Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR020540 Cardamine hirsuta HOM05D005168 ORTHO05D006358 3.5e-64 248.1 120 100.0
BcaB03g14336 Brassica carinata HOM05D005168 ORTHO05D006358 5.3e-60 234.2 120 92.5
BcaB03g14344 Brassica carinata HOM05D005168 ORTHO05D006358 5.3e-60 234.2 120 92.5
C07p23400 Brassica napus HOM05D005168 ORTHO05D006358 5.3e-60 234.2 120 92.5
BolC7t42872H Brassica oleracea HOM05D005168 ORTHO05D006358 5.3e-60 234.2 120 92.5
A07p16030 Brassica napus HOM05D005168 ORTHO05D006358 2.0e-59 232.3 120 91.7
BraA07t29331Z Brassica rapa HOM05D005168 ORTHO05D006358 2.0e-59 232.3 120 91.7
Sp1g17830 Schrenkiella parvula HOM05D005168 ORTHO05D006358 2.0e-59 232.3 120 92.5
Thhalv10009132m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 2.2e-58 228.8 120 90.8
Thhalv10019327m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 6.5e-58 227.3 120 90.0
AL5G14600 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 8.4e-58 226.9 120 90.8
AT3G25940 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 7.1e-57 223.8 120 90.0
CARHR146930 Cardamine hirsuta HOM05D005168 ORTHO05D006358 1.6e-56 222.6 120 89.2
A06p16200 Brassica napus HOM05D005168 ORTHO05D006358 2.1e-56 222.2 120 88.3
BraA06t24725Z Brassica rapa HOM05D005168 ORTHO05D006358 2.1e-56 222.2 120 87.5
BcaC05g25900 Brassica carinata HOM05D005168 ORTHO05D006358 6.0e-56 220.7 120 87.5
C05p18550 Brassica napus HOM05D005168 ORTHO05D006358 6.0e-56 220.7 120 87.5
BcaB07g32021 Brassica carinata HOM05D005168 ORTHO05D006358 1.3e-55 219.5 120 87.5
BolC5t30566H Brassica oleracea HOM05D005168 ORTHO05D006358 1.3e-55 219.5 120 87.5
Carub.0005s0380 Capsella rubella HOM05D005168 ORTHO05D006358 9.7e-54 213.4 120 84.2
Aa31LG4G6030 Aethionema arabicum HOM05D005168 ORTHO05D006358 5.9e-51 204.1 121 81.8
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 2.5e-49 198.7 121 81.0
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 4.2e-49 198.0 121 81.0
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 9.4e-49 196.8 121 80.2
Cpa.g.sc58.102 Carica papaya HOM05D005168 ORTHO05D006358 1.1e-41 173.3 121 70.2
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 1.7e-34 149.4 120 60.8
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 3.8e-34 148.3 120 60.0
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 1.1e-33 146.7 120 60.0
Atru.chr1.3654 Acer truncatum HOM05D005168 ORTHO05D006358 1.4e-33 146.4 121 60.3
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 7.2e-33 144.1 117 59.8
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 6.1e-32 141.0 120 58.3
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 2.3e-31 139.0 117 59.0
Ciclev10003775m.g Citrus clementina HOM05D005168 ORTHO05D006358 2.0e-30 136.0 114 57.0
TWI56G1449 Tripterygium wilfordii HOM05D005168 ORTHO05D006358 2.6e-30 135.6 120 58.3
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 3.3e-30 135.2 117 56.4
Manes.14G063600 Manihot esculenta HOM05D005168 ORTHO05D006358 9.7e-30 133.7 120 54.2
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 1.3e-29 133.3 120 53.3
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 1.7e-29 132.9 117 55.6
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 2.8e-29 132.1 121 57.0
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 3.7e-29 131.7 120 54.2
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 4.8e-29 131.3 120 53.3
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 6.3e-29 131.0 120 55.0
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 8.2e-29 130.6 120 55.8
QL01p031168 Quercus lobata HOM05D005168 ORTHO05D006358 8.2e-29 130.6 118 50.8
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 1.1e-28 130.2 120 51.7
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 1.1e-28 130.2 110 55.5
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 1.8e-28 129.4 120 51.7
PGR031G0142 Punica granatum HOM05D005168 ORTHO05D006358 1.8e-28 129.4 120 56.7
Prupe.6G147400 Prunus persica HOM05D005168 ORTHO05D006358 2.4e-28 129.0 121 56.2
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 3.1e-28 128.6 120 55.0
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 4.1e-28 128.3 120 53.3
Thecc.08G047200 Theobroma cacao HOM05D005168 ORTHO05D006358 4.1e-28 128.3 120 52.5
SGA_v2.0_scaffold47G17500 Striga asiatica HOM05D005168 ORTHO05D006358 2.6e-27 125.6 120 53.3
AL1G32870 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 3.5e-27 125.2 68 88.2
Nn3g19859 Nelumbo nucifera HOM05D005168 ORTHO05D006358 3.5e-27 125.2 114 51.8
SGA_v2.0_scaffold19G08553 Striga asiatica HOM05D005168 ORTHO05D006358 3.5e-27 125.2 120 53.3
MSTRG.22344 Avicennia marina HOM05D005168 ORTHO05D006358 5.9e-27 124.4 119 52.9
Potri.013G015000 Populus trichocarpa HOM05D005168 ORTHO05D006358 7.7e-27 124.0 120 50.0
TAR622G0958 Trochodendron aralioides HOM05D005168 ORTHO05D006358 7.7e-27 124.0 122 50.0
Hma1.2p1_0733F.1_g210170 Hydrangea macrophylla HOM05D005168 ORTHO05D006358 1.0e-26 123.6 117 53.0
GSVIVG01009945001 Vitis vinifera HOM05D005168 ORTHO05D006358 1.3e-26 123.2 124 52.4
Eucgr.C01258 Eucalyptus grandis HOM05D005168 ORTHO05D006358 2.2e-26 122.5 120 52.5
Eucgr.H00960 Eucalyptus grandis HOM05D005168 ORTHO05D006358 2.2e-26 122.5 120 53.3
CAN.G727.4 Capsicum annuum HOM05D005168 ORTHO05D006358 2.9e-26 122.1 120 53.3
Peaxi162Scf00553g00216 Petunia axillaris HOM05D005168 ORTHO05D006358 3.8e-26 121.7 120 52.5
Nitab4.5_0003251g0060 Nicotiana tabacum HOM05D005168 ORTHO05D006358 5.0e-26 121.3 116 53.4
Nitab4.5_0000337g0010 Nicotiana tabacum HOM05D005168 ORTHO05D006358 6.5e-26 120.9 116 53.4
CDE11G0347 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 8.5e-26 120.6 114 52.6
Gohir.A06G002600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 8.5e-26 120.6 120 50.8
Gohir.D06G005600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 8.5e-26 120.6 120 50.8
Gorai.010G002800 Gossypium raimondii HOM05D005168 ORTHO05D006358 8.5e-26 120.6 120 50.8
SalBow8G1113 Salvia bowleyana HOM05D005168 ORTHO05D006358 1.1e-25 120.2 116 51.7
DCAR_015742 Daucus carota HOM05D005168 ORTHO05D006358 3.2e-25 118.6 124 51.6
ECA238G1857 Erigeron canadensis HOM05D005168 ORTHO05D006358 3.2e-25 118.6 118 49.2
CSS0038486 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 4.2e-25 118.2 119 50.4
PSO541G4324 Papaver somniferum HOM05D005168 ORTHO05D006358 4.2e-25 118.2 123 49.6
PSO675G5410 Papaver somniferum HOM05D005168 ORTHO05D006358 4.2e-25 118.2 123 49.6
Duzib093G1099 Durio zibethinus HOM05D005168 ORTHO05D006358 5.5e-25 117.9 121 50.4
CSS0004439 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 7.2e-25 117.5 121 48.8
Cc10_g01450 Coffea canephora HOM05D005168 ORTHO05D006358 9.4e-25 117.1 116 50.9
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 1.2e-24 116.7 120 51.7
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 1.2e-24 116.7 120 51.7
Lsat_1_v5_gn_2_14120 Lactuca sativa HOM05D005168 ORTHO05D006358 1.6e-24 116.3 118 49.2
Actinidia37940 Actinidia chinensis HOM05D005168 ORTHO05D006358 2.1e-24 115.9 122 48.4
Migut.N03173 Erythranthe guttata HOM05D005168 ORTHO05D006358 3.6e-24 115.2 119 47.1
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 6.1e-24 114.4 124 54.0
Os03g0711700 Oryza sativa ssp. japonica HOM05D005168 ORTHO05D006358 6.1e-24 114.4 116 51.7
FAN23G3095 Fragaria x ananassa HOM05D005168 ORTHO05D006358 1.4e-23 113.2 116 55.2
Sc15g0004820 Simmondsia chinensis HOM05D005168 ORTHO05D006358 5.2e-23 111.3 124 46.8
unitig_22.g6797 Utricularia gibba HOM05D005168 ORTHO05D006358 5.2e-23 111.3 117 49.6
HanXRQChr04g0101211 Helianthus annuus HOM05D005168 ORTHO05D006358 3.3e-22 108.6 113 46.9
EL10Ac1g02165 Beta vulgaris HOM05D005168 ORTHO05D006358 4.4e-22 108.2 124 45.2
Hund09202 Selenicereus undatus HOM05D005168 ORTHO05D006358 7.5e-22 107.5 124 43.5
AT1G20065 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 9.7e-22 107.1 62 82.3
vmacro04368 Vaccinium macrocarpon HOM05D005168 ORTHO05D006358 9.7e-22 107.1 114 47.4
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 2.8e-21 105.5 113 49.6
Sopen04g024330 Solanum pennellii HOM05D005168 ORTHO05D006358 8.3e-21 104.0 107 52.3
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 2.4e-20 102.4 121 49.6
BcaC05g25904 Brassica carinata HOM05D005168 ORTHO05D006358 5.3e-20 101.3 90 64.4
Dinv40488 Davidia involucrata HOM05D005168 ORTHO05D006358 1.6e-19 99.8 102 52.0
AagrBONN_evm.TU.Sc2ySwM_368.3393 Anthoceros agrestis HOM05D005168 ORTHO05D006358 2.7e-19 99.0 118 41.5
SEGI_04309 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 1.3e-18 96.7 115 44.3
SMO351G0141 Selaginella moellendorffii HOM05D005168 ORTHO05D006358 3.8e-18 95.1 108 42.6
Sabra13G0016900 Salix brachista HOM05D005168 ORTHO05D006358 2.5e-17 92.4 98 45.9
Rhsim07G0250400 Rhododendron simsii HOM05D005168 ORTHO05D006358 4.2e-17 91.7 118 40.7
Sabra13G0012900 Salix brachista HOM05D005168 ORTHO05D006358 9.4e-17 90.5 95 46.3
Mapoly0043s0107 Marchantia polymorpha HOM05D005168 ORTHO05D006358 1.2e-16 90.1 123 39.0
Aqoxy2G01931 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 2.7e-16 89.0 122 42.6
THA.LOC109116732 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 9.8e-14 80.5 53 71.7
HPP92_028162 Vanilla planifolia HOM05D005168 ORTHO05D006358 1.7e-13 79.7 96 46.9
Eucgr.L01842 Eucalyptus grandis HOM05D005168 ORTHO05D006358 2.2e-13 79.3 66 57.6
TPR.G9182 Trifolium pratense HOM05D005168 ORTHO05D006358 2.8e-13 79.0 83 50.6
Pp3c24_7070 Physcomitrium patens HOM05D005168 ORTHO05D006358 3.7e-13 78.6 154 31.2
ATR0057G015 Amborella trichopoda HOM05D005168 ORTHO05D006358 1.1e-12 77.0 87 40.2
Cre01.g018000 Chlamydomonas reinhardtii HOM05D005168 ORTHO05D006358 1.8e-12 76.3 121 34.7
CDE09G0329 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 2.4e-12 75.9 74 51.4
Glyma.19G179600 Glycine max HOM05D005168 ORTHO05D006358 7.0e-12 74.3 68 48.5
FAN26G0870 Fragaria x ananassa HOM05D005168 ORTHO05D006358 7.7e-11 70.9 72 54.2
Glyma.06G213500 Glycine max HOM05D005168 ORTHO05D006358 7.7e-11 70.9 67 53.7
Eucgr.F02832 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.0e-10 70.5 75 48.0
Aqoxy6G02286 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 1.7e-10 69.7 111 36.9
Glyma.17G201200 Glycine max HOM05D005168 ORTHO05D006358 2.9e-10 68.9 83 45.8
Ca_15982_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 1.5e-09 66.6 53 56.6
Glyma.08G301902 Glycine max HOM05D005168 ORTHO05D006358 1.5e-09 66.6 83 44.6
Glyma.11G172400 Glycine max HOM05D005168 ORTHO05D006358 1.5e-09 66.6 71 50.7
Lj4A21T59 Lonicera japonica HOM05D005168 ORTHO05D006358 1.5e-09 66.6 76 43.4
Glyma.08G246200 Glycine max HOM05D005168 ORTHO05D006358 3.3e-09 65.5 48 60.4
MCO15G369 Micromonas commoda HOM05D005168 ORTHO05D006358 9.5e-09 63.9 127 31.5
MD15G1010600 Malus domestica HOM05D005168 ORTHO05D006358 6.1e-08 61.2 54 53.7
ECA238G0944 Erigeron canadensis HOM05D005168 ORTHO05D006358 6.8e-07 57.8 72 41.7
SHI17132 Sapria himalayana HOM05D005168 ORTHO05D006358 8.9e-07 57.4 39 59.0
Cc06_g21100 Coffea canephora HOM05D006029 ORTHO05D007439 2.6e-06 55.8 113 31.9
Ah.01g021000 Amaranthus hybridus HOM05D005168 ORTHO05D006358 3.4e-06 55.5 44 56.8
AUR62040557 Chenopodium quinoa HOM05D005168 ORTHO05D006358 3.4e-06 55.5 44 56.8
AUR62041475 Chenopodium quinoa HOM05D005168 ORTHO05D006358 7.5e-06 54.3 87 37.9


User provided reference genes

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