Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 4.5e-196 688.0 407 100.0
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 3.8e-142 508.8 417 76.7
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 4.5e-135 485.3 421 75.1
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 3.0e-131 472.6 412 71.6
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 4.3e-114 415.6 411 68.4
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 2.2e-110 403.3 411 67.2
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 3.2e-109 399.4 421 66.0
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 3.2e-109 399.4 421 66.0
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 7.9e-108 394.8 428 64.7
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 2.3e-107 393.3 421 63.2
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 9.7e-106 387.9 415 62.9
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 6.3e-105 385.2 422 61.1
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 1.0e-102 377.9 432 58.1
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 2.9e-102 376.3 429 59.9
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 4.2e-101 372.5 410 57.6
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 4.4e-98 362.5 418 57.4
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 8.2e-97 358.2 412 57.5
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 1.4e-96 357.5 418 59.6
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 3.8e-94 349.4 421 56.8
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 6.5e-94 348.6 395 64.1
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 4.2e-93 345.9 419 57.0
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 9.4e-93 344.7 423 56.5
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 9.4e-93 344.7 423 56.5
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 9.7e-90 334.7 416 55.8
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 9.7e-90 334.7 416 55.8
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 9.7e-90 334.7 416 55.8
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 1.7e-89 334.0 417 56.4
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 7.0e-88 328.6 414 57.0
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 6.5e-86 322.0 421 54.2
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 6.5e-86 322.0 421 54.2
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 6.4e-65 252.3 405 47.7
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 7.0e-64 248.8 405 47.7
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 7.0e-64 248.8 420 47.4
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.2e-63 248.1 421 45.1
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 2.7e-63 246.9 421 45.1
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 1.3e-62 244.6 419 46.3
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 1.7e-62 244.2 421 44.4
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 3.0e-62 243.4 416 44.7
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 1.1e-61 241.5 411 45.3
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 1.6e-60 237.7 418 42.1
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 8.0e-60 235.3 410 44.1
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 2.0e-58 230.7 416 45.9
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 2.0e-58 230.7 415 43.1
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 8.3e-57 225.3 432 41.2
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 8.3e-57 225.3 410 43.2
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 8.3e-57 225.3 412 43.2
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 8.3e-57 225.3 421 45.4
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 1.9e-56 224.2 412 45.4
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 4.1e-56 223.0 422 45.0
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 9.2e-56 221.9 427 45.0
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 1.2e-55 221.5 419 41.5
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 1.2e-55 221.5 418 42.3
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 8.6e-54 215.3 439 43.7
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.1e-53 214.9 421 42.0
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 9.5e-53 211.8 423 42.1
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 2.1e-52 210.7 233 58.8
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 2.8e-52 210.3 426 43.7
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 6.2e-52 209.1 415 40.7
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 1.1e-51 208.4 407 44.5
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 1.4e-51 208.0 432 41.9
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 3.1e-51 206.8 404 45.0
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 3.1e-51 206.8 413 40.7
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 1.2e-50 204.9 419 41.1
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 1.5e-50 204.5 432 39.8
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 2.0e-50 204.1 414 39.6
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 3.4e-50 203.4 414 42.8
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 4.4e-50 203.0 434 44.2
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 4.4e-50 203.0 420 41.7
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 7.5e-50 202.2 414 39.6
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 1.7e-49 201.1 427 42.2
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 1.7e-49 201.1 419 41.1
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 1.7e-49 201.1 414 43.7
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 2.9e-49 200.3 419 44.6
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 1.1e-48 198.4 365 43.8
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 3.2e-48 196.8 398 46.0
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 3.2e-48 196.8 418 38.8
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 5.4e-48 196.1 408 42.2
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 7.1e-48 195.7 419 40.1
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 7.1e-48 195.7 414 39.9
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 7.1e-48 195.7 422 40.5
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 1.6e-47 194.5 416 43.5
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 2.1e-47 194.1 424 39.4
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 2.1e-47 194.1 421 38.7
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 4.6e-47 193.0 405 44.0
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 4.6e-47 193.0 415 40.0
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 6.0e-47 192.6 418 40.2
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 7.8e-47 192.2 413 40.2
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 1.3e-46 191.4 401 40.9
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 2.3e-46 190.7 405 40.2
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 3.9e-46 189.9 411 42.1
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 3.9e-46 189.9 418 40.4
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 5.1e-46 189.5 422 41.0
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 6.6e-46 189.1 371 44.2
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 1.1e-45 188.3 418 40.4
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 1.5e-45 188.0 418 42.1
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 3.3e-45 186.8 400 44.0
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 3.3e-45 186.8 408 40.2
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 4.3e-45 186.4 415 38.3
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 7.3e-45 185.7 419 37.9
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 2.8e-44 183.7 357 40.6
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 2.8e-44 183.7 414 38.2
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 6.2e-44 182.6 396 44.9
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 1.2e-42 178.3 411 40.9
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 2.6e-42 177.2 364 43.4
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 1.3e-41 174.9 458 38.2
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 3.8e-41 173.3 421 40.1
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 3.8e-41 173.3 422 38.2
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 8.4e-41 172.2 395 43.0
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 1.1e-40 171.8 437 39.1
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 2.4e-40 170.6 393 37.7
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 4.2e-40 169.9 265 47.9
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 5.4e-40 169.5 393 40.5
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 7.1e-40 169.1 368 40.8
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 2.1e-39 167.5 419 36.5
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 2.7e-39 167.2 418 36.8
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 2.7e-39 167.2 408 37.7
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 3.5e-39 166.8 393 40.5
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 1.3e-38 164.9 217 51.6
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 1.7e-38 164.5 426 38.0
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 1.5e-37 161.4 417 35.3
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 3.6e-36 156.8 171 59.6
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 4.8e-36 156.4 420 36.9
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 6.2e-36 156.0 357 37.5
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 7.6e-34 149.1 409 37.7
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 2.9e-33 147.1 129 66.7
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 3.2e-32 143.7 451 29.7
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 7.8e-31 139.0 361 36.6
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 1.5e-29 134.8 400 33.5
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 1.5e-29 134.8 374 32.4
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 4.5e-26 123.2 359 39.8
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 1.1e-24 118.6 409 32.8
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 1.1e-24 118.6 387 35.4
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 9.3e-24 115.5 422 31.5
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 9.6e-21 105.5 260 37.7
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 4.8e-20 103.2 304 39.8
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 1.4e-19 101.7 282 35.1
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 2.9e-17 94.0 354 31.4
CDE02G3939 Ceratophyllum demersum HOM05D005109 ORTHO05D006084 6.0e-15 86.3 80 57.5
Hund00596 Selenicereus undatus HOM05D005109 ORTHO05D006084 1.1e-13 82.0 189 38.6
Rhsim01G0262800 Rhododendron simsii HOM05D005109 ORTHO05D006084 1.9e-13 81.3 223 33.6
Lj1C67T4 Lonicera japonica HOM05D005109 ORTHO05D006084 2.5e-08 64.3 355 28.7


User provided reference genes

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