Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR007830 Cardamine hirsuta HOM05D001636 ORTHO05D011036 8.3e-34 146.4 69 100.0
CARHR005160 Cardamine hirsuta HOM05D001456 ORTHO05D011036 1.6e-21 105.5 69 71.0
AL1G45330 Arabidopsis lyrata HOM05D001456 ORTHO05D011036 2.4e-17 91.7 69 66.7
AL3G48630 Arabidopsis lyrata HOM05D001456 ORTHO05D013186 1.0e-15 86.3 68 57.4
AL1G15310 Arabidopsis lyrata HOM05D001636 ORTHO05D011036 1.3e-15 85.9 68 60.3
AL1G16270 Arabidopsis lyrata HOM05D001456 ORTHO05D011036 1.1e-14 82.8 69 56.5
AT4G20480 Arabidopsis thaliana HOM05D001636 ORTHO05D018439 4.3e-14 80.9 69 55.1
Carub.0006s3667 Capsella rubella HOM05D001636 ORTHO05D013186 4.8e-13 77.4 66 56.1
AL6G52880 Arabidopsis lyrata HOM05D001636 ORTHO05D013186 1.4e-12 75.9 66 53.0
AL1G14200 Arabidopsis lyrata HOM05D001636 ORTHO05D013186 1.8e-12 75.5 67 52.2
CARHR005970 Cardamine hirsuta HOM05D001636 ORTHO05D011036 1.8e-12 75.5 51 64.7
AL5G10320 Arabidopsis lyrata HOM05D001456 ORTHO05D001571 5.3e-12 73.9 67 47.8
Carub.0002s0629 Capsella rubella HOM05D001636 ORTHO05D013186 5.3e-12 73.9 67 49.3
Carub.0002s0630 Capsella rubella HOM05D001456 ORTHO05D013186 5.3e-12 73.9 67 50.7
Carub.0001s4175 Capsella rubella HOM05D001636 ORTHO05D013186 2.0e-11 72.0 68 54.4
Carub.0033s0006 Capsella rubella HOM05D001636 ORTHO05D013186 2.6e-11 71.6 67 52.2
AL1G11960 Arabidopsis lyrata HOM05D001456 ORTHO05D013186 3.4e-11 71.2 67 52.2
Carub.0008s0517 Capsella rubella HOM05D001636 ORTHO05D013186 3.4e-11 71.2 64 48.4
BcaNung01309 Brassica carinata HOM05D001456 ORTHO05D031996 4.5e-11 70.9 69 49.3
C01p00030 Brassica napus HOM05D001456 ORTHO05D031996 4.5e-11 70.9 69 49.3
BolC1t00009H Brassica oleracea HOM05D001456 ORTHO05D031996 4.5e-11 70.9 69 49.3
Carub.0005s2203 Capsella rubella HOM05D001636 ORTHO05D013186 4.5e-11 70.9 68 52.9
Carub.0008s0675 Capsella rubella HOM05D001636 ORTHO05D013186 4.5e-11 70.9 67 52.2
CARHR000960 Cardamine hirsuta HOM05D001456 ORTHO05D018439 4.5e-11 70.9 63 52.4
CARHR179320 Cardamine hirsuta HOM05D001456 ORTHO05D011036 7.6e-11 70.1 67 52.2
Carub.0001s0454 Capsella rubella HOM05D001636 ORTHO05D013186 1.3e-10 69.3 69 42.0
CARHR012810 Cardamine hirsuta HOM05D001636 ORTHO05D011036 1.7e-10 68.9 63 50.8
C08p49410 Brassica napus HOM05D001456 ORTHO05D011036 3.8e-10 67.8 69 46.4
BolC8t52477H Brassica oleracea HOM05D001456 ORTHO05D011036 3.8e-10 67.8 69 46.4
AL5G23770 Arabidopsis lyrata HOM05D001456 ORTHO05D011036 6.4e-10 67.0 69 44.9
A09p65440 Brassica napus HOM05D001636 ORTHO05D011036 6.4e-10 67.0 69 47.8
BraA09t41889Z Brassica rapa HOM05D001636 ORTHO05D011036 6.4e-10 67.0 69 47.8
AL3G38360 Arabidopsis lyrata HOM05D001636 ORTHO05D018456 1.1e-09 66.2 66 47.0
AL8G26350 Arabidopsis lyrata HOM05D001456 ORTHO05D011036 1.1e-09 66.2 67 46.3
BcaC02g09873 Brassica carinata HOM05D001456 ORTHO05D032772 1.1e-09 66.2 65 49.2
BolC4t25235H Brassica oleracea HOM05D001456 ORTHO05D011036 1.1e-09 66.2 65 49.2
Thhalv10012128m.g Eutrema salsugineum HOM05D001456 ORTHO05D002799 1.1e-09 66.2 69 46.4
Carub.0001s0200 Capsella rubella HOM05D001636 ORTHO05D013186 1.4e-09 65.9 69 47.8
BraA05t18996Z Brassica rapa HOM05D001636 ORTHO05D018456 2.4e-09 65.1 68 47.1
Thhalv10019735m.g Eutrema salsugineum HOM05D001456 ORTHO05D009134 4.2e-09 64.3 68 45.6
AL9U10980 Arabidopsis lyrata HOM05D062308 ORTHO05D009134 5.4e-09 63.9 69 44.9
BcaB07g32632 Brassica carinata HOM05D001456 ORTHO05D011036 5.4e-09 63.9 66 47.0
Carub.0007s3262 Capsella rubella HOM05D001636 ORTHO05D011036 5.4e-09 63.9 67 46.3
BcaB06g29167 Brassica carinata HOM05D001636 ORTHO05D009134 7.1e-09 63.5 66 45.5
BcaC07g41874 Brassica carinata HOM05D001456 ORTHO05D011036 1.2e-08 62.8 69 46.4
C04p00350 Brassica napus HOM05D001636 ORTHO05D018456 1.2e-08 62.8 68 45.6
BolC4t21677H Brassica oleracea HOM05D001636 ORTHO05D018456 1.2e-08 62.8 68 45.6
CARHR008560 Cardamine hirsuta HOM05D001636 ORTHO05D011036 1.2e-08 62.8 64 46.9
Sed0015340 Sechium edule HOM05D001456 ORTHO05D002799 1.2e-08 62.8 69 42.0
AL1G17090 Arabidopsis lyrata HOM05D001456 ORTHO05D013186 1.6e-08 62.4 66 42.4
BcaC02g12800 Brassica carinata HOM05D001636 ORTHO05D018456 1.6e-08 62.4 68 45.6
BNapus_Darmor_BZH_scaffold_188p00110 Brassica napus HOM05D001636 ORTHO05D018456 1.6e-08 62.4 68 45.6
AT5G61190 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 2.1e-08 62.0 69 40.6
Thhalv10003670m.g Eutrema salsugineum HOM05D001456 ORTHO05D014991 2.1e-08 62.0 69 40.6
Carub.0006s0379 Capsella rubella HOM05D001636 ORTHO05D009134 2.7e-08 61.6 68 44.1
CARHR070150 Cardamine hirsuta HOM05D001456 ORTHO05D009134 2.7e-08 61.6 67 46.3
Thhalv10005934m.g Eutrema salsugineum HOM05D001636 ORTHO05D009134 2.7e-08 61.6 65 41.5
Thhalv10024069m.g Eutrema salsugineum HOM05D001636 ORTHO05D009134 2.7e-08 61.6 68 44.1
BcaNung05633 Brassica carinata HOM05D001636 ORTHO05D009134 3.5e-08 61.2 64 45.3
Thhalv10017671m.g Eutrema salsugineum HOM05D001636 ORTHO05D011317 3.5e-08 61.2 69 44.9
BcaC09g50570 Brassica carinata HOM05D001636 ORTHO05D040027 4.6e-08 60.8 66 40.9
C01p23810 Brassica napus HOM05D001636 ORTHO05D040027 4.6e-08 60.8 66 40.9
C01p23820 Brassica napus HOM05D001636 ORTHO05D024225 4.6e-08 60.8 66 40.9
C07p44880 Brassica napus HOM05D001456 ORTHO05D014991 4.6e-08 60.8 69 43.5
BolSC55t61225H Brassica oleracea HOM05D001636 ORTHO05D018456 4.6e-08 60.8 68 44.1
AL1G35600 Arabidopsis lyrata HOM05D001636 ORTHO05D013186 6.0e-08 60.5 66 47.0
A02p41480 Brassica napus HOM05D001456 ORTHO05D002799 6.0e-08 60.5 69 42.0
BraA02t09089Z Brassica rapa HOM05D001456 ORTHO05D002799 6.0e-08 60.5 69 42.0
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 6.0e-08 60.5 67 38.8
A09p07250 Brassica napus HOM05D001456 ORTHO05D002799 7.9e-08 60.1 67 38.8
C02p61420 Brassica napus HOM05D001456 ORTHO05D014991 7.9e-08 60.1 69 42.0
BolC2t12194H Brassica oleracea HOM05D001456 ORTHO05D014991 7.9e-08 60.1 69 42.0
DCAR_018246 Daucus carota HOM05D001456 ORTHO05D002799 7.9e-08 60.1 69 40.6
DCAR_018247 Daucus carota HOM05D000103 ORTHO05D002799 7.9e-08 60.1 69 40.6
Thhalv10003587m.g Eutrema salsugineum HOM05D001456 ORTHO05D002799 7.9e-08 60.1 69 40.6
Sp2g24430 Schrenkiella parvula HOM05D001456 ORTHO05D002799 7.9e-08 60.1 69 39.1
AL5G21850 Arabidopsis lyrata HOM05D001456 ORTHO05D011036 1.0e-07 59.7 69 43.5
AL8G37850 Arabidopsis lyrata HOM05D001456 ORTHO05D002799 1.0e-07 59.7 69 39.1
AT1G24256 Arabidopsis thaliana HOM05D001636 ORTHO05D011036 1.0e-07 59.7 57 42.1
BcaC04g23460 Brassica carinata HOM05D001456 ORTHO05D002799 1.0e-07 59.7 67 38.8
C09p08100 Brassica napus HOM05D001456 ORTHO05D002799 1.0e-07 59.7 67 38.8
BolC9t53724H Brassica oleracea HOM05D001456 ORTHO05D002799 1.0e-07 59.7 67 38.8
Thhalv10017769m.g Eutrema salsugineum HOM05D001456 ORTHO05D011036 1.0e-07 59.7 69 44.9
BcaC06g33215 Brassica carinata HOM05D001456 ORTHO05D014991 1.3e-07 59.3 69 42.0
BolC7t45011H Brassica oleracea HOM05D001456 ORTHO05D014991 1.3e-07 59.3 69 42.0
A01p18890 Brassica napus HOM05D006174 ORTHO05D007987 1.8e-07 58.9 66 39.4
A03p46820 Brassica napus HOM05D001456 ORTHO05D014991 1.8e-07 58.9 69 40.6
A03p46830 Brassica napus HOM05D001456 ORTHO05D014991 1.8e-07 58.9 69 42.0
C07p44870 Brassica napus HOM05D001456 ORTHO05D014991 1.8e-07 58.9 69 40.6
BraA01t01830Z Brassica rapa HOM05D006174 ORTHO05D007987 1.8e-07 58.9 66 39.4
Carub.0008s2185 Capsella rubella HOM05D001456 ORTHO05D002799 1.8e-07 58.9 67 38.8
CARHR172550 Cardamine hirsuta HOM05D001456 ORTHO05D002799 1.8e-07 58.9 69 39.1
CARHR288830 Cardamine hirsuta HOM05D001456 ORTHO05D011036 1.8e-07 58.9 66 47.0
AL3G40410 Arabidopsis lyrata HOM05D001636 ORTHO05D009134 2.3e-07 58.5 65 40.0
BcaC02g12798 Brassica carinata HOM05D001636 ORTHO05D018456 2.3e-07 58.5 65 43.1
BcaC08g46204 Brassica carinata HOM05D001456 ORTHO05D009465 2.3e-07 58.5 69 39.1
C06p42210 Brassica napus HOM05D001456 ORTHO05D002799 2.3e-07 58.5 69 39.1
Carub.0001s0130 Capsella rubella HOM05D001456 ORTHO05D009134 2.3e-07 58.5 67 44.8
Thhalv10000121m.g Eutrema salsugineum HOM05D001636 ORTHO05D009134 2.3e-07 58.5 65 40.0
A01p41350 Brassica napus HOM05D001636 ORTHO05D033589 3.0e-07 58.2 67 38.8
BNapus_Darmor_BZH_scaffold_78p00360 Brassica napus HOM05D001636 ORTHO05D033589 3.0e-07 58.2 67 38.8
BolC6t39204H Brassica oleracea HOM05D001456 ORTHO05D002799 3.0e-07 58.2 69 39.1
BraA01t04560Z Brassica rapa HOM05D001636 ORTHO05D033589 3.0e-07 58.2 67 38.8
BcaB02g09721 Brassica carinata HOM05D001636 ORTHO05D009134 3.9e-07 57.8 65 38.5
BcaC03g14332 Brassica carinata HOM05D001636 ORTHO05D009134 3.9e-07 57.8 65 36.9
BcaC06g33174 Brassica carinata HOM05D001456 ORTHO05D014991 3.9e-07 57.8 70 42.9
THA.LOC104818337 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 3.9e-07 57.8 69 39.1
AT3G62850 Arabidopsis thaliana HOM05D001636 ORTHO05D009134 5.1e-07 57.4 64 39.1
BcaC02g09571 Brassica carinata HOM05D001636 ORTHO05D024225 5.1e-07 57.4 67 38.8
BcaNung04685 Brassica carinata HOM05D033825 ORTHO05D011036 5.1e-07 57.4 68 44.1
A03p50890 Brassica napus HOM05D001636 ORTHO05D009134 5.1e-07 57.4 64 40.6
A08p32940 Brassica napus HOM05D001636 ORTHO05D009134 5.1e-07 57.4 64 42.2
BolC4t26000H Brassica oleracea HOM05D001636 ORTHO05D024225 5.1e-07 57.4 67 38.8
BraA06t25197Z Brassica rapa HOM05D001636 ORTHO05D024225 5.1e-07 57.4 67 38.8
AL8G35170 Arabidopsis lyrata HOM05D001636 ORTHO05D009134 6.7e-07 57.0 65 40.0
AT1G06925 Arabidopsis thaliana HOM05D001636 ORTHO05D011036 6.7e-07 57.0 56 50.0
BcaC03g15053 Brassica carinata HOM05D001636 ORTHO05D009134 6.7e-07 57.0 65 36.9
C02p25960 Brassica napus HOM05D001636 ORTHO05D009134 6.7e-07 57.0 65 36.9
BolC1t05798H Brassica oleracea HOM05D001636 ORTHO05D011036 6.7e-07 57.0 67 40.3
BolC2t07887H Brassica oleracea HOM05D001636 ORTHO05D009134 6.7e-07 57.0 65 36.9
BolC2t08674H Brassica oleracea HOM05D001636 ORTHO05D009134 6.7e-07 57.0 65 36.9
CARHR113000 Cardamine hirsuta HOM05D001456 ORTHO05D011036 6.7e-07 57.0 70 44.3
AL4G13470 Arabidopsis lyrata HOM05D001636 ORTHO05D011036 8.7e-07 56.6 62 41.9
C02p17520 Brassica napus HOM05D001636 ORTHO05D009134 8.7e-07 56.6 65 36.9
BraA03t14176Z Brassica rapa HOM05D001636 ORTHO05D009134 8.7e-07 56.6 64 40.6
BraA08t33630Z Brassica rapa HOM05D001456 ORTHO05D002799 8.7e-07 56.6 69 37.7
BraA09t42126Z Brassica rapa HOM05D001456 ORTHO05D011036 8.7e-07 56.6 57 45.6
BcaB04g19904 Brassica carinata HOM05D001456 ORTHO05D002799 1.1e-06 56.2 67 37.3
BcaC01g00882 Brassica carinata HOM05D001456 ORTHO05D011036 1.1e-06 56.2 69 37.7
BcaC03g14330 Brassica carinata HOM05D001636 ORTHO05D009134 1.1e-06 56.2 65 36.9
C02p17550 Brassica napus HOM05D001636 ORTHO05D009134 1.1e-06 56.2 68 35.3
C03p85570 Brassica napus HOM05D001456 ORTHO05D002799 1.1e-06 56.2 69 37.7
BolC3t20845H Brassica oleracea HOM05D001456 ORTHO05D002799 1.1e-06 56.2 69 37.7
BolC7t45505H Brassica oleracea HOM05D001636 ORTHO05D009134 1.1e-06 56.2 64 42.2
BcaC06g33212 Brassica carinata HOM05D001456 ORTHO05D027445 1.5e-06 55.8 69 37.7
BcaC09g52273 Brassica carinata HOM05D001636 ORTHO05D009134 1.5e-06 55.8 66 40.9
A03p55270 Brassica napus HOM05D001636 ORTHO05D009134 1.5e-06 55.8 64 40.6
C07p44860 Brassica napus HOM05D001456 ORTHO05D027445 1.5e-06 55.8 69 37.7
BolC1t02221H Brassica oleracea HOM05D001636 ORTHO05D009134 1.5e-06 55.8 66 40.9
BolC1t03356H Brassica oleracea HOM05D001636 ORTHO05D009134 1.5e-06 55.8 66 40.9
BolC2t11826H Brassica oleracea HOM05D001636 ORTHO05D009134 1.5e-06 55.8 65 38.5
BolC7t45010H Brassica oleracea HOM05D001456 ORTHO05D027445 1.5e-06 55.8 69 37.7
BraA03t14586Z Brassica rapa HOM05D001636 ORTHO05D009134 1.5e-06 55.8 64 40.6
CARHR175440 Cardamine hirsuta HOM05D001636 ORTHO05D009134 1.5e-06 55.8 64 39.1
BcaC06g33211 Brassica carinata HOM05D001456 ORTHO05D002799 1.9e-06 55.5 69 37.7
A03p46800 Brassica napus HOM05D001456 ORTHO05D002799 1.9e-06 55.5 69 37.7
A08p16650 Brassica napus HOM05D001456 ORTHO05D002799 1.9e-06 55.5 69 37.7
C06p31460 Brassica napus HOM05D001456 ORTHO05D011036 1.9e-06 55.5 68 42.6
C07p44850 Brassica napus HOM05D001456 ORTHO05D002799 1.9e-06 55.5 69 37.7
BolC3t20841H Brassica oleracea HOM05D001456 ORTHO05D002799 1.9e-06 55.5 69 36.2
BolC7t45008H Brassica oleracea HOM05D001456 ORTHO05D002799 1.9e-06 55.5 69 37.7
BraA03t13802Z Brassica rapa HOM05D001456 ORTHO05D027445 1.9e-06 55.5 69 37.7
CARHR274920 Cardamine hirsuta HOM05D001456 ORTHO05D002799 1.9e-06 55.5 69 37.7
Thhalv10017693m.g Eutrema salsugineum HOM05D001456 ORTHO05D011317 1.9e-06 55.5 69 42.0
HanXRQChr03g0088751 Helianthus annuus HOM05D001456 ORTHO05D002799 1.9e-06 55.5 66 36.4
HanXRQChr03g0088761 Helianthus annuus HOM05D001456 ORTHO05D002799 1.9e-06 55.5 66 36.4
BcaC01g00880 Brassica carinata HOM05D001456 ORTHO05D011036 2.5e-06 55.1 69 36.2
BcaC06g33175 Brassica carinata HOM05D001456 ORTHO05D002799 2.5e-06 55.1 69 37.7
C03p85540 Brassica napus HOM05D001456 ORTHO05D002799 2.5e-06 55.1 69 36.2
Carub.0002s1385 Capsella rubella HOM05D001636 ORTHO05D009134 2.5e-06 55.1 64 35.9
Psat3g014920 Pisum sativum HOM05D001456 ORTHO05D002799 2.5e-06 55.1 66 37.9
BcaNung02680 Brassica carinata HOM05D001636 ORTHO05D009134 3.3e-06 54.7 64 39.1
C07p49300 Brassica napus HOM05D001636 ORTHO05D009134 3.3e-06 54.7 64 39.1
BolC7t45437H Brassica oleracea HOM05D001636 ORTHO05D009134 3.3e-06 54.7 64 39.1
A07p35040 Brassica napus HOM05D001636 ORTHO05D009134 4.3e-06 54.3 66 39.4
BolC6t39302H Brassica oleracea HOM05D001636 ORTHO05D009134 4.3e-06 54.3 66 39.4
Carub.0001s2926 Capsella rubella HOM05D001456 ORTHO05D002799 4.3e-06 54.3 69 37.7
Dinv24508 Davidia involucrata HOM05D001456 ORTHO05D002799 4.3e-06 54.3 66 36.4
AL5G45620 Arabidopsis lyrata HOM05D001636 ORTHO05D009134 5.6e-06 53.9 61 37.7
AT3G60940 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 5.6e-06 53.9 69 39.1
BcaC06g31371 Brassica carinata HOM05D001636 ORTHO05D009134 5.6e-06 53.9 64 40.6
BcaNung02002 Brassica carinata HOM05D001636 ORTHO05D009134 5.6e-06 53.9 64 37.5
BcaNung03075 Brassica carinata HOM05D001636 ORTHO05D009134 5.6e-06 53.9 64 39.1
A06p35510 Brassica napus HOM05D001636 ORTHO05D009134 5.6e-06 53.9 64 37.5
C07p43040 Brassica napus HOM05D001636 ORTHO05D009134 5.6e-06 53.9 64 37.5
C07p50280 Brassica napus HOM05D001636 ORTHO05D009134 5.6e-06 53.9 64 39.1
BolC7t44832H Brassica oleracea HOM05D001636 ORTHO05D009134 5.6e-06 53.9 64 37.5
BolC7t45530H Brassica oleracea HOM05D001636 ORTHO05D009134 5.6e-06 53.9 64 39.1
BraA06t26475Z Brassica rapa HOM05D001636 ORTHO05D009134 5.6e-06 53.9 64 37.5
Dinv24507 Davidia involucrata HOM05D001456 ORTHO05D002799 5.6e-06 53.9 66 36.4
BcaB03g11817 Brassica carinata HOM05D001456 ORTHO05D002799 7.4e-06 53.5 65 36.9
BcaB03g15112 Brassica carinata HOM05D001636 ORTHO05D009134 7.4e-06 53.5 65 35.4
BcaC06g33505 Brassica carinata HOM05D001636 ORTHO05D009134 7.4e-06 53.5 64 40.6
C07p48170 Brassica napus HOM05D001636 ORTHO05D009134 7.4e-06 53.5 64 40.6
BolC7t45340H Brassica oleracea HOM05D001636 ORTHO05D009134 7.4e-06 53.5 64 40.6
Carub.0003s0625 Capsella rubella HOM05D001636 ORTHO05D009134 7.4e-06 53.5 64 37.5
Carub.0008s0155 Capsella rubella HOM05D001636 ORTHO05D009134 7.4e-06 53.5 65 38.5
Phvul.001G217000 Phaseolus vulgaris HOM05D001456 ORTHO05D002799 7.4e-06 53.5 66 40.9
BolC5t32469H Brassica oleracea HOM05D001636 ORTHO05D009134 9.6e-06 53.1 64 39.1
CARHR002680 Cardamine hirsuta HOM05D001636 ORTHO05D018439 9.6e-06 53.1 69 42.0


User provided reference genes

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