Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR011000 Cardamine hirsuta HOM05D005359 ORTHO05D006431 3.0e-243 844.7 419 100.0
AL1G21710 Arabidopsis lyrata HOM05D005359 ORTHO05D006431 4.6e-212 741.1 419 86.4
AT1G10780 Arabidopsis thaliana HOM05D005359 ORTHO05D006431 7.4e-210 733.8 419 85.4
Carub.0001s1033 Capsella rubella HOM05D005359 ORTHO05D006431 3.1e-208 728.4 419 84.5
Sp1g09480 Schrenkiella parvula HOM05D005359 ORTHO05D006431 4.2e-205 718.0 419 83.3
BraA09t41824Z Brassica rapa HOM05D005359 ORTHO05D006431 7.9e-204 713.8 419 82.6
A09p64680 Brassica napus HOM05D005359 ORTHO05D006431 2.3e-203 712.2 419 82.6
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 3.0e-203 711.8 419 83.8
C08p48500 Brassica napus HOM05D005359 ORTHO05D006431 1.5e-202 709.5 419 81.9
BolC8t52390H Brassica oleracea HOM05D005359 ORTHO05D006431 1.5e-202 709.5 419 81.9
Aa31LG1G4050 Aethionema arabicum HOM05D005359 ORTHO05D006431 5.3e-192 674.5 420 79.0
THA.LOC104819321 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 3.3e-173 612.1 421 72.9
THA.LOC104809588 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 2.2e-169 599.4 420 71.2
Cpa.g.sc113.63 Carica papaya HOM05D005359 ORTHO05D006431 5.0e-166 588.2 420 67.1
Prupe.1G568000 Prunus persica HOM05D005359 ORTHO05D006431 6.6e-166 587.8 420 67.9
Eucgr.I02722 Eucalyptus grandis HOM05D005359 ORTHO05D006431 1.9e-165 586.3 420 67.1
Manes.07G015400 Manihot esculenta HOM05D005359 ORTHO05D006431 4.3e-165 585.1 420 66.7
PGR042G0198 Punica granatum HOM05D005359 ORTHO05D006431 2.8e-164 582.4 420 67.1
Thecc.02G038700 Theobroma cacao HOM05D005359 ORTHO05D006431 3.6e-164 582.0 420 67.1
COL.COLO4_17869 Corchorus olitorius HOM05D005359 ORTHO05D006431 4.7e-164 581.6 420 66.0
Ciclev10001293m.g Citrus clementina HOM05D005359 ORTHO05D006431 8.0e-164 580.9 420 67.6
Gorai.008G042100 Gossypium raimondii HOM05D005359 ORTHO05D006431 8.0e-164 580.9 420 67.1
Gohir.D01G169300 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.0e-163 580.5 420 66.9
Gorai.002G210900 Gossypium raimondii HOM05D005359 ORTHO05D006431 1.4e-163 580.1 420 66.9
RcHm_v2.0_Chr7g0222501 Rosa chinensis HOM05D005359 ORTHO05D006431 1.4e-163 580.1 420 67.1
CiPaw.06G147600 Carya illinoinensis HOM05D005359 ORTHO05D006431 2.3e-163 579.3 420 66.9
Duzib052G1228 Durio zibethinus HOM05D005359 ORTHO05D006431 6.8e-163 577.8 420 66.7
Dinv19364 Davidia involucrata HOM05D005359 ORTHO05D006431 1.5e-162 576.6 420 66.7
Gohir.D12G040400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.5e-162 576.6 420 66.7
Gohir.A12G031900 Gossypium hirsutum HOM05D005359 ORTHO05D006431 4.4e-162 575.1 420 66.0
MD15G1422700 Malus domestica HOM05D005359 ORTHO05D006431 5.8e-162 574.7 420 66.2
TWI14G1253 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 1.3e-161 573.5 420 66.7
Gohir.A01G178400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 2.9e-161 572.4 420 66.0
Medtr2g007220 Medicago truncatula HOM05D005359 ORTHO05D006431 2.9e-161 572.4 420 65.5
Potri.003G019400 Populus trichocarpa HOM05D005359 ORTHO05D006431 3.7e-161 572.0 420 67.1
Sabra01G0162800 Salix brachista HOM05D005359 ORTHO05D006431 4.9e-161 571.6 420 66.0
QL08p043348 Quercus lobata HOM05D005359 ORTHO05D006431 6.4e-161 571.2 419 66.8
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 8.3e-161 570.9 420 67.1
Sabra03G0010900 Salix brachista HOM05D005359 ORTHO05D006431 8.3e-161 570.9 420 66.7
arahy.Tifrunner.gnm1.ann1.HK0KDN Arachis hypogaea HOM05D005359 ORTHO05D006431 3.2e-160 568.9 420 66.7
arahy.Tifrunner.gnm1.ann1.8TZ9EP Arachis hypogaea HOM05D005359 ORTHO05D006431 4.1e-160 568.5 420 66.4
Haze_01666 Corylus avellana HOM05D005359 ORTHO05D006431 4.1e-160 568.5 420 66.9
FAN08G1144 Fragaria x ananassa HOM05D005359 ORTHO05D006431 5.4e-160 568.2 420 66.0
FvH4_5g29550 Fragaria vesca HOM05D005359 ORTHO05D006431 9.2e-160 567.4 420 65.7
TWI23G0911 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 2.0e-159 566.2 420 65.5
Glyma.15G046900 Glycine max HOM05D005359 ORTHO05D006431 2.7e-159 565.8 420 66.0
FAN18G3183 Fragaria x ananassa HOM05D005359 ORTHO05D006431 3.5e-159 565.5 420 65.5
Potri.001G210800 Populus trichocarpa HOM05D005359 ORTHO05D006431 1.0e-158 563.9 420 66.0
CANSAT11G0924 Cannabis sativa HOM05D005359 ORTHO05D006431 1.3e-158 563.5 420 65.2
Psat2g122240 Pisum sativum HOM05D005359 ORTHO05D006431 1.3e-158 563.5 420 63.6
Oeu008891.1 Olea europaea HOM05D005359 ORTHO05D006431 3.0e-158 562.4 420 66.0
FAN13G1157 Fragaria x ananassa HOM05D005359 ORTHO05D006431 5.0e-158 561.6 420 65.0
Glyma.05G169600 Glycine max HOM05D005359 ORTHO05D006431 5.0e-158 561.6 421 65.1
Lj6g0011599 Lotus japonicus HOM05D005359 ORTHO05D006431 5.0e-158 561.6 420 65.2
Dinv24279 Davidia involucrata HOM05D005359 ORTHO05D006431 2.5e-157 559.3 420 65.5
VMungo0251G3193 Vigna mungo HOM05D005359 ORTHO05D006431 2.5e-157 559.3 420 64.5
CsaV3_6G037270 Cucumis sativus L. HOM05D005359 ORTHO05D006431 3.3e-157 558.9 420 64.8
Glyma.08G185900 Glycine max HOM05D005359 ORTHO05D006431 3.3e-157 558.9 420 65.0
TPR.G2126 Trifolium pratense HOM05D005359 ORTHO05D006431 4.3e-157 558.5 420 64.5
TAR628G1654 Trochodendron aralioides HOM05D005359 ORTHO05D006431 4.3e-157 558.5 420 65.2
Ca_00078_v3 Cicer arietinum L. HOM05D005359 ORTHO05D006431 5.6e-157 558.1 419 63.7
Lj4g0002358 Lotus japonicus HOM05D005359 ORTHO05D006431 9.5e-157 557.4 425 64.2
Sed0010360 Sechium edule HOM05D005359 ORTHO05D006431 1.2e-156 557.0 420 65.2
Lj5A252T45 Lonicera japonica HOM05D005359 ORTHO05D006431 1.6e-156 556.6 420 64.8
Glyma.08G127900 Glycine max HOM05D005359 ORTHO05D006431 3.6e-156 555.4 421 65.1
CSS0002632 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 4.7e-156 555.1 420 63.8
ClCG09G014240 Citrullus lanatus HOM05D005359 ORTHO05D006431 4.7e-156 555.1 420 65.0
Phvul.002G250300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 8.1e-156 554.3 420 63.8
CSS0043414 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 1.4e-155 553.5 420 63.6
CANSAT11G2649 Cannabis sativa HOM05D005359 ORTHO05D006431 1.8e-155 553.1 421 64.6
VMungo0540G0616 Vigna mungo HOM05D005359 ORTHO05D006431 1.8e-155 553.1 420 63.6
Rhsim11G0129700 Rhododendron simsii HOM05D005359 ORTHO05D006431 6.8e-155 551.2 420 63.6
vmacro01763 Vaccinium macrocarpon HOM05D005359 ORTHO05D006431 3.4e-154 548.9 420 63.3
Cc02_g22460 Coffea canephora HOM05D005359 ORTHO05D006431 5.8e-154 548.1 420 62.9
SalBow6G6401 Salvia bowleyana HOM05D005359 ORTHO05D006431 5.8e-154 548.1 420 62.6
MELO3C014388.2 Cucumis melo HOM05D005359 ORTHO05D006431 1.7e-153 546.6 412 64.3
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 2.2e-153 546.2 408 64.5
Lsat_1_v5_gn_5_109981 Lactuca sativa HOM05D005359 ORTHO05D006431 2.9e-153 545.8 421 62.7
MSTRG.5231 Avicennia marina HOM05D005359 ORTHO05D006431 4.9e-153 545.0 420 62.9
Nn5g28206 Nelumbo nucifera HOM05D005359 ORTHO05D006431 5.4e-152 541.6 420 63.1
Phvul.006G214300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 5.4e-152 541.6 421 63.2
TAR376G0200 Trochodendron aralioides HOM05D005359 ORTHO05D006431 5.4e-152 541.6 420 63.3
AUR62002965 Chenopodium quinoa HOM05D005359 ORTHO05D006431 9.2e-152 540.8 425 61.4
EL10Ac6g14556 Beta vulgaris HOM05D005359 ORTHO05D006431 1.2e-151 540.4 425 61.6
AUR62007773 Chenopodium quinoa HOM05D005359 ORTHO05D006431 1.2e-151 540.4 425 61.9
Hund05788 Selenicereus undatus HOM05D005359 ORTHO05D006431 2.1e-151 539.7 423 62.9
MD08G1228700 Malus domestica HOM05D005359 ORTHO05D006431 4.6e-151 538.5 402 64.7
DCAR_013987 Daucus carota HOM05D005359 ORTHO05D006431 8.6e-150 534.3 421 62.5
HanXRQChr10g0289981 Helianthus annuus HOM05D005359 ORTHO05D006431 1.1e-149 533.9 420 61.2
DCAR_031890 Daucus carota HOM05D005359 ORTHO05D006431 1.5e-149 533.5 407 63.6
HanXRQChr16g0514561 Helianthus annuus HOM05D005359 ORTHO05D006431 1.5e-149 533.5 420 61.9
Peaxi162Scf00011g00352 Petunia axillaris HOM05D005359 ORTHO05D006431 2.5e-149 532.7 421 63.7
GSVIVG01022967001 Vitis vinifera HOM05D005359 ORTHO05D006431 2.1e-148 529.6 423 62.6
Nitab4.5_0007420g0030 Nicotiana tabacum HOM05D005359 ORTHO05D006431 6.2e-148 528.1 421 63.2
Migut.N01041 Erythranthe guttata HOM05D005359 ORTHO05D006431 3.1e-147 525.8 420 61.7
HanXRQChr06g0169581 Helianthus annuus HOM05D005359 ORTHO05D006431 4.0e-147 525.4 420 61.9
ECA234G2063 Erigeron canadensis HOM05D005359 ORTHO05D006431 5.2e-147 525.0 420 60.5
Sc16g0001650 Simmondsia chinensis HOM05D005359 ORTHO05D006431 2.0e-146 523.1 424 61.8
Lalb_Chr20g0123431 Lupinus albus HOM05D005359 ORTHO05D006431 1.3e-145 520.4 420 60.2
Aqoxy5G02275 Aquilegia oxysepala HOM05D005359 ORTHO05D006431 7.8e-143 511.1 422 60.7
CiPaw.05G044000 Carya illinoinensis HOM05D005359 ORTHO05D006431 1.7e-142 510.0 420 61.4
unitig_26.g9020 Utricularia gibba HOM05D005359 ORTHO05D006431 1.2e-140 503.8 420 59.5
Nitab4.5_0002245g0060 Nicotiana tabacum HOM05D005359 ORTHO05D006431 6.9e-139 498.0 421 61.3
ECA236G4790 Erigeron canadensis HOM05D005359 ORTHO05D006431 1.6e-135 486.9 377 62.9
MBI06_g20718_MAGBIO Magnolia biondii HOM05D005359 ORTHO05D006431 3.5e-135 485.7 420 56.9
Sopen01g046670 Solanum pennellii HOM05D005359 ORTHO05D006431 1.3e-134 483.8 420 58.8
PGSC0003DMG400023758 Solanum tuberosum HOM05D005359 ORTHO05D006431 1.7e-134 483.4 420 59.0
Lalb_Chr07g0185731 Lupinus albus HOM05D005359 ORTHO05D006431 2.3e-134 483.0 421 57.0
CAN.G1577.14 Capsicum annuum HOM05D005359 ORTHO05D006431 1.1e-133 480.7 421 58.4
Sed0018525 Sechium edule HOM05D005359 ORTHO05D006431 1.9e-133 479.9 420 56.2
ATR0193G009 Amborella trichopoda HOM05D005359 ORTHO05D006431 5.6e-133 478.4 420 56.0
Ah.03g138120 Amaranthus hybridus HOM05D005359 ORTHO05D006431 1.6e-124 450.3 425 52.9
Os09g0454300 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 1.2e-122 444.1 421 53.4
Solyc01g104230.4 Solanum lycopersicum HOM05D005359 ORTHO05D006431 4.2e-120 435.6 356 62.1
Zm00001eb100430 Zea mays HOM05D005359 ORTHO05D006431 8.2e-116 421.4 405 52.3
Zm00001eb176520 Zea mays HOM05D005359 ORTHO05D006431 6.5e-113 411.8 425 50.6
Zm00001eb037840 Zea mays HOM05D005359 ORTHO05D006431 5.7e-109 398.7 425 49.2
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 1.5e-98 364.0 397 48.9
Mapoly0113s0005 Marchantia polymorpha HOM05D005359 ORTHO05D006431 3.4e-98 362.8 402 44.3
Os08g0469500 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 3.4e-98 362.8 422 46.2
Hma1.2p1_0217F.1_g092010 Hydrangea macrophylla HOM05D005359 ORTHO05D006431 7.7e-98 361.7 251 69.3
Thecc.02G038500 Theobroma cacao HOM05D005359 ORTHO05D006431 1.1e-96 357.8 282 61.3
Oeu033126.1 Olea europaea HOM05D005359 ORTHO05D006431 3.9e-86 322.8 303 56.4
AagrBONN_evm.TU.Sc2ySwM_117.2184 Anthoceros agrestis HOM05D005359 ORTHO05D006431 7.7e-82 308.5 374 42.0
SMO169G0280 Selaginella moellendorffii HOM05D005359 ORTHO05D006431 2.1e-79 300.4 404 41.8
HPP92_010977 Vanilla planifolia HOM05D005359 ORTHO05D006431 2.6e-77 293.5 298 49.3
Nn1g08733 Nelumbo nucifera HOM05D005359 ORTHO05D006431 6.3e-76 288.9 258 55.0
CDE11G1073 Ceratophyllum demersum HOM05D005359 ORTHO05D006431 6.1e-63 245.7 316 41.1
arahy.Tifrunner.gnm1.ann1.3FYK03 Arachis hypogaea HOM05D005359 ORTHO05D006431 3.3e-56 223.4 266 48.1
BcaC05g24954 Brassica carinata HOM05D005359 ORTHO05D006431 4.7e-55 219.5 162 70.4
Atru.chr6.646 Acer truncatum HOM05D005359 ORTHO05D006431 4.6e-50 203.0 133 71.4
Dinv24276 Davidia involucrata HOM05D005359 ORTHO05D006431 6.0e-42 176.0 131 64.9
arahy.Tifrunner.gnm1.ann1.BYQ4G2 Arachis hypogaea HOM05D005359 ORTHO05D006431 3.3e-32 143.7 98 71.4
arahy.Tifrunner.gnm1.ann1.94J17Q Arachis hypogaea HOM05D005359 ORTHO05D006431 8.9e-30 135.6 90 72.2
arahy.Tifrunner.gnm1.ann1.E0G9L5 Arachis hypogaea HOM05D005359 ORTHO05D006431 4.0e-22 110.2 73 69.9
Oeu056678.1 Olea europaea HOM05D005359 ORTHO05D006431 6.9e-22 109.4 79 64.6
arahy.Tifrunner.gnm1.ann1.B308TG Arachis hypogaea HOM05D005359 ORTHO05D006431 9.0e-22 109.0 70 71.4
MSTRG.27843 Avicennia marina HOM05D005359 ORTHO05D006431 2.2e-20 104.4 100 54.0
arahy.Tifrunner.gnm1.ann1.F717DE Arachis hypogaea HOM05D005359 ORTHO05D006431 2.9e-20 104.0 70 70.0
arahy.Tifrunner.gnm1.ann1.HDLM7U Arachis hypogaea HOM05D005359 ORTHO05D006431 4.2e-19 100.1 70 68.6
arahy.Tifrunner.gnm1.ann1.X0Q2J1 Arachis hypogaea HOM05D005359 ORTHO05D006431 4.2e-19 100.1 70 68.6
Sc12g0004500 Simmondsia chinensis HOM05D003488 ORTHO05D004214 1.0e-09 68.9 377 23.1
Prupe.7G111200 Prunus persica HOM05D003488 ORTHO05D004214 1.8e-09 68.2 310 23.5
HanXRQChr03g0060651 Helianthus annuus HOM05D006588 ORTHO05D008272 3.3e-08 63.9 239 25.9
HanXRQChr03g0060671 Helianthus annuus HOM05D006588 ORTHO05D008272 3.3e-08 63.9 239 25.9
HanXRQChr03g0060681 Helianthus annuus HOM05D006588 ORTHO05D008272 4.3e-08 63.5 239 25.9
SalBow3G3938 Salvia bowleyana HOM05D003488 ORTHO05D004214 9.6e-08 62.4 423 24.1
MD14G1022200 Malus domestica HOM05D003488 ORTHO05D004214 1.3e-07 62.0 310 22.9
HanXRQChr02g0054781 Helianthus annuus HOM05D003488 ORTHO05D004214 1.6e-07 61.6 339 21.8
Rhsim03G0075900 Rhododendron simsii HOM05D003488 ORTHO05D004214 1.6e-07 61.6 309 22.3
Aqoxy4G02784 Aquilegia oxysepala HOM05D003488 ORTHO05D004214 2.1e-07 61.2 312 23.4
Cfa016600 Carpinus fangiana HOM05D003488 ORTHO05D004214 2.1e-07 61.2 309 23.0
Actinidia35463 Actinidia chinensis HOM05D003488 ORTHO05D004214 2.8e-07 60.8 309 21.7
PGR102G1638 Punica granatum HOM05D003488 ORTHO05D004214 2.8e-07 60.8 282 23.8
Solyc07g064260.2 Solanum lycopersicum HOM05D000051 ORTHO05D000015 2.8e-07 60.8 231 27.3
HPP92_017621 Vanilla planifolia HOM05D000576 ORTHO05D000368 2.8e-07 60.8 283 27.2
Manes.09G056000 Manihot esculenta HOM05D003488 ORTHO05D004214 3.7e-07 60.5 282 24.8
Mapoly0037s0051 Marchantia polymorpha HOM05D003488 ORTHO05D004214 3.7e-07 60.5 352 23.3
AUR62021589 Chenopodium quinoa HOM05D003488 ORTHO05D004214 6.2e-07 59.7 190 26.8
HanXRQChr13g0397431 Helianthus annuus HOM05D003488 ORTHO05D004214 6.2e-07 59.7 376 20.5
Sopen07g032410 Solanum pennellii HOM05D000051 ORTHO05D000015 8.1e-07 59.3 232 28.0
CBR_g31165 Chara braunii HOM05D019043 ORTHO05D020397 1.4e-06 58.5 296 25.0
Rhsim01G0205200 Rhododendron simsii HOM05D003488 ORTHO05D004214 1.8e-06 58.2 309 21.0
AUR62006173 Chenopodium quinoa HOM05D003488 ORTHO05D004214 2.4e-06 57.8 190 26.8
Actinidia31274 Actinidia chinensis HOM05D003488 ORTHO05D004214 4.0e-06 57.0 303 22.1
Ca_08884_v3 Cicer arietinum L. HOM05D003488 ORTHO05D004214 5.3e-06 56.6 297 21.2
Dinv15564 Davidia involucrata HOM05D000312 ORTHO05D000221 5.3e-06 56.6 281 19.6
RcHm_v2.0_Chr3g0473131 Rosa chinensis HOM05D003488 ORTHO05D004214 6.9e-06 56.2 190 26.3
RcHm_v2.0_Chr5g0028461 Rosa chinensis HOM05D000051 ORTHO05D000015 6.9e-06 56.2 196 25.5


User provided reference genes

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