Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR002670 Cardamine hirsuta HOM05D000280 ORTHO05D116384 8.7e-27 122.9 61 100.0
Sp1g02340 Schrenkiella parvula HOM05D000280 ORTHO05D003998 2.8e-17 91.3 63 73.0
AL1G12860 Arabidopsis lyrata HOM05D000280 ORTHO05D003998 4.8e-17 90.5 60 75.0
Thhalv10007606m.g Eutrema salsugineum HOM05D000280 ORTHO05D003998 2.4e-16 88.2 63 69.8
Carub.0001s0246 Capsella rubella HOM05D000280 ORTHO05D003998 3.1e-16 87.8 60 75.0
THA.LOC104826002 Tarenaya hassleriana HOM05D000280 ORTHO05D003998 8.5e-14 79.7 64 71.9
Thhalv10028651m.g Eutrema salsugineum HOM05D000280 ORTHO05D003998 2.5e-13 78.2 63 65.1
Carub.0006s3415 Capsella rubella HOM05D000280 ORTHO05D003998 1.6e-12 75.5 62 62.9
CARHR251300 Cardamine hirsuta HOM05D000280 ORTHO05D003998 6.1e-12 73.6 63 61.9
AT4G02930 Arabidopsis thaliana HOM05D000280 ORTHO05D003998 1.8e-11 72.0 63 63.5
Sp6g02960 Schrenkiella parvula HOM05D000280 ORTHO05D003998 1.8e-11 72.0 63 63.5
THA.LOC104801215 Tarenaya hassleriana HOM05D000280 ORTHO05D003998 2.3e-11 71.6 64 65.6
Aa31LG5G2510 Aethionema arabicum HOM05D000280 ORTHO05D003998 6.7e-11 70.1 63 58.7
AL6G50000 Arabidopsis lyrata HOM05D000280 ORTHO05D003998 8.8e-11 69.7 63 65.1
BcaB01g01997 Brassica carinata HOM05D000280 ORTHO05D003998 1.1e-10 69.3 64 62.5
BcaB01g02488 Brassica carinata HOM05D000280 ORTHO05D003998 1.1e-10 69.3 63 58.7
Actinidia24315 Actinidia chinensis HOM05D000280 ORTHO05D018240 1.5e-10 68.9 61 62.3
Cpa.g.sc9.120 Carica papaya HOM05D000280 ORTHO05D003998 1.5e-10 68.9 63 57.1
BcaC01g06722 Brassica carinata HOM05D000280 ORTHO05D003998 2.6e-10 68.2 63 58.7
A03p30720 Brassica napus HOM05D000280 ORTHO05D003998 2.6e-10 68.2 63 58.7
C03p37420 Brassica napus HOM05D000280 ORTHO05D003998 2.6e-10 68.2 63 58.7
BolC3t16034H Brassica oleracea HOM05D000280 ORTHO05D003998 2.6e-10 68.2 63 58.7
BraA03t12251Z Brassica rapa HOM05D000280 ORTHO05D003998 2.6e-10 68.2 63 58.7
GSVIVG01011073001 Vitis vinifera HOM05D000280 ORTHO05D003998 2.6e-10 68.2 60 56.7
A09p02250 Brassica napus HOM05D000280 ORTHO05D003998 5.7e-10 67.0 65 58.5
BraA09t35874Z Brassica rapa HOM05D000280 ORTHO05D003998 5.7e-10 67.0 65 58.5
BolC9t53166H Brassica oleracea HOM05D000280 ORTHO05D003998 7.4e-10 66.6 66 57.6
Actinidia00728 Actinidia chinensis HOM05D000280 ORTHO05D003998 9.7e-10 66.2 61 60.7
Aa31LG1G9230 Aethionema arabicum HOM05D000280 ORTHO05D003998 9.7e-10 66.2 63 61.9
Cfa006096 Carpinus fangiana HOM05D000280 ORTHO05D003998 1.3e-09 65.9 61 62.3
BcaC04g24022 Brassica carinata HOM05D000280 ORTHO05D003998 2.2e-09 65.1 66 56.1
C09p02350 Brassica napus HOM05D000280 ORTHO05D003998 2.2e-09 65.1 66 56.1
CSS0001241 Camellia sinensis var. sinensis HOM05D000280 ORTHO05D003998 1.4e-08 62.4 61 54.1
FAN20G0293 Fragaria x ananassa HOM05D000280 ORTHO05D003998 1.4e-08 62.4 59 54.2
FAN24G2240 Fragaria x ananassa HOM05D000280 ORTHO05D003998 1.8e-08 62.0 60 56.7
Atru.chr5.1351 Acer truncatum HOM05D000280 ORTHO05D003998 2.4e-08 61.6 59 52.5
Ciclev10020118m.g Citrus clementina HOM05D000280 ORTHO05D003998 2.4e-08 61.6 63 52.4
FvH4_2g24070 Fragaria vesca HOM05D000280 ORTHO05D003998 2.4e-08 61.6 59 54.2
TWI59G0558 Tripterygium wilfordii HOM05D000280 ORTHO05D003998 2.4e-08 61.6 65 53.8
Hma1.2p1_0257F.1_g103840 Hydrangea macrophylla HOM05D000280 ORTHO05D003998 3.1e-08 61.2 63 57.1
Sabra02G0168200 Salix brachista HOM05D000280 ORTHO05D003998 4.1e-08 60.8 60 58.3
Sabra14G0104200 Salix brachista HOM05D000280 ORTHO05D003998 4.1e-08 60.8 63 54.0
TWI14G0121 Tripterygium wilfordii HOM05D000280 ORTHO05D003998 4.1e-08 60.8 67 50.7
MD03G1270100 Malus domestica HOM05D000280 ORTHO05D003998 5.3e-08 60.5 65 53.8
Lj1A43T59 Lonicera japonica HOM05D000280 ORTHO05D003998 6.9e-08 60.1 64 53.1
Manes.01G210600 Manihot esculenta HOM05D000280 ORTHO05D003998 6.9e-08 60.1 63 57.1
Potri.002G215900 Populus trichocarpa HOM05D000280 ORTHO05D003998 6.9e-08 60.1 62 58.1
Prupe.8G246000 Prunus persica HOM05D000280 ORTHO05D003998 6.9e-08 60.1 59 54.2
Potri.014G138100 Populus trichocarpa HOM05D000280 ORTHO05D003998 1.2e-07 59.3 63 52.4
FAN27G0360 Fragaria x ananassa HOM05D000280 ORTHO05D003998 2.0e-07 58.5 59 50.8
CANSAT25G3248 Cannabis sativa HOM05D000280 ORTHO05D003998 3.4e-07 57.8 63 54.0
FAN15G3130 Fragaria x ananassa HOM05D000280 ORTHO05D003998 3.4e-07 57.8 59 50.8
Dinv32967 Davidia involucrata HOM05D000280 ORTHO05D003998 5.9e-07 57.0 57 57.9
QL12p022891 Quercus lobata HOM05D000280 ORTHO05D003998 5.9e-07 57.0 64 59.4
Manes.05G072900 Manihot esculenta HOM05D000280 ORTHO05D003998 7.7e-07 56.6 62 53.2
Sc24g0004080 Simmondsia chinensis HOM05D000280 ORTHO05D003998 7.7e-07 56.6 60 56.7
vmacro02545 Vaccinium macrocarpon HOM05D000280 ORTHO05D003998 7.7e-07 56.6 64 53.1
MD11G1290900 Malus domestica HOM05D000280 ORTHO05D003998 1.0e-06 56.2 65 50.8
PGR044G0952 Punica granatum HOM05D000280 ORTHO05D003998 2.2e-06 55.1 60 53.3
Rhsim13G0022100 Rhododendron simsii HOM05D000280 ORTHO05D003998 2.9e-06 54.7 63 52.4
Nn8g39176 Nelumbo nucifera HOM05D000280 ORTHO05D003998 5.0e-06 53.9 63 49.2
TAR636G2522 Trochodendron aralioides HOM05D000280 ORTHO05D003998 5.0e-06 53.9 62 46.8
arahy.Tifrunner.gnm1.ann1.EF2YWP Arachis hypogaea HOM05D000280 ORTHO05D003998 6.5e-06 53.5 65 53.8
Lsat_1_v5_gn_5_187560 Lactuca sativa HOM05D000280 ORTHO05D003998 6.5e-06 53.5 63 47.6
Sopen09g028810 Solanum pennellii HOM05D000280 ORTHO05D003998 6.5e-06 53.5 62 46.8
CAN.G956.1 Capsicum annuum HOM05D000280 ORTHO05D003998 8.5e-06 53.1 63 46.0
ClCG09G006820 Citrullus lanatus HOM05D000280 ORTHO05D003998 8.5e-06 53.1 61 50.8
Cc01_g19830 Coffea canephora HOM05D000280 ORTHO05D003998 8.5e-06 53.1 64 48.4
ECA248G2882 Erigeron canadensis HOM05D000280 ORTHO05D003998 8.5e-06 53.1 66 45.5
Nitab4.5_0001323g0040 Nicotiana tabacum HOM05D000280 ORTHO05D003998 8.5e-06 53.1 63 44.4


User provided reference genes

Program Settings