Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 5.5e-182 641.0 354 100.0
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 1.2e-165 586.6 356 87.6
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 2.8e-165 585.5 357 84.0
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 8.3e-162 573.9 354 86.7
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 3.2e-161 572.0 354 86.7
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 5.2e-156 554.7 357 81.5
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 2.0e-155 552.7 359 84.7
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 3.4e-155 552.0 317 92.4
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 4.4e-155 551.6 359 84.4
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 5.8e-155 551.2 358 83.5
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 1.7e-154 549.7 358 83.8
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 4.1e-153 545.0 313 90.7
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 7.0e-153 544.3 318 90.3
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 3.7e-146 521.9 315 86.3
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 1.2e-141 506.9 317 83.9
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 4.9e-130 468.4 314 78.3
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 2.4e-129 466.1 355 69.0
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 7.1e-129 464.5 350 71.4
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 2.7e-128 462.6 355 70.7
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 2.3e-127 459.5 359 68.8
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 3.9e-127 458.8 355 70.1
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 1.5e-126 456.8 355 69.3
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 1.9e-126 456.4 314 76.8
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 1.3e-125 453.8 311 75.9
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 2.1e-125 453.0 310 74.2
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 2.8e-125 452.6 312 71.5
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 3.6e-125 452.2 309 75.4
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 4.8e-125 451.8 312 72.8
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 6.9e-124 448.0 312 72.4
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 9.0e-124 447.6 306 71.9
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 1.2e-123 447.2 314 69.7
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 2.0e-123 446.4 352 70.2
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 3.4e-123 445.7 313 70.6
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 3.4e-123 445.7 312 70.8
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 4.5e-123 445.3 312 72.4
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 9.9e-123 444.1 367 67.6
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 1.3e-122 443.7 317 69.7
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 2.9e-122 442.6 312 73.1
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 6.4e-122 441.4 313 69.0
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 6.4e-122 441.4 310 69.7
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 8.4e-122 441.0 308 72.7
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 8.4e-122 441.0 311 70.7
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 1.1e-121 440.7 312 69.2
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 1.9e-121 439.9 307 71.3
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 4.2e-121 438.7 313 72.8
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 7.1e-121 438.0 351 64.4
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 7.1e-121 438.0 351 64.4
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 9.3e-121 437.6 353 64.6
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 9.3e-121 437.6 312 68.9
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 1.6e-120 436.8 307 70.0
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 3.5e-120 435.6 312 68.9
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 6.0e-120 434.9 310 72.6
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 1.3e-119 433.7 313 68.1
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 3.9e-119 432.2 312 67.9
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 6.7e-119 431.4 312 67.6
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 1.9e-118 429.9 307 73.0
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 3.3e-118 429.1 311 71.4
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 4.3e-118 428.7 308 71.8
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 5.6e-118 428.3 340 64.7
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 5.6e-118 428.3 309 70.6
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 9.6e-118 427.6 309 71.5
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 9.6e-118 427.6 309 68.3
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 1.6e-117 426.8 315 69.5
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 2.8e-117 426.0 309 71.2
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 2.8e-117 426.0 309 71.2
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 2.8e-117 426.0 309 71.2
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 2.8e-117 426.0 311 72.3
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 2.8e-117 426.0 337 65.6
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 3.7e-117 425.6 314 69.7
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 8.1e-117 424.5 313 66.8
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 1.1e-116 424.1 312 66.3
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 6.9e-116 421.4 312 67.3
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 2.6e-115 419.5 311 66.6
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 3.8e-114 415.6 313 71.9
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 1.1e-113 414.1 312 70.5
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 1.9e-113 413.3 309 66.0
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 4.2e-113 412.1 312 71.5
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 1.2e-112 410.6 311 70.1
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 3.0e-111 406.0 285 71.2
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 6.7e-111 404.8 309 65.7
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 2.5e-110 402.9 312 66.0
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 1.3e-109 400.6 313 65.2
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 2.1e-109 399.8 277 71.8
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 6.2e-109 398.3 314 64.6
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 6.2e-109 398.3 316 68.4
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 8.2e-109 397.9 308 67.9
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 8.2e-109 397.9 280 72.1
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 3.1e-108 396.0 305 64.9
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 5.3e-108 395.2 310 69.0
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 9.0e-108 394.4 314 67.2
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 2.0e-107 393.3 308 67.9
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 2.6e-107 392.9 255 74.5
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 2.6e-107 392.9 311 63.0
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 1.7e-106 390.2 313 68.1
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 1.7e-106 390.2 315 62.5
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 7.1e-105 384.8 280 68.9
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 2.1e-104 383.3 301 64.5
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 2.1e-104 383.3 323 60.7
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 1.3e-103 380.6 315 66.3
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 8.7e-103 377.9 335 64.2
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 3.3e-102 375.9 314 63.1
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 5.7e-102 375.2 282 70.2
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 8.2e-101 371.3 279 67.7
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 1.1e-100 370.9 289 64.4
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.8e-100 370.2 271 71.6
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 6.9e-100 368.2 280 68.9
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 1.2e-99 367.5 321 59.2
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 5.9e-99 365.2 313 59.4
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 5.0e-98 362.1 323 62.8
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 6.5e-98 361.7 278 72.3
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 1.0e-95 354.4 294 63.6
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 2.3e-95 353.2 278 70.9
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 2.8e-93 346.3 218 77.1
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 1.0e-90 337.8 218 73.4
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 1.3e-90 337.4 270 70.4
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 3.8e-90 335.9 319 59.2
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 9.7e-86 321.2 234 68.4
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 1.5e-83 313.9 323 49.8
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 7.7e-83 311.6 277 58.5
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 2.9e-82 309.7 257 61.5
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 2.3e-79 300.1 259 60.2
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 3.9e-79 299.3 230 66.5
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 1.1e-76 291.2 228 65.8
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 2.9e-74 283.1 223 65.5
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 2.3e-71 273.5 272 60.3
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 1.7e-69 267.3 279 54.1
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 2.7e-67 260.0 140 90.0
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 1.3e-66 257.7 271 52.0
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 1.9e-65 253.8 224 60.7
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 1.4e-63 247.7 176 63.1
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.8e-63 247.3 158 74.7
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 2.3e-63 246.9 232 53.4
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 1.5e-62 244.2 226 59.7
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 2.0e-62 243.8 200 60.5
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 2.5e-57 226.9 223 55.6
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 2.5e-57 226.9 212 56.6
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 2.5e-57 226.9 212 56.6
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 3.3e-57 226.5 185 64.3
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 2.1e-56 223.8 218 56.9
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 4.9e-53 212.6 237 48.5
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 1.4e-52 211.1 180 63.9
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 3.5e-51 206.5 227 51.1
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 2.5e-49 200.3 244 50.4
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 7.3e-49 198.7 136 69.9
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 3.7e-45 186.4 141 66.0
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 4.6e-43 179.5 229 45.0
CDE08G1615 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 5.6e-41 172.6 114 77.2
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 1.4e-39 167.9 148 52.7
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 2.2e-37 160.6 253 36.0
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 2.7e-35 153.7 159 48.4
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 3.9e-34 149.8 186 49.5
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 1.1e-33 148.3 165 49.1
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 1.1e-33 148.3 165 49.1
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 2.5e-33 147.1 165 49.1
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 2.8e-32 143.7 264 45.8
Sc08g0001920 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.2e-30 138.3 113 55.8
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 1.4e-28 131.3 206 38.8
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 7.1e-28 129.0 80 78.8
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 6.6e-26 122.5 111 61.3
QL04p075812 Quercus lobata HOM05D003601 ORTHO05D004896 2.5e-25 120.6 82 75.6
AL6G52380 Arabidopsis lyrata HOM05D003601 ORTHO05D015895 1.1e-23 115.2 71 64.8
AT4G01023 Arabidopsis thaliana HOM05D003601 ORTHO05D015895 4.0e-23 113.2 71 63.4
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 6.8e-23 112.5 168 47.0
Carub.0006s3606 Capsella rubella HOM05D003601 ORTHO05D015895 7.6e-22 109.0 105 46.7
Thhalv10029283m.g Eutrema salsugineum HOM05D003601 ORTHO05D015895 9.9e-22 108.6 71 57.7
C02p38360 Brassica napus HOM05D003601 ORTHO05D015895 4.9e-21 106.3 71 60.6
CARHR249320 Cardamine hirsuta HOM05D003601 ORTHO05D015895 1.4e-20 104.8 70 55.7
A02p24300 Brassica napus HOM05D003601 ORTHO05D015895 1.9e-20 104.4 71 59.2
BraA02t07420Z Brassica rapa HOM05D003601 ORTHO05D015895 1.9e-20 104.4 71 59.2
Sp6g01130 Schrenkiella parvula HOM05D003601 ORTHO05D015895 2.4e-20 104.0 71 59.2
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 2.1e-19 100.9 66 63.6
BcaC03g16072 Brassica carinata HOM05D003601 ORTHO05D015895 1.7e-18 97.8 76 53.9
BolC2t09850H Brassica oleracea HOM05D003601 ORTHO05D015895 1.7e-18 97.8 76 53.9
RcHm_v2.0_Chr3g0461311 Rosa chinensis HOM05D003601 ORTHO05D004896 1.7e-18 97.8 305 27.9
EL10Ac9g21063 Beta vulgaris HOM05D003601 ORTHO05D004896 2.3e-18 97.4 109 54.1
A01p41390 Brassica napus HOM05D003601 ORTHO05D023606 1.1e-15 88.6 65 55.4
BNapus_Darmor_BZH_scaffold_78p00320 Brassica napus HOM05D003601 ORTHO05D023606 1.1e-15 88.6 65 55.4
CBR_g49218 Chara braunii HOM05D003601 ORTHO05D004896 1.5e-14 84.7 176 38.1
Actinidia20220 Actinidia chinensis HOM05D003601 ORTHO05D004896 4.4e-14 83.2 77 50.6
FvH4_5g30073 Fragaria vesca HOM05D003601 ORTHO05D004896 2.9e-13 80.5 110 39.1
TPR.G13782 Trifolium pratense HOM05D003601 ORTHO05D037558 9.3e-12 75.5 87 52.9
TPR.G20298 Trifolium pratense HOM05D003601 ORTHO05D037558 9.3e-12 75.5 91 51.6
A02p43170 Brassica napus HOM05D003601 ORTHO05D013806 1.8e-07 61.2 89 41.6
C01p04070 Brassica napus HOM05D003601 ORTHO05D013806 1.8e-07 61.2 71 50.7
TAR375G0774 Trochodendron aralioides HOM05D003601 ORTHO05D004896 3.1e-07 60.5 100 38.0


User provided reference genes

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