925 ORTHO05D003247 5.6e-24 116.3 97 53.6
Eucgr.I02657 Eucalyptus grandis HOM05D002925 ORTHO05D003247 7.3e-24 115.9 165 40.6
FvH4_5g37120 Fragaria vesca HOM05D002925 ORTHO05D003247 7.3e-24 115.9 313 31.9
Ah.05g169890 Amaranthus hybridus HOM05D002925 ORTHO05D003247 1.2e-23 115.2 100 53.0
Gohir.D01G114901 Gossypium hirsutum HOM05D002925 ORTHO05D003247 1.2e-23 115.2 231 34.2
Gorai.002G140700 Gossypium raimondii HOM05D002925 ORTHO05D003247 1.2e-23 115.2 235 34.9
QL11p021491 Quercus lobata HOM05D002925 ORTHO05D003247 1.2e-23 115.2 153 39.2
Gohir.A01G127000 Gossypium hirsutum HOM05D002925 ORTHO05D003247 1.6e-23 114.8 90 53.3
Ca_00141_v3 Cicer arietinum L. HOM05D002925 ORTHO05D003247 2.1e-23 114.4 240 34.2
Duzib116G0838 Durio zibethinus HOM05D002925 ORTHO05D003247 2.1e-23 114.4 232 34.5
Medtr2g009040 Medicago truncatula HOM05D002925 ORTHO05D003247 2.1e-23 114.4 245 33.5
RcHm_v2.0_Chr7g0238671 Rosa chinensis HOM05D002925 ORTHO05D003247 2.1e-23 114.4 92 53.3
Actinidia24000 Actinidia chinensis HOM05D002925 ORTHO05D003247 3.6e-23 113.6 166 37.3
THA.LOC104807164 Tarenaya hassleriana HOM05D002925 ORTHO05D003247 3.6e-23 113.6 99 53.5
GSVIVG01015726001 Vitis vinifera HOM05D002925 ORTHO05D003247 3.6e-23 113.6 134 42.5
TPR.G36116 Trifolium pratense HOM05D002925 ORTHO05D003247 4.7e-23 113.2 208 35.6
MSTRG.24975 Avicennia marina HOM05D002925 ORTHO05D003247 6.2e-23 112.8 226 35.0
Gohir.A03G174900 Gossypium hirsutum HOM05D002925 ORTHO05D003247 8.1e-23 112.5 211 36.5
Os08g0485700 Oryza sativa ssp. japonica HOM05D002925 ORTHO05D003247 8.1e-23 112.5 98 50.0
Sabra02G0076700 Salix brachista HOM05D002925 ORTHO05D003247 8.1e-23 112.5 114 49.1
Hma1.2p1_0522F.1_g171730 Hydrangea macrophylla HOM05D002925 ORTHO05D003247 1.4e-22 111.7 176 39.2
PSO541G2635 Papaver somniferum HOM05D002925 ORTHO05D003247 1.4e-22 111.7 102 49.0
ECA247G0600 Erigeron canadensis HOM05D002925 ORTHO05D003247 1.8e-22 111.3 225 32.4
FAN13G2209 Fragaria x ananassa HOM05D002925 ORTHO05D003247 1.8e-22 111.3 313 30.7
CAN.G523.55 Capsicum annuum HOM05D002925 ORTHO05D003247 3.1e-22 110.5 178 37.1
Psat1g216280 Pisum sativum HOM05D002925 ORTHO05D003247 3.1e-22 110.5 240 32.1
Gohir.D02G198200 Gossypium hirsutum HOM05D002925 ORTHO05D003247 4.0e-22 110.2 211 36.5
PGR031G1025 Punica granatum HOM05D002925 ORTHO05D003247 4.0e-22 110.2 94 55.3
SGA_v2.0_scaffold74G24580 Striga asiatica HOM05D002925 ORTHO05D003247 4.0e-22 110.2 191 38.7
COL.COLO4_29615 Corchorus olitorius HOM05D002925 ORTHO05D003247 5.2e-22 109.8 170 37.1
Nitab4.5_0000863g0180 Nicotiana tabacum HOM05D002925 ORTHO05D003247 5.2e-22 109.8 143 39.9
VMungo1309G2842 Vigna mungo HOM05D002925 ORTHO05D003247 5.2e-22 109.8 287 32.8
Ciclev10027826m.g Citrus clementina HOM05D002925 ORTHO05D003247 6.9e-22 109.4 155 42.6
Migut.C00133 Erythranthe guttata HOM05D002925 ORTHO05D003247 6.9e-22 109.4 193 38.3
FAN08G0410 Fragaria x ananassa HOM05D002925 ORTHO05D003247 6.9e-22 109.4 321 30.5
arahy.Tifrunner.gnm1.ann1.M5A3LZ Arachis hypogaea HOM05D002925 ORTHO05D003247 9.0e-22 109.0 117 44.4
Gorai.005G221500 Gossypium raimondii HOM05D002925 ORTHO05D003247 9.0e-22 109.0 211 36.0
Peaxi162Scf00001g00002 Petunia axillaris HOM05D002925 ORTHO05D003247 9.0e-22 109.0 177 35.6
CDE10G0684 Ceratophyllum demersum HOM05D002925 ORTHO05D003247 1.5e-21 108.2 98 50.0
FAN04G0469 Fragaria x ananassa HOM05D002925 ORTHO05D003247 1.5e-21 108.2 314 29.9
CDE10G0644 Ceratophyllum demersum HOM05D002925 ORTHO05D003247 2.6e-21 107.5 98 50.0
Dinv09022 Davidia involucrata HOM05D002925 ORTHO05D003247 2.6e-21 107.5 241 33.6
Cc02_g21380 Coffea canephora HOM05D002925 ORTHO05D003247 3.4e-21 107.1 101 48.5
Lalb_Chr11g0065401 Lupinus albus HOM05D002925 ORTHO05D003247 3.4e-21 107.1 156 39.7
PGSC0003DMG400012552 Solanum tuberosum HOM05D002925 ORTHO05D003247 3.4e-21 107.1 166 36.7
Sopen01g047830 Solanum pennellii HOM05D002925 ORTHO05D003247 4.4e-21 106.7 166 36.7
Thecc.02G136300 Theobroma cacao HOM05D002925 ORTHO05D003247 4.4e-21 106.7 170 37.1
EL10Ac1g01207 Beta vulgaris HOM05D002925 ORTHO05D003247 5.8e-21 106.3 140 40.0
SalBow5G0297 Salvia bowleyana HOM05D002925 ORTHO05D003247 5.8e-21 106.3 199 36.7
SalBow5G2582 Salvia bowleyana HOM05D002925 ORTHO05D003247 5.8e-21 106.3 199 36.7
Nitab4.5_0001619g0030 Nicotiana tabacum HOM05D002925 ORTHO05D003247 9.9e-21 105.5 140 35.7
Hund06376 Selenicereus undatus HOM05D002925 ORTHO05D003247 9.9e-21 105.5 162 37.0
Rhsim06G0081200 Rhododendron simsii HOM05D002925 ORTHO05D003247 1.3e-20 105.1 133 40.6
Glyma.06G102900 Glycine max HOM05D002925 ORTHO05D003247 2.2e-20 104.4 217 32.7
Oeu029761.1 Olea europaea HOM05D002925 ORTHO05D003247 2.2e-20 104.4 184 33.7
SGA_v2.0_scaffold14G07129 Striga asiatica HOM05D002925 ORTHO05D003247 2.2e-20 104.4 117 44.4
Glyma.04G101200 Glycine max HOM05D002925 ORTHO05D003247 2.9e-20 104.0 208 33.7
Solyc01g105330.3 Solanum lycopersicum HOM05D002925 ORTHO05D003247 2.9e-20 104.0 166 36.1
Atru.chr6.1160 Acer truncatum HOM05D002925 ORTHO05D003247 3.8e-20 103.6 252 34.9
MD08G1184300 Malus domestica HOM05D002925 ORTHO05D003247 6.4e-20 102.8 92 52.2
Os08g0485600 Oryza sativa ssp. japonica HOM05D002925 ORTHO05D003247 6.4e-20 102.8 167 35.3
MSTRG.20293 Avicennia marina HOM05D002925 ORTHO05D003247 8.4e-20 102.4 95 48.4
PSO531G0001 Papaver somniferum HOM05D002925 ORTHO05D003247 8.4e-20 102.4 192 31.2
Psat5g138880 Pisum sativum HOM05D002925 ORTHO05D003247 2.4e-19 100.9 110 46.4
VMungo0540G1175 Vigna mungo HOM05D002925 ORTHO05D003247 4.2e-19 100.1 241 31.1
arahy.Tifrunner.gnm1.ann1.8R41I4 Arachis hypogaea HOM05D002925 ORTHO05D003247 7.1e-19 99.4 94 46.8
Sc18g0006800 Simmondsia chinensis HOM05D002925 ORTHO05D003247 7.1e-19 99.4 273 29.7
Ah.01g022240 Amaranthus hybridus HOM05D002925 ORTHO05D003247 1.2e-18 98.6 95 47.4
arahy.Tifrunner.gnm1.ann1.66CWE3 Arachis hypogaea HOM05D002925 ORTHO05D003247 1.6e-18 98.2 94 46.8
Migut.B00599 Erythranthe guttata HOM05D002925 ORTHO05D003247 1.6e-18 98.2 95 47.4
Nn5g30080 Nelumbo nucifera HOM05D002925 ORTHO05D003247 1.6e-18 98.2 77 55.8
Prupe.1G518500 Prunus persica HOM05D002925 ORTHO05D003247 2.1e-18 97.8 287 31.4
Oeu036916.1 Olea europaea HOM05D002925 ORTHO05D003247 3.5e-18 97.1 98 44.9
ATR0782G164 Amborella trichopoda HOM05D002925 ORTHO05D003247 4.6e-18 96.7 93 49.5
MD00G1009700 Malus domestica HOM05D002925 ORTHO05D003247 4.6e-18 96.7 242 32.2
CANSAT25G0699 Cannabis sativa HOM05D002925 ORTHO05D003247 6.0e-18 96.3 155 38.7
DCAR_021864 Daucus carota HOM05D002925 ORTHO05D003247 7.8e-18 95.9 136 32.4
ECA232G0543 Erigeron canadensis HOM05D002925 ORTHO05D003247 7.8e-18 95.9 190 32.1
AUR62013144 Chenopodium quinoa HOM05D002925 ORTHO05D003247 1.0e-17 95.5 147 34.7
SGA_v2.0_scaffold83G26306 Striga asiatica HOM05D002925 ORTHO05D003247 1.7e-17 94.7 95 44.2
AUR62010148 Chenopodium quinoa HOM05D002925 ORTHO05D003247 3.0e-17 94.0 147 34.7
QL12p036977 Quercus lobata HOM05D002925 ORTHO05D003247 6.6e-17 92.8 210 32.9
unitig_8.g5045 Utricularia gibba HOM05D002925 ORTHO05D003247 6.6e-17 92.8 133 39.1
TPR.G26131 Trifolium pratense HOM05D002925 ORTHO05D003247 1.5e-16 91.7 185 34.6
Medtr3g074640 Medicago truncatula HOM05D002925 ORTHO05D003247 1.9e-16 91.3 308 26.3
Rhsim11G0137200 Rhododendron simsii HOM05D002925 ORTHO05D003247 2.5e-16 90.9 157 31.8
Cpa.g.sc42.36 Carica papaya HOM05D002925 ORTHO05D003247 3.3e-16 90.5 124 37.1
Haze_22282 Corylus avellana HOM05D002925 ORTHO05D003247 5.6e-16 89.7 213 32.4
TPR.G25224 Trifolium pratense HOM05D002925 ORTHO05D003247 3.6e-15 87.0 199 30.7
unitig_22.g6065 Utricularia gibba HOM05D002925 ORTHO05D003247 4.8e-15 86.7 87 43.7
Os09g0473350 Oryza sativa ssp. japonica HOM05D002925 ORTHO05D003247 1.1e-14 85.5 77 48.1
SGA_v2.0_scaffold74G24575 Striga asiatica HOM05D002925 ORTHO05D003247 1.4e-14 85.1 122 41.0
vmacro21264 Vaccinium macrocarpon HOM05D002925 ORTHO05D003247 9.0e-14 82.4 260 30.0
COL.COLO4_16382 Corchorus olitorius HOM05D002925 ORTHO05D003247 1.5e-13 81.6 233 30.5
Lj1g0024313 Lotus japonicus HOM05D002925 ORTHO05D003247 1.5e-13 81.6 94 41.5
HanXRQChr11g0338071 Helianthus annuus HOM05D002925 ORTHO05D003247 4.5e-13 80.1 139 33.1
Lsat_1_v5_gn_5_108081 Lactuca sativa HOM05D002925 ORTHO05D003247 4.5e-13 80.1 89 38.2
SEGI_07396 Sequoiadendron giganteum HOM05D002925 ORTHO05D003247 4.5e-13 80.1 160 29.4
CARHR035350 Cardamine hirsuta HOM05D002925 ORTHO05D003247 7.6e-13 79.3 60 65.0
HanXRQChr16g0514751 Helianthus annuus HOM05D002925 ORTHO05D003247 2.2e-12 77.8 96 35.4
Thecc.02G136800 Theobroma cacao HOM05D002925 ORTHO05D003247 2.9e-12 77.4 197 31.0
Lsat_1_v5_gn_7_82001 Lactuca sativa HOM05D002925 ORTHO05D003247 2.4e-11 74.3 92 33.7
vmacro01831 Vaccinium macrocarpon HOM05D002925 ORTHO05D003247 2.4e-11 74.3 74 41.9
RcHm_v2.0_Chr6g0271611 Rosa chinensis HOM05D002925 ORTHO05D003247 9.3e-11 72.4 132 37.1
AUR62018927 Chenopodium quinoa HOM05D002925 ORTHO05D003247 1.6e-10 71.6 109 36.7
Manes.18G066500 Manihot esculenta HOM05D002925 ORTHO05D003247 4.6e-10 70.1 225 27.6
ECA234G1059 Erigeron canadensis HOM05D002925 ORTHO05D003247 7.9e-10 69.3 95 32.6
Ca_15252_v3 Cicer arietinum L. HOM05D002925 ORTHO05D003247 3.0e-09 67.4 74 41.9
EL10Ac9g21492 Beta vulgaris HOM05D002925 ORTHO05D003247 5.6e-08 63.2 208 27.4


User provided reference genes

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