Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR018810 Cardamine hirsuta HOM05D003766 ORTHO05D004607 1.9e-311 1072.0 680 100.0
AL1G30630 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 3.2e-287 991.5 681 94.3
Thhalv10006987m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 7.9e-286 986.9 680 92.9
Carub.0001s1787 Capsella rubella HOM05D003766 ORTHO05D004607 1.8e-285 985.7 680 93.4
Sp1g16220 Schrenkiella parvula HOM05D003766 ORTHO05D004607 3.3e-284 981.5 680 93.4
AT1G18260 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 6.3e-283 977.2 681 93.0
A06p14270 Brassica napus HOM05D003766 ORTHO05D004607 1.1e-282 976.5 681 92.5
BraA06t24556Z Brassica rapa HOM05D003766 ORTHO05D004607 1.1e-282 976.5 681 92.5
BolC5t30350H Brassica oleracea HOM05D003766 ORTHO05D004607 1.8e-282 975.7 681 92.7
C05p16530 Brassica napus HOM05D003766 ORTHO05D004607 2.4e-282 975.3 681 92.5
BcaC05g25719 Brassica carinata HOM05D003766 ORTHO05D004607 3.1e-282 974.9 681 92.4
BcaB07g31816 Brassica carinata HOM05D003766 ORTHO05D004607 4.1e-282 974.5 681 92.4
Aa31LG7G2830 Aethionema arabicum HOM05D003766 ORTHO05D004607 4.1e-274 948.0 682 90.5
Aa31LG4G3770 Aethionema arabicum HOM05D003766 ORTHO05D004607 8.0e-254 880.6 673 84.7
Thhalv10018231m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 2.6e-252 875.5 669 85.2
AL2G33320 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 9.7e-252 873.6 673 85.1
CARHR066590 Cardamine hirsuta HOM05D003766 ORTHO05D004607 1.4e-250 869.8 670 84.8
THA.LOC104813927 Tarenaya hassleriana HOM05D003766 ORTHO05D004607 5.9e-249 864.4 667 84.7
AT1G73570 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 5.4e-234 814.7 673 71.5
Cpa.g.sc3.393 Carica papaya HOM05D003766 ORTHO05D004607 9.8e-220 767.3 660 76.4
TWI60G0360 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 4.6e-217 758.4 659 76.3
DCAR_029422 Daucus carota HOM05D003766 ORTHO05D004607 1.7e-216 756.5 667 75.3
Ciclev10007659m.g Citrus clementina HOM05D003766 ORTHO05D004607 1.2e-214 750.4 655 75.6
SalBow7G0490 Salvia bowleyana HOM05D003766 ORTHO05D004607 1.1e-213 747.3 653 77.5
Migut.I00296 Erythranthe guttata HOM05D003766 ORTHO05D004607 2.0e-212 743.0 664 75.6
Lj4g0008657 Lotus japonicus HOM05D003766 ORTHO05D004607 1.9e-210 736.5 651 76.2
MBI19_g04409_MAGBIO Magnolia biondii HOM05D003766 ORTHO05D004607 1.9e-210 736.5 668 72.3
Sp5g28730 Schrenkiella parvula HOM05D003766 ORTHO05D004607 2.1e-209 733.0 673 73.3
Actinidia09075 Actinidia chinensis HOM05D003766 ORTHO05D004607 1.7e-208 729.9 670 75.4
TWI81G0458 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 8.6e-208 727.6 685 72.6
SGA_v2.0_scaffold102G29891 Striga asiatica HOM05D003766 ORTHO05D004607 1.9e-207 726.5 684 73.4
unitig_750.g28512 Utricularia gibba HOM05D003766 ORTHO05D004607 9.5e-207 724.2 664 70.9
Psat4g000160 Pisum sativum HOM05D003766 ORTHO05D004607 5.2e-205 718.4 676 73.7
CAN.G843.53 Capsicum annuum HOM05D003766 ORTHO05D004607 6.8e-205 718.0 663 74.1
Lj5C158T14 Lonicera japonica HOM05D003766 ORTHO05D004607 6.8e-205 718.0 686 73.3
Manes.06G005800 Manihot esculenta HOM05D003766 ORTHO05D004607 4.4e-204 715.3 689 72.4
MSTRG.11305 Avicennia marina HOM05D003766 ORTHO05D004607 1.3e-203 713.8 670 74.3
Eucgr.B00997 Eucalyptus grandis HOM05D003766 ORTHO05D004607 1.3e-203 713.8 672 71.0
Rhsim08G0126600 Rhododendron simsii HOM05D003766 ORTHO05D004607 1.1e-202 710.7 705 67.7
CSS0048248 Camellia sinensis var. sinensis HOM05D003766 ORTHO05D004607 2.7e-201 706.1 671 70.9
Lalb_Chr09g0330351 Lupinus albus HOM05D003766 ORTHO05D004607 6.6e-200 701.4 669 73.2
ECA232G0010 Erigeron canadensis HOM05D003766 ORTHO05D004607 2.1e-198 696.4 659 73.0
Sed0009438 Sechium edule HOM05D003766 ORTHO05D004607 1.4e-197 693.7 665 72.2
Cc04_g06210 Coffea canephora HOM05D003766 ORTHO05D004607 3.1e-197 692.6 575 79.3
Dinv04134 Davidia involucrata HOM05D003766 ORTHO05D004607 3.1e-197 692.6 626 75.6
TAR622G0358 Trochodendron aralioides HOM05D003766 ORTHO05D004607 9.0e-197 691.0 647 65.4
Thecc.03G055500 Theobroma cacao HOM05D003766 ORTHO05D004607 3.4e-196 689.1 675 68.7
Atru.chr9.1710 Acer truncatum HOM05D003766 ORTHO05D004607 7.6e-196 688.0 672 69.9
Duzib068G0750 Durio zibethinus HOM05D003766 ORTHO05D004607 9.3e-194 681.0 652 69.6
Lsat_1_v5_gn_0_34021 Lactuca sativa HOM05D003766 ORTHO05D004607 1.6e-193 680.2 647 73.1
Prupe.5G234000 Prunus persica HOM05D003766 ORTHO05D004607 1.6e-193 680.2 679 69.7
FAN18G4514 Fragaria x ananassa HOM05D003766 ORTHO05D004607 6.6e-192 674.9 675 70.1
FvH4_5g17420 Fragaria vesca HOM05D003766 ORTHO05D004607 8.7e-192 674.5 675 70.1
MD14G1236800 Malus domestica HOM05D003766 ORTHO05D004607 8.7e-192 674.5 670 69.4
Medtr8g107400 Medicago truncatula HOM05D003766 ORTHO05D004607 1.5e-191 673.7 669 70.6
HanXRQChr15g0492431 Helianthus annuus HOM05D003766 ORTHO05D004607 7.3e-191 671.4 644 68.8
RcHm_v2.0_Chr7g0178271 Rosa chinensis HOM05D003766 ORTHO05D004607 9.6e-191 671.0 682 59.8
Aqoxy3G00054 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 1.6e-190 670.2 673 66.1
Sopen03g037630 Solanum pennellii HOM05D003766 ORTHO05D004607 1.6e-190 670.2 675 71.1
MELO3C002135.2 Cucumis melo HOM05D003766 ORTHO05D004607 2.1e-190 669.8 673 70.4
FAN13G1632 Fragaria x ananassa HOM05D003766 ORTHO05D004607 2.1e-190 669.8 675 65.0
ClCG04G010600 Citrullus lanatus HOM05D003766 ORTHO05D004607 3.6e-190 669.1 653 71.8
FAN04G2446 Fragaria x ananassa HOM05D003766 ORTHO05D004607 3.6e-190 669.1 672 69.6
HanXRQChr17g0545731 Helianthus annuus HOM05D003766 ORTHO05D004607 8.1e-190 667.9 614 73.6
TPR.G1449 Trifolium pratense HOM05D003766 ORTHO05D004607 1.1e-189 667.5 673 67.5
Sc10g0009160 Simmondsia chinensis HOM05D003766 ORTHO05D004607 2.4e-189 666.4 665 70.4
Solyc03g118670.3 Solanum lycopersicum HOM05D003766 ORTHO05D004607 5.3e-189 665.2 675 71.0
CsaV3_1G007190 Cucumis sativus L. HOM05D003766 ORTHO05D004607 9.0e-189 664.5 668 70.4
Gohir.D11G002500 Gossypium hirsutum HOM05D003766 ORTHO05D004607 9.0e-189 664.5 654 71.3
Potri.012G046300 Populus trichocarpa HOM05D003766 ORTHO05D004607 9.0e-189 664.5 658 69.8
FAN08G2416 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.2e-188 664.1 675 63.1
AUR62043006 Chenopodium quinoa HOM05D003766 ORTHO05D004607 2.0e-188 663.3 578 74.6
Ca_17184_v3 Cicer arietinum L. HOM05D003766 ORTHO05D004607 4.5e-188 662.1 665 70.4
Gorai.007G003500 Gossypium raimondii HOM05D003766 ORTHO05D004607 4.5e-188 662.1 654 71.3
PSO478G2458 Papaver somniferum HOM05D003766 ORTHO05D004607 7.6e-188 661.4 672 68.5
arahy.Tifrunner.gnm1.ann1.679W5T Arachis hypogaea HOM05D003766 ORTHO05D004607 9.9e-188 661.0 669 70.3
Gohir.A11G002900 Gossypium hirsutum HOM05D003766 ORTHO05D004607 9.9e-188 661.0 661 70.5
Phvul.002G330600 Phaseolus vulgaris HOM05D003766 ORTHO05D004607 1.7e-187 660.2 647 72.3
Hund06721 Selenicereus undatus HOM05D003766 ORTHO05D004607 2.9e-187 659.4 683 68.7
Ah.14g085990 Amaranthus hybridus HOM05D003766 ORTHO05D004607 4.9e-187 658.7 680 66.8
PSO017G5688 Papaver somniferum HOM05D003766 ORTHO05D004607 6.4e-187 658.3 672 68.3
Potri.015G038100 Populus trichocarpa HOM05D003766 ORTHO05D004607 8.4e-187 657.9 670 68.7
AUR62042013 Chenopodium quinoa HOM05D003766 ORTHO05D004607 1.1e-186 657.5 672 67.1
Cfa019652 Carpinus fangiana HOM05D003766 ORTHO05D004607 1.4e-186 657.1 683 64.4
Glyma.08G054900 Glycine max HOM05D003766 ORTHO05D004607 1.9e-186 656.8 665 64.7
PGR044G0562 Punica granatum HOM05D003766 ORTHO05D004607 2.4e-186 656.4 669 71.3
EL10Ac8g19505 Beta vulgaris HOM05D003766 ORTHO05D004607 4.2e-186 655.6 673 66.6
Haze_18860 Corylus avellana HOM05D003766 ORTHO05D004607 2.1e-185 653.3 696 63.6
Nn3g18290 Nelumbo nucifera HOM05D003766 ORTHO05D004607 2.1e-185 653.3 665 68.0
Sabra15G0036800 Salix brachista HOM05D003766 ORTHO05D004607 2.7e-185 652.9 650 70.8
CDE05G3381 Ceratophyllum demersum HOM05D003766 ORTHO05D004607 4.6e-185 652.1 639 69.8
VMungo0251G1288 Vigna mungo HOM05D003766 ORTHO05D004607 3.9e-184 649.0 652 68.6
QL10p029803 Quercus lobata HOM05D003766 ORTHO05D004607 1.5e-183 647.1 681 70.2
arahy.Tifrunner.gnm1.ann1.G74QKM Arachis hypogaea HOM05D003766 ORTHO05D004607 1.9e-183 646.7 695 67.9
Aqoxy3G02431 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 9.6e-183 644.4 666 64.6
Lj9A419T35 Lonicera japonica HOM05D003766 ORTHO05D004607 8.1e-182 641.3 652 70.6
Lalb_Chr05g0221621 Lupinus albus HOM05D003766 ORTHO05D004607 1.1e-181 641.0 665 64.5
Oeu015089.1 Olea europaea HOM05D003766 ORTHO05D004607 5.3e-181 638.6 652 70.1
Glyma.05G246700 Glycine max HOM05D003766 ORTHO05D004607 2.9e-179 632.9 671 68.3
GSVIVG01008448001 Vitis vinifera HOM05D003766 ORTHO05D004607 4.2e-178 629.0 578 65.9
Oeu046630.1 Olea europaea HOM05D003766 ORTHO05D004607 3.5e-177 625.9 721 57.3
ATR0753G133 Amborella trichopoda HOM05D003766 ORTHO05D004607 1.3e-176 624.0 671 65.9
Sabra12G0032400 Salix brachista HOM05D003766 ORTHO05D004607 4.3e-175 619.0 691 64.7
Peaxi162Scf00314g00235 Petunia axillaris HOM05D003766 ORTHO05D004607 1.4e-173 614.0 662 68.1
Eucgr.B00877 Eucalyptus grandis HOM05D003766 ORTHO05D004607 3.4e-172 609.4 575 73.0
Atru.chr9.1724 Acer truncatum HOM05D003766 ORTHO05D004607 7.1e-170 601.7 597 71.2
HPP92_011105 Vanilla planifolia HOM05D003766 ORTHO05D004607 1.3e-163 580.9 661 60.5
SEGI_38105 Sequoiadendron giganteum HOM05D003766 ORTHO05D004607 1.1e-159 567.8 666 62.0
CiPaw.15G143700 Carya illinoinensis HOM05D003766 ORTHO05D004607 4.1e-157 559.3 530 77.9
CiPaw.16G093700 Carya illinoinensis HOM05D003766 ORTHO05D004607 6.9e-157 558.5 655 56.8
Zm00001eb011300 Zea mays HOM05D003766 ORTHO05D004607 1.5e-156 557.4 615 61.6
Mapoly0093s0082 Marchantia polymorpha HOM05D003766 ORTHO05D004607 6.1e-153 545.4 698 54.4
Nitab4.5_0003401g0020 Nicotiana tabacum HOM05D003766 ORTHO05D004607 6.7e-144 515.4 663 62.3
MD06G1227600 Malus domestica HOM05D003766 ORTHO05D004607 3.3e-143 513.1 525 72.2
SMO228G0037 Selaginella moellendorffii HOM05D003766 ORTHO05D004607 1.0e-139 501.5 669 52.3
Pp3c19_13490 Physcomitrium patens HOM05D003766 ORTHO05D004607 2.5e-138 496.9 667 52.5
Nitab4.5_0004556g0010 Nicotiana tabacum HOM05D003766 ORTHO05D004607 1.0e-131 474.9 720 56.7
Sed0018638 Sechium edule HOM05D003766 ORTHO05D004607 6.5e-131 472.2 508 69.9
Manes.06G005600 Manihot esculenta HOM05D003766 ORTHO05D004607 1.9e-130 470.7 521 70.4
Pp3c22_10650 Physcomitrium patens HOM05D003766 ORTHO05D004607 1.6e-129 467.6 617 52.5
Oeu026275.1 Olea europaea HOM05D003766 ORTHO05D004607 1.1e-125 454.9 510 65.7
HanXRQChr14g0456281 Helianthus annuus HOM05D003766 ORTHO05D004607 1.7e-123 447.6 505 60.0
Carub.0002s2031 Capsella rubella HOM05D003766 ORTHO05D004607 1.1e-117 428.3 521 50.3
Pp3c19_15130 Physcomitrium patens HOM05D003766 ORTHO05D004607 1.0e-115 421.8 516 57.4
TAR629G3071 Trochodendron aralioides HOM05D003766 ORTHO05D004607 6.6e-115 419.1 248 81.0
vmacro17777 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 2.9e-110 403.7 269 75.1
BcaC07g36877 Brassica carinata HOM05D003766 ORTHO05D004607 2.3e-104 384.0 280 73.9
TAR629G0485 Trochodendron aralioides HOM05D003766 ORTHO05D004607 1.7e-99 367.9 285 65.6
Aqoxy3G00039 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 6.2e-97 359.4 485 63.1
vmacro17776 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 1.6e-92 344.7 307 59.9
AagrBONN_evm.TU.Sc2ySwM_228.854 Anthoceros agrestis HOM05D003766 ORTHO05D004607 9.9e-87 325.5 476 53.6
BcaC04g22654 Brassica carinata HOM05D003766 ORTHO05D004607 1.3e-86 325.1 188 86.2
BcaB05g24801 Brassica carinata HOM05D003766 ORTHO05D004607 4.2e-85 320.1 248 66.5
COL.COLO4_04795 Corchorus olitorius HOM05D003766 ORTHO05D004607 7.6e-79 299.3 199 72.9
HPP92_011088 Vanilla planifolia HOM05D003766 ORTHO05D004607 6.0e-76 289.7 304 85.2
Zm00001eb398230 Zea mays HOM05D003766 ORTHO05D004607 2.5e-74 284.3 306 51.3
C02p31190 Brassica napus HOM05D003766 ORTHO05D004607 1.4e-69 268.5 294 49.0
BolC2t09163H Brassica oleracea HOM05D003766 ORTHO05D004607 6.0e-68 263.1 319 72.7
BolC7t40944H Brassica oleracea HOM05D003766 ORTHO05D004607 1.5e-66 258.5 139 92.1
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 4.9e-62 243.4 284 50.4
Atru.chr9.1718 Acer truncatum HOM05D003766 ORTHO05D004607 2.8e-57 227.6 164 68.3
C09p56670 Brassica napus HOM05D003766 ORTHO05D004607 7.1e-53 213.0 111 92.8
BolC1t04841H Brassica oleracea HOM05D003766 ORTHO05D004607 2.3e-51 208.0 111 91.0
C02p31200 Brassica napus HOM05D003766 ORTHO05D004607 8.7e-51 206.1 192 56.2
QL10p029813 Quercus lobata HOM05D003766 ORTHO05D004607 3.1e-48 197.6 292 43.5
HPP92_011087 Vanilla planifolia HOM05D003766 ORTHO05D004607 1.7e-46 191.8 216 47.7
Actinidia35129 Actinidia chinensis HOM05D003766 ORTHO05D004607 1.8e-40 171.8 289 75.1
Dinv12692 Davidia involucrata HOM05D003766 ORTHO05D004607 2.2e-38 164.9 83 89.2
QL10p030223 Quercus lobata HOM05D003766 ORTHO05D004607 3.0e-35 154.5 167 49.7
COL.COLO4_04913 Corchorus olitorius HOM05D003766 ORTHO05D004607 2.0e-34 151.8 178 49.4
Sp5g28740 Schrenkiella parvula HOM05D000408 ORTHO05D004607 2.0e-34 151.8 147 55.1
Cre03.g197400 Chlamydomonas reinhardtii HOM05D003766 ORTHO05D004607 2.2e-33 148.3 579 32.3
MCO08G236 Micromonas commoda HOM05D003766 ORTHO05D004607 5.9e-31 140.2 170 49.4
CBR_g40334 Chara braunii HOM05D000019 ORTHO05D000002 7.7e-31 139.8 322 53.7
Hma1.2p1_2524F.1_g323905 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 2.0e-26 125.2 102 58.8
Cfa023117 Carpinus fangiana HOM05D016742 ORTHO05D028589 2.6e-26 124.8 527 31.3
Hma1.2p1_0759F.1_g213970 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 5.7e-26 123.6 95 62.1
Hma1.2p1_0502F.1_g167690 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 2.8e-25 121.3 111 55.0
Hma1.2p1_0127F.1_g059480 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 4.8e-25 120.6 102 58.8
C08p01510 Brassica napus HOM05D003766 ORTHO05D004607 8.2e-25 119.8 69 84.1
BraA05t20732Z Brassica rapa HOM05D003766 ORTHO05D004607 7.0e-24 116.7 68 83.8
PRCOL_00002904 Prasinoderma coloniale HOM05D003766 ORTHO05D004607 1.2e-23 115.9 190 35.8
BolC9t56024H Brassica oleracea HOM05D021712 ORTHO05D021656 7.7e-23 113.2 84 71.4
A05p35970 Brassica napus HOM05D003766 ORTHO05D004607 8.5e-22 109.8 72 77.8
C01p48850 Brassica napus HOM05D003766 ORTHO05D024562 8.5e-22 109.8 75 81.3
C07p05440 Brassica napus HOM05D003766 ORTHO05D004607 1.9e-21 108.6 75 81.3
C08p01500 Brassica napus HOM05D003766 ORTHO05D004607 3.2e-21 107.8 75 80.0
A05p35980 Brassica napus HOM05D003766 ORTHO05D024562 5.5e-21 107.1 75 78.7
BraA05t22404Z Brassica rapa HOM05D003766 ORTHO05D024562 5.5e-21 107.1 75 78.7
A05p18430 Brassica napus HOM05D003766 ORTHO05D024562 6.1e-20 103.6 75 77.3
C09p31690 Brassica napus HOM05D021712 ORTHO05D021656 6.1e-20 103.6 66 75.8
BraA05t20733Z Brassica rapa HOM05D003766 ORTHO05D024562 6.1e-20 103.6 75 77.3
A02p21490 Brassica napus HOM05D021712 ORTHO05D021656 8.3e-17 93.2 68 69.1
A05p18420 Brassica napus HOM05D017138 ORTHO05D016749 9.1e-16 89.7 59 74.6
C07p05430 Brassica napus HOM05D003766 ORTHO05D016749 5.9e-15 87.0 49 83.7
A02p18780 Brassica napus HOM05D003766 ORTHO05D004607 1.0e-14 86.3 84 59.5
BolC2t09162H Brassica oleracea HOM05D003766 ORTHO05D004607 2.2e-14 85.1 113 38.9
BcaC04g21445 Brassica carinata HOM05D000349 ORTHO05D001782 1.1e-13 82.8 64 70.3
CBR_g40333 Chara braunii HOM05D003766 ORTHO05D004607 2.5e-13 81.6 118 39.8
Oeu002213.1 Olea europaea HOM05D003766 ORTHO05D004607 7.2e-13 80.1 155 36.8
A02p18790 Brassica napus HOM05D003766 ORTHO05D004607 4.7e-12 77.4 118 41.5
Hma1.2p1_0478F.1_g161250 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 4.7e-12 77.4 68 54.4
BraA05t22403Z Brassica rapa HOM05D003766 ORTHO05D004607 1.0e-11 76.3 45 80.0
Glyma.15G140700 Glycine max HOM05D003766 ORTHO05D004607 7.0e-08 63.5 72 43.1
Hma1.2p1_0632F.1_g192420 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 2.7e-07 61.6 54 48.1
EL10Ac8g19330 Beta vulgaris HOM05D003766 ORTHO05D004607 3.5e-07 61.2 68 48.5
Oeu049536.1 Olea europaea HOM05D003766 ORTHO05D004607 6.6e-06 57.0 192 28.6


User provided reference genes

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