Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR022620 Cardamine hirsuta HOM05D002704 ORTHO05D002891 8.9e-78 293.5 145 100.0
Sp1g19760 Schrenkiella parvula HOM05D002704 ORTHO05D002891 3.8e-52 208.4 130 80.8
Thhalv10008815m.g Eutrema salsugineum HOM05D002704 ORTHO05D002891 1.1e-51 206.8 129 81.4
AT1G22250 Arabidopsis thaliana HOM05D002704 ORTHO05D002891 6.6e-49 197.6 130 78.5
BcaC06g34946 Brassica carinata HOM05D002704 ORTHO05D002891 2.8e-47 192.2 130 76.2
C07p21480 Brassica napus HOM05D002704 ORTHO05D002891 2.8e-47 192.2 130 76.2
BolC7t42674H Brassica oleracea HOM05D002704 ORTHO05D002891 2.8e-47 192.2 130 76.2
BcaB03g14223 Brassica carinata HOM05D002704 ORTHO05D002891 3.6e-47 191.8 128 75.8
BcaB03g14224 Brassica carinata HOM05D002704 ORTHO05D002891 3.6e-47 191.8 128 75.8
A09p42520 Brassica napus HOM05D002704 ORTHO05D002891 3.6e-47 191.8 127 78.0
BraA09t39728Z Brassica rapa HOM05D002704 ORTHO05D002891 3.6e-47 191.8 127 78.0
A07p14590 Brassica napus HOM05D002704 ORTHO05D002891 1.1e-46 190.3 130 75.4
BraA07t29205Z Brassica rapa HOM05D002704 ORTHO05D002891 3.1e-46 188.7 130 74.6
Carub.0001s2180 Capsella rubella HOM05D002704 ORTHO05D002891 4.9e-44 181.4 128 71.1
BolC5t30835H Brassica oleracea HOM05D002704 ORTHO05D002891 4.6e-42 174.9 122 76.2
BcaB07g32247 Brassica carinata HOM05D002704 ORTHO05D002891 1.9e-40 169.5 130 73.1
BcaC05g26153 Brassica carinata HOM05D002704 ORTHO05D002891 2.8e-39 165.6 106 80.2
C05p21380 Brassica napus HOM05D002704 ORTHO05D002891 2.8e-39 165.6 106 80.2
AL1G35710 Arabidopsis lyrata HOM05D002704 ORTHO05D002891 4.8e-39 164.9 129 70.5
Aa31LG7G6190 Aethionema arabicum HOM05D002704 ORTHO05D002891 4.9e-36 154.8 141 62.4
AL2G38480 Arabidopsis lyrata HOM05D002704 ORTHO05D002891 2.1e-31 139.4 149 56.4
AT1G78170 Arabidopsis thaliana HOM05D002704 ORTHO05D002891 8.1e-31 137.5 150 57.3
CARHR071630 Cardamine hirsuta HOM05D002704 ORTHO05D002891 2.4e-30 136.0 152 52.6
Sp5g33290 Schrenkiella parvula HOM05D002704 ORTHO05D002891 2.6e-29 132.5 147 56.5
BcaC08g47392 Brassica carinata HOM05D002704 ORTHO05D002891 7.6e-29 131.0 148 56.1
C06p52120 Brassica napus HOM05D002704 ORTHO05D002891 7.6e-29 131.0 148 56.1
BolC6t40235H Brassica oleracea HOM05D002704 ORTHO05D002891 7.6e-29 131.0 148 56.1
BraA07t30408Z Brassica rapa HOM05D002704 ORTHO05D002891 1.3e-28 130.2 141 53.9
A07p27670 Brassica napus HOM05D002704 ORTHO05D002891 4.9e-28 128.3 145 53.8
Thhalv10019097m.g Eutrema salsugineum HOM05D002704 ORTHO05D002891 5.5e-27 124.8 155 51.0
Carub.0002s2506 Capsella rubella HOM05D002704 ORTHO05D002891 9.3e-27 124.0 147 50.3
BcaB02g07152 Brassica carinata HOM05D002704 ORTHO05D002891 4.6e-26 121.7 143 49.7
BcaB05g25124 Brassica carinata HOM05D002704 ORTHO05D002891 1.3e-25 120.2 140 50.7
BcaB03g15984 Brassica carinata HOM05D002704 ORTHO05D002891 2.3e-25 119.4 127 57.5
BcaC08g45431 Brassica carinata HOM05D002704 ORTHO05D002891 1.1e-24 117.1 83 65.1
C06p30640 Brassica napus HOM05D002704 ORTHO05D002891 1.1e-24 117.1 83 65.1
BolC6t38228H Brassica oleracea HOM05D002704 ORTHO05D002891 1.1e-24 117.1 83 65.1
THA.LOC104800151 Tarenaya hassleriana HOM05D002704 ORTHO05D002891 5.6e-24 114.8 153 48.4
Aa31LG4G8210 Aethionema arabicum HOM05D002704 ORTHO05D002891 9.6e-24 114.0 150 48.7
THA.LOC104809714 Tarenaya hassleriana HOM05D002704 ORTHO05D002891 1.6e-23 113.2 152 49.3
A07p43470 Brassica napus HOM05D002704 ORTHO05D002891 1.4e-22 110.2 72 73.6
BraA07t31860Z Brassica rapa HOM05D002704 ORTHO05D002891 1.4e-22 110.2 72 73.6
BraA02t07210Z Brassica rapa HOM05D002704 ORTHO05D002891 1.2e-21 107.1 147 47.6
A02p22080 Brassica napus HOM05D002704 ORTHO05D002891 4.9e-20 101.7 127 49.6
BolC2t09563H Brassica oleracea HOM05D002704 ORTHO05D002891 3.2e-19 99.0 123 49.6
Ciclev10002416m.g Citrus clementina HOM05D002704 ORTHO05D002891 5.5e-19 98.2 123 50.4
Manes.18G067800 Manihot esculenta HOM05D002704 ORTHO05D002891 7.1e-19 97.8 121 48.8
Duzib093G0662 Durio zibethinus HOM05D002704 ORTHO05D002891 2.7e-18 95.9 125 44.8
Hma1.2p1_0237F.1_g099460 Hydrangea macrophylla HOM05D002704 ORTHO05D002891 1.3e-17 93.6 159 39.6
Glyma.14G172800 Glycine max HOM05D002704 ORTHO05D002891 2.3e-17 92.8 122 46.7
Potri.005G165300 Populus trichocarpa HOM05D002704 ORTHO05D002891 2.3e-17 92.8 120 49.2
Gohir.D05G229400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 3.0e-17 92.4 121 49.6
Gorai.009G237500 Gossypium raimondii HOM05D002704 ORTHO05D002891 3.0e-17 92.4 121 49.6
Actinidia10319 Actinidia chinensis HOM05D002704 ORTHO05D002891 3.9e-17 92.0 126 47.6
CSS0027836 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 3.9e-17 92.0 124 47.6
Cpa.g.sc36.127 Carica papaya HOM05D002704 ORTHO05D002891 5.1e-17 91.7 122 47.5
Gohir.A05G226700 Gossypium hirsutum HOM05D002704 ORTHO05D002891 6.7e-17 91.3 120 50.0
Dinv44770 Davidia involucrata HOM05D002704 ORTHO05D002891 2.5e-16 89.4 121 43.8
Duzib041G0800 Durio zibethinus HOM05D002704 ORTHO05D002891 2.5e-16 89.4 119 46.2
Duzib116G0617 Durio zibethinus HOM05D002704 ORTHO05D002891 2.5e-16 89.4 120 46.7
QL12p036715 Quercus lobata HOM05D002704 ORTHO05D002891 2.5e-16 89.4 119 44.5
GSVIVG01009025001 Vitis vinifera HOM05D002704 ORTHO05D002891 3.3e-16 89.0 115 44.3
Ca_15248_v3 Cicer arietinum L. HOM05D002704 ORTHO05D002891 5.7e-16 88.2 125 46.4
TAR625G1386 Trochodendron aralioides HOM05D002704 ORTHO05D002891 5.7e-16 88.2 72 58.3
Dinv14325 Davidia involucrata HOM05D002704 ORTHO05D002891 7.4e-16 87.8 121 46.3
Phvul.009G030900 Phaseolus vulgaris HOM05D002704 ORTHO05D002891 7.4e-16 87.8 144 45.1
VMungo1309G0496 Vigna mungo HOM05D002704 ORTHO05D002891 7.4e-16 87.8 127 46.5
A01p24680 Brassica napus HOM05D002704 ORTHO05D002891 1.3e-15 87.0 114 50.0
BraA01t02380Z Brassica rapa HOM05D002704 ORTHO05D002891 1.3e-15 87.0 114 50.0
Glyma.13G088900 Glycine max HOM05D002704 ORTHO05D002891 1.3e-15 87.0 123 41.5
Thecc.08G107400 Theobroma cacao HOM05D002704 ORTHO05D002891 1.3e-15 87.0 117 48.7
Phvul.008G173300 Phaseolus vulgaris HOM05D002704 ORTHO05D002891 2.2e-15 86.3 120 45.0
TAR628G0302 Trochodendron aralioides HOM05D002704 ORTHO05D002891 2.2e-15 86.3 127 41.7
Atru.chr13.1197 Acer truncatum HOM05D002704 ORTHO05D002891 2.8e-15 85.9 122 48.4
COL.COLO4_16406 Corchorus olitorius HOM05D002704 ORTHO05D002891 3.7e-15 85.5 68 60.3
Lsat_1_v5_gn_9_41620 Lactuca sativa HOM05D002704 ORTHO05D002891 4.8e-15 85.1 152 41.4
Lj1g0002648 Lotus japonicus HOM05D002704 ORTHO05D002891 4.8e-15 85.1 120 44.2
MBI05_g19349_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 6.3e-15 84.7 124 42.7
arahy.Tifrunner.gnm1.ann1.8HDV7G Arachis hypogaea HOM05D002704 ORTHO05D002891 8.2e-15 84.3 102 49.0
Sabra02G0075700 Salix brachista HOM05D002704 ORTHO05D002891 8.2e-15 84.3 88 52.3
Glyma.06G103700 Glycine max HOM05D002704 ORTHO05D002891 1.1e-14 84.0 126 42.9
Lalb_Chr10g0102361 Lupinus albus HOM05D002704 ORTHO05D002891 1.1e-14 84.0 120 48.3
Potri.002G096100 Populus trichocarpa HOM05D002704 ORTHO05D002891 1.1e-14 84.0 84 53.6
Glyma.04G102400 Glycine max HOM05D002704 ORTHO05D002891 2.4e-14 82.8 117 46.2
TAR381G1126 Trochodendron aralioides HOM05D002704 ORTHO05D002891 3.1e-14 82.4 124 42.7
arahy.Tifrunner.gnm1.ann1.5JIN69 Arachis hypogaea HOM05D002704 ORTHO05D002891 5.3e-14 81.6 67 59.7
arahy.Tifrunner.gnm1.ann1.AF75R2 Arachis hypogaea HOM05D002704 ORTHO05D002891 5.3e-14 81.6 57 66.7
Cc10_g07250 Coffea canephora HOM05D002704 ORTHO05D002891 6.9e-14 81.3 72 55.6
Rhsim06G0082500 Rhododendron simsii HOM05D002704 ORTHO05D002891 6.9e-14 81.3 73 54.8
TWI56G1046 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 6.9e-14 81.3 122 42.6
Lj4C103T16 Lonicera japonica HOM05D002704 ORTHO05D002891 9.0e-14 80.9 112 45.5
Ca_05274_v3 Cicer arietinum L. HOM05D002704 ORTHO05D002891 1.5e-13 80.1 130 40.0
Lalb_Chr23g0270591 Lupinus albus HOM05D002704 ORTHO05D002891 1.5e-13 80.1 117 44.4
TWI12G0499 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 1.5e-13 80.1 122 42.6
Nn5g30117 Nelumbo nucifera HOM05D002704 ORTHO05D002891 2.0e-13 79.7 131 38.9
TPR.G32999 Trifolium pratense HOM05D002704 ORTHO05D002891 2.0e-13 79.7 118 44.9
TPR.G34534 Trifolium pratense HOM05D002704 ORTHO05D002891 2.0e-13 79.7 120 45.0
unitig_578.g16200 Utricularia gibba HOM05D002704 ORTHO05D002891 2.0e-13 79.7 113 44.2
Lalb_Chr11g0065441 Lupinus albus HOM05D002704 ORTHO05D002891 2.6e-13 79.3 124 41.9
Oeu012923.1 Olea europaea HOM05D002704 ORTHO05D002891 2.6e-13 79.3 120 45.8
Oeu046295.1 Olea europaea HOM05D002704 ORTHO05D002891 2.6e-13 79.3 116 43.1
PSO781G0307 Papaver somniferum HOM05D002704 ORTHO05D002891 2.6e-13 79.3 122 41.8
Actinidia27183 Actinidia chinensis HOM05D002704 ORTHO05D002891 3.4e-13 79.0 54 64.8
Manes.02G153000 Manihot esculenta HOM05D002704 ORTHO05D002891 3.4e-13 79.0 101 47.5
Medtr3g074450 Medicago truncatula HOM05D002704 ORTHO05D002891 4.5e-13 78.6 119 45.4
PSO541G2691 Papaver somniferum HOM05D002704 ORTHO05D002891 4.5e-13 78.6 121 42.1
Psat2g072240 Pisum sativum HOM05D002704 ORTHO05D002891 5.9e-13 78.2 113 41.6
Solyc04g074080.3 Solanum lycopersicum HOM05D002704 ORTHO05D002891 5.9e-13 78.2 119 42.0
VMungo0647G0311 Vigna mungo HOM05D002704 ORTHO05D002891 5.9e-13 78.2 115 40.0
CiPaw.08G044800 Carya illinoinensis HOM05D002704 ORTHO05D002891 7.7e-13 77.8 59 59.3
Psat5g138480 Pisum sativum HOM05D002704 ORTHO05D002891 1.0e-12 77.4 127 43.3
unitig_8.g4838 Utricularia gibba HOM05D002704 ORTHO05D002891 1.0e-12 77.4 122 42.6
MSTRG.24460 Avicennia marina HOM05D002704 ORTHO05D002891 2.2e-12 76.3 105 44.8
CiPaw.07G180300 Carya illinoinensis HOM05D002704 ORTHO05D002891 2.9e-12 75.9 121 40.5
Nn1g05351 Nelumbo nucifera HOM05D002704 ORTHO05D002891 3.8e-12 75.5 83 48.2
Lalb_Chr04g0253151 Lupinus albus HOM05D002704 ORTHO05D002891 5.0e-12 75.1 139 40.3
Nitab4.5_0002098g0040 Nicotiana tabacum HOM05D002704 ORTHO05D002891 5.0e-12 75.1 114 43.0
Nitab4.5_0000421g0060 Nicotiana tabacum HOM05D002704 ORTHO05D002891 6.5e-12 74.7 106 45.3
HanXRQChr15g0491861 Helianthus annuus HOM05D002704 ORTHO05D002891 8.5e-12 74.3 119 44.5
MSTRG.22153 Avicennia marina HOM05D002704 ORTHO05D002891 1.1e-11 73.9 123 39.0
Prupe.1G516300 Prunus persica HOM05D002704 ORTHO05D002891 1.1e-11 73.9 121 40.5
Aqoxy6G00791 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 1.4e-11 73.6 108 42.6
FAN04G1068 Fragaria x ananassa HOM05D002704 ORTHO05D002891 1.9e-11 73.2 118 39.8
FAN08G2281 Fragaria x ananassa HOM05D002704 ORTHO05D002891 1.9e-11 73.2 50 58.0
RcHm_v2.0_Chr7g0239041 Rosa chinensis HOM05D002704 ORTHO05D002891 2.5e-11 72.8 53 54.7
PGSC0003DMG400006402 Solanum tuberosum HOM05D002704 ORTHO05D002891 2.5e-11 72.8 144 38.2
Peaxi162Scf00041g00165 Petunia axillaris HOM05D002704 ORTHO05D002891 3.2e-11 72.4 141 39.0
FvH4_5g37370 Fragaria vesca HOM05D002704 ORTHO05D002891 4.2e-11 72.0 50 56.0
FAN18G1803 Fragaria x ananassa HOM05D002704 ORTHO05D002891 4.2e-11 72.0 50 56.0
DCAR_029361 Daucus carota HOM05D002704 ORTHO05D002891 7.2e-11 71.2 103 42.7
CsaV3_3G048710 Cucumis sativus L. HOM05D002704 ORTHO05D002891 9.4e-11 70.9 112 42.9
Nitab4.5_0005777g0010 Nicotiana tabacum HOM05D002704 ORTHO05D002891 9.4e-11 70.9 139 37.4
Hund26960 Selenicereus undatus HOM05D002704 ORTHO05D002891 9.4e-11 70.9 115 37.4
FAN13G2774 Fragaria x ananassa HOM05D002704 ORTHO05D002891 1.2e-10 70.5 50 54.0
Gohir.D02G083400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 1.2e-10 70.5 119 41.2
vmacro21275 Vaccinium macrocarpon HOM05D002704 ORTHO05D002891 1.2e-10 70.5 63 52.4
Hund16912 Selenicereus undatus HOM05D002704 ORTHO05D002891 2.1e-10 69.7 106 43.4
CAN.G101.15 Capsicum annuum HOM05D002704 ORTHO05D002891 2.7e-10 69.3 142 38.0
Migut.N02898 Erythranthe guttata HOM05D002704 ORTHO05D002891 2.7e-10 69.3 60 56.7
Gohir.A02G076100 Gossypium hirsutum HOM05D002704 ORTHO05D002891 2.7e-10 69.3 116 40.5
MD15G1368100 Malus domestica HOM05D002704 ORTHO05D002891 2.7e-10 69.3 117 38.5
Medtr5g063720 Medicago truncatula HOM05D002704 ORTHO05D002891 2.7e-10 69.3 58 55.2
AT4G08910 Arabidopsis thaliana HOM05D002704 ORTHO05D002891 3.6e-10 68.9 123 40.7
MD08G1182400 Malus domestica HOM05D002704 ORTHO05D002891 4.6e-10 68.6 117 37.6
Nitab4.5_0000232g0230 Nicotiana tabacum HOM05D002704 ORTHO05D002891 4.6e-10 68.6 138 37.7
AL6G41650 Arabidopsis lyrata HOM05D002704 ORTHO05D002891 7.9e-10 67.8 119 37.8
CANSAT25G0913 Cannabis sativa HOM05D002704 ORTHO05D002891 1.4e-09 67.0 46 67.4
Sc23g0000210 Simmondsia chinensis HOM05D002704 ORTHO05D002891 1.4e-09 67.0 117 38.5
MELO3C003450.2 Cucumis melo HOM05D002704 ORTHO05D002891 1.8e-09 66.6 116 38.8
Sc01g0000430 Simmondsia chinensis HOM05D002704 ORTHO05D002891 1.8e-09 66.6 37 73.0
Gorai.005G094000 Gossypium raimondii HOM05D002704 ORTHO05D002891 3.9e-09 65.5 95 42.1
PSO447G0371 Papaver somniferum HOM05D002704 ORTHO05D002891 3.9e-09 65.5 123 39.0
unitig_578.g16524 Utricularia gibba HOM05D002704 ORTHO05D002891 5.1e-09 65.1 95 41.1
Eucgr.B00020 Eucalyptus grandis HOM05D002704 ORTHO05D002891 8.8e-09 64.3 131 32.8
PSO210G1059 Papaver somniferum HOM05D002704 ORTHO05D002891 8.8e-09 64.3 118 39.0
Carub.0006s2748 Capsella rubella HOM05D002704 ORTHO05D002891 1.1e-08 63.9 115 37.4
Thhalv10028969m.g Eutrema salsugineum HOM05D002704 ORTHO05D002891 1.5e-08 63.5 128 37.5
CARHR259930 Cardamine hirsuta HOM05D002704 ORTHO05D002891 2.0e-08 63.2 108 40.7
CDE04G0076 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 2.5e-08 62.8 110 37.3
AUR62027750 Chenopodium quinoa HOM05D002704 ORTHO05D002891 3.3e-08 62.4 125 31.2
EL10Ac1g01225 Beta vulgaris HOM05D002704 ORTHO05D002891 7.4e-08 61.2 121 32.2
Haze_22261 Corylus avellana HOM05D002704 ORTHO05D002891 9.7e-08 60.8 40 65.0
Sed0024849 Sechium edule HOM05D002704 ORTHO05D002891 9.7e-08 60.8 61 49.2
Eucgr.F02409 Eucalyptus grandis HOM05D002704 ORTHO05D002891 1.3e-07 60.5 132 31.1
Sp6g08890 Schrenkiella parvula HOM05D002704 ORTHO05D002891 2.2e-07 59.7 118 33.1
AUR62038516 Chenopodium quinoa HOM05D002704 ORTHO05D002891 2.8e-07 59.3 124 30.6
ClCG11G015290 Citrullus lanatus HOM05D002704 ORTHO05D002891 2.8e-07 59.3 115 40.0
THA.LOC104816761 Tarenaya hassleriana HOM05D002704 ORTHO05D002891 2.8e-07 59.3 90 38.9
ATR0782G003 Amborella trichopoda HOM05D002704 ORTHO05D002891 3.7e-07 58.9 50 48.0
CDE10G0994 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 3.7e-07 58.9 118 36.4
Ah.05g170030 Amaranthus hybridus HOM05D002704 ORTHO05D002891 6.3e-07 58.2 113 36.3
Zm00001eb401340 Zea mays HOM05D002704 ORTHO05D002891 1.1e-06 57.4 52 50.0
CDE10G0971 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 2.4e-06 56.2 42 54.8
MELO3C011023.2 Cucumis melo HOM05D002704 ORTHO05D002891 3.1e-06 55.8 45 55.6
CsaV3_2G029650 Cucumis sativus L. HOM05D002704 ORTHO05D002891 3.1e-06 55.8 45 55.6
Sed0020547 Sechium edule HOM05D002704 ORTHO05D002891 3.1e-06 55.8 104 40.4
Aqoxy2G04081 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 4.1e-06 55.5 127 31.5
Aqoxy6G02333 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 4.1e-06 55.5 127 31.5
ClCG08G011070 Citrullus lanatus HOM05D002704 ORTHO05D002891 4.1e-06 55.5 42 57.1
Os03g0191200 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 5.3e-06 55.1 39 53.8
Zm00001eb006930 Zea mays HOM05D002704 ORTHO05D002891 5.3e-06 55.1 94 38.3
HPP92_011168 Vanilla planifolia HOM05D002704 ORTHO05D002891 6.9e-06 54.7 52 42.3
HPP92_011170 Vanilla planifolia HOM05D002704 ORTHO05D002891 6.9e-06 54.7 52 42.3
MBI08_g28697_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 9.1e-06 54.3 66 42.4


User provided reference genes

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