Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G2786 Cannabis sativa HOM05D004899 ORTHO05D006580 1.1e-116 423.3 217 100.0
CANSAT80G2333 Cannabis sativa HOM05D004899 ORTHO05D006580 1.4e-106 389.8 202 98.5
CANSAT54G0581 Cannabis sativa HOM05D004899 ORTHO05D006580 3.6e-91 338.6 182 95.6
Dinv06242 Davidia involucrata HOM05D004899 ORTHO05D006580 3.7e-72 275.4 182 73.6
QL03p029772 Quercus lobata HOM05D004899 ORTHO05D006580 7.1e-71 271.2 182 73.6
PGR142G4366 Punica granatum HOM05D004899 ORTHO05D006580 2.1e-70 269.6 182 73.6
Prupe.6G350900 Prunus persica HOM05D004899 ORTHO05D006580 2.7e-70 269.2 182 72.5
RcHm_v2.0_Chr3g0449481 Rosa chinensis HOM05D004899 ORTHO05D006580 3.5e-70 268.9 182 73.1
FvH4_6g01740 Fragaria vesca HOM05D004899 ORTHO05D006580 7.8e-70 267.7 182 72.5
FAN05G0331 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.7e-69 266.5 182 72.0
FAN05G3121 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.7e-69 266.5 182 72.0
FAN14G2287 Fragaria x ananassa HOM05D004899 ORTHO05D006580 3.9e-69 265.4 182 72.0
FAN14G4075 Fragaria x ananassa HOM05D004899 ORTHO05D006580 3.9e-69 265.4 182 72.0
Atru.chr2.1001 Acer truncatum HOM05D004899 ORTHO05D006580 5.1e-69 265.0 197 67.0
FAN09G4068 Fragaria x ananassa HOM05D004899 ORTHO05D006580 8.6e-69 264.2 182 71.4
Actinidia34758 Actinidia chinensis HOM05D004899 ORTHO05D006580 1.9e-68 263.1 182 70.9
CAN.G1465.15 Capsicum annuum HOM05D004899 ORTHO05D006580 1.9e-68 263.1 181 72.4
Duzib106G1539 Durio zibethinus HOM05D004899 ORTHO05D006580 2.5e-68 262.7 182 70.3
Nitab4.5_0003965g0030 Nicotiana tabacum HOM05D004899 ORTHO05D006580 2.5e-68 262.7 188 70.2
TAR362G0172 Trochodendron aralioides HOM05D004899 ORTHO05D006580 2.5e-68 262.7 182 69.8
CiPaw.08G118600 Carya illinoinensis HOM05D004899 ORTHO05D006580 3.3e-68 262.3 182 71.4
Solyc05g054950.2 Solanum lycopersicum HOM05D004899 ORTHO05D006580 3.3e-68 262.3 181 71.8
Ciclev10024089m.g Citrus clementina HOM05D004899 ORTHO05D006580 4.3e-68 261.9 212 62.3
Thecc.05G269900 Theobroma cacao HOM05D004899 ORTHO05D006580 4.3e-68 261.9 182 70.9
PGSC0003DMG400023503 Solanum tuberosum HOM05D004899 ORTHO05D006580 5.6e-68 261.5 181 71.8
TWI36G0265 Tripterygium wilfordii HOM05D004899 ORTHO05D006580 9.5e-68 260.8 182 70.3
Potri.013G047800 Populus trichocarpa HOM05D004899 ORTHO05D006580 1.2e-67 260.4 182 70.9
CSS0003371 Camellia sinensis var. sinensis HOM05D004899 ORTHO05D006580 2.8e-67 259.2 182 69.8
MSTRG.8229 Avicennia marina HOM05D004899 ORTHO05D006580 3.6e-67 258.8 182 70.3
Sopen05g033410 Solanum pennellii HOM05D004899 ORTHO05D006580 4.7e-67 258.5 181 71.3
ClCG11G010490 Citrullus lanatus HOM05D004899 ORTHO05D006580 6.2e-67 258.1 182 68.1
Peaxi162Scf00015g02911 Petunia axillaris HOM05D004899 ORTHO05D006580 6.2e-67 258.1 182 70.3
MD04G1231200 Malus domestica HOM05D004899 ORTHO05D006580 1.4e-66 256.9 183 71.0
Migut.F01538 Erythranthe guttata HOM05D004899 ORTHO05D006580 2.3e-66 256.1 182 68.7
Rhsim09G0133700 Rhododendron simsii HOM05D004899 ORTHO05D006580 8.9e-66 254.2 182 69.8
MELO3C008694.2 Cucumis melo HOM05D004899 ORTHO05D006580 1.2e-65 253.8 182 67.6
Manes.08G140200 Manihot esculenta HOM05D004899 ORTHO05D006580 1.2e-65 253.8 182 68.7
COL.COLO4_15501 Corchorus olitorius HOM05D004899 ORTHO05D006580 2.0e-65 253.1 182 67.6
GSVIVG01023441001 Vitis vinifera HOM05D004899 ORTHO05D006580 2.6e-65 252.7 182 69.2
CsaV3_2G009880 Cucumis sativus L. HOM05D004899 ORTHO05D006580 4.4e-65 251.9 182 66.5
Gohir.A11G246300 Gossypium hirsutum HOM05D004899 ORTHO05D006580 4.4e-65 251.9 182 67.0
Potri.019G020000 Populus trichocarpa HOM05D004899 ORTHO05D006580 4.4e-65 251.9 182 69.2
SalBow6G5574 Salvia bowleyana HOM05D004899 ORTHO05D006580 5.8e-65 251.5 182 68.7
Eucgr.B02154 Eucalyptus grandis HOM05D004899 ORTHO05D006580 7.6e-65 251.1 182 67.0
Gohir.D11G256500 Gossypium hirsutum HOM05D004899 ORTHO05D006580 1.3e-64 250.4 182 67.6
Gorai.007G274800 Gossypium raimondii HOM05D004899 ORTHO05D006580 1.3e-64 250.4 182 67.6
Sabra19G0032200 Salix brachista HOM05D004899 ORTHO05D006580 1.7e-64 250.0 182 69.2
Sed0011238 Sechium edule HOM05D004899 ORTHO05D006580 2.2e-64 249.6 185 67.0
Lj2A44T81 Lonicera japonica HOM05D004899 ORTHO05D006580 1.9e-63 246.5 223 56.5
Haze_04413 Corylus avellana HOM05D004899 ORTHO05D006580 4.1e-63 245.4 193 65.3
Hund22166 Selenicereus undatus HOM05D004899 ORTHO05D006580 2.1e-62 243.0 182 66.5
Sc20g0000690 Simmondsia chinensis HOM05D004899 ORTHO05D006580 2.7e-62 242.7 182 65.4
PSO674G0057 Papaver somniferum HOM05D004899 ORTHO05D006580 4.6e-62 241.9 182 65.9
Cc02_g08720 Coffea canephora HOM05D004899 ORTHO05D006580 1.0e-61 240.7 192 65.6
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 1.0e-61 240.7 181 64.6
HanXRQChr08g0216941 Helianthus annuus HOM05D004899 ORTHO05D006580 1.3e-61 240.4 181 63.0
Lsat_1_v5_gn_8_25181 Lactuca sativa HOM05D004899 ORTHO05D006580 1.7e-61 240.0 181 65.2
MBI07_g12932_MAGBIO Magnolia biondii HOM05D004899 ORTHO05D006580 1.9e-60 236.5 183 66.1
Nn1g02931 Nelumbo nucifera HOM05D004899 ORTHO05D006580 3.3e-60 235.7 182 63.2
AL3G14410 Arabidopsis lyrata HOM05D004899 ORTHO05D006580 7.3e-60 234.6 183 63.9
unitig_899.g15065 Utricularia gibba HOM05D004899 ORTHO05D006580 9.6e-60 234.2 183 65.6
AUR62004828 Chenopodium quinoa HOM05D004899 ORTHO05D006580 4.7e-59 231.9 182 62.6
DCAR_023087 Daucus carota HOM05D004899 ORTHO05D006580 4.7e-59 231.9 181 63.5
Sp3g03310 Schrenkiella parvula HOM05D004899 ORTHO05D006580 4.7e-59 231.9 183 63.4
SGA_v2.0_scaffold426G51496 Striga asiatica HOM05D004899 ORTHO05D006580 6.2e-59 231.5 182 64.3
VMungo0540G0495 Vigna mungo HOM05D004899 ORTHO05D006580 1.8e-58 229.9 182 63.7
AT3G04460 Arabidopsis thaliana HOM05D004899 ORTHO05D006580 3.1e-58 229.2 183 62.3
EL10Ac4g08990 Beta vulgaris HOM05D004899 ORTHO05D006580 5.2e-58 228.4 182 60.4
Carub.0003s0362 Capsella rubella HOM05D004899 ORTHO05D006580 6.9e-58 228.0 183 61.7
Aa31LG5G14890 Aethionema arabicum HOM05D004899 ORTHO05D006580 8.9e-58 227.6 183 62.3
Aqoxy5G00161 Aquilegia oxysepala HOM05D004899 ORTHO05D006580 1.2e-57 227.3 182 64.8
Thhalv10020878m.g Eutrema salsugineum HOM05D004899 ORTHO05D006580 1.5e-57 226.9 185 62.7
BcaB04g19333 Brassica carinata HOM05D004899 ORTHO05D006580 3.4e-57 225.7 183 61.7
vmacro10377 Vaccinium macrocarpon HOM05D004899 ORTHO05D006580 2.2e-56 223.0 206 57.8
THA.LOC104820770 Tarenaya hassleriana HOM05D004899 ORTHO05D006580 2.9e-56 222.6 182 59.9
Ah.06g191810 Amaranthus hybridus HOM05D004899 ORTHO05D006580 3.8e-56 222.2 182 61.0
AUR62040914 Chenopodium quinoa HOM05D004899 ORTHO05D006580 6.4e-56 221.5 182 60.4
Nitab4.5_0000914g0090 Nicotiana tabacum HOM05D004899 ORTHO05D006580 9.3e-55 217.6 188 63.3
Glyma.03G250100 Glycine max HOM05D004899 ORTHO05D006580 1.2e-54 217.2 182 62.1
arahy.Tifrunner.gnm1.ann1.A8VMLZ Arachis hypogaea HOM05D004899 ORTHO05D006580 1.6e-54 216.9 185 61.6
arahy.Tifrunner.gnm1.ann1.VXFY9N Arachis hypogaea HOM05D004899 ORTHO05D006580 4.6e-54 215.3 185 61.1
BraA03t12536Z Brassica rapa HOM05D004899 ORTHO05D006580 4.6e-54 215.3 186 61.3
CARHR078590 Cardamine hirsuta HOM05D004899 ORTHO05D006580 7.8e-54 214.5 183 60.1
Glyma.19G247700 Glycine max HOM05D004899 ORTHO05D006580 7.8e-54 214.5 182 61.5
Phvul.006G104800 Phaseolus vulgaris HOM05D004899 ORTHO05D006580 1.0e-53 214.2 182 60.4
A03p33610 Brassica napus HOM05D004899 ORTHO05D006580 1.3e-53 213.8 186 60.8
Os10g0467200 Oryza sativa ssp. japonica HOM05D004899 ORTHO05D006580 1.3e-53 213.8 183 59.0
Zm00001eb046420 Zea mays HOM05D004899 ORTHO05D006580 3.9e-53 212.2 183 58.5
BolC3t16350H Brassica oleracea HOM05D004899 ORTHO05D006580 6.6e-53 211.5 186 60.8
BcaC01g04376 Brassica carinata HOM05D004899 ORTHO05D006580 1.9e-52 209.9 186 60.2
C03p40810 Brassica napus HOM05D004899 ORTHO05D006580 1.9e-52 209.9 186 60.2
Ca_11390_v3 Cicer arietinum L. HOM05D004899 ORTHO05D006580 1.3e-51 207.2 182 57.7
Psat0s1997g0040 Pisum sativum HOM05D004899 ORTHO05D006580 1.1e-50 204.1 182 57.1
A05p43040 Brassica napus HOM05D004899 ORTHO05D006580 5.3e-50 201.8 182 56.0
CDE05G2618 Ceratophyllum demersum HOM05D004899 ORTHO05D006580 2.6e-49 199.5 183 59.0
ATR0736G049 Amborella trichopoda HOM05D004899 ORTHO05D006580 9.9e-49 197.6 183 54.1
Lj1g0026343 Lotus japonicus HOM05D004899 ORTHO05D006580 9.9e-49 197.6 197 54.3
MD12G1249500 Malus domestica HOM05D004899 ORTHO05D006580 9.9e-49 197.6 172 59.3
TPR.G10414 Trifolium pratense HOM05D004899 ORTHO05D006580 2.4e-47 193.0 182 54.9
MD00G1148800 Malus domestica HOM05D004899 ORTHO05D006580 1.2e-46 190.7 191 55.0
Medtr1g116380 Medicago truncatula HOM05D004899 ORTHO05D006580 3.9e-45 185.7 182 54.4
BcaC05g29943 Brassica carinata HOM05D004899 ORTHO05D006580 9.6e-44 181.0 182 52.7
Lalb_Chr04g0253351 Lupinus albus HOM05D004899 ORTHO05D006580 5.3e-42 175.3 186 50.0
BcaC05g30197 Brassica carinata HOM05D004899 ORTHO05D006580 1.9e-39 166.8 191 50.8
HPP92_008536 Vanilla planifolia HOM05D004899 ORTHO05D006580 7.1e-39 164.9 134 61.9
Cpa.g.sc306.4 Carica papaya HOM05D004899 ORTHO05D006580 3.3e-36 156.0 118 68.6
Mapoly0097s0077 Marchantia polymorpha HOM05D004899 ORTHO05D006580 6.9e-34 148.3 190 46.3
C05p62800 Brassica napus HOM05D004899 ORTHO05D006580 2.0e-33 146.7 183 49.2
Pp3c17_6400 Physcomitrium patens HOM05D004899 ORTHO05D006580 1.8e-29 133.7 186 44.6
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 1.1e-28 131.0 147 47.6
SMO367G0182 Selaginella moellendorffii HOM05D004899 ORTHO05D006580 5.7e-28 128.6 182 42.3
SEGI_08581 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 7.6e-25 118.2 154 43.5
AagrBONN_evm.TU.Sc2ySwM_228.2413 Anthoceros agrestis HOM05D004899 ORTHO05D006580 1.0e-24 117.9 186 39.8
BcaC06g35909 Brassica carinata HOM05D004899 ORTHO05D006580 2.2e-24 116.7 151 43.0
BraA04t16133Z Brassica rapa HOM05D004899 ORTHO05D006580 6.1e-22 108.6 100 55.0
C01p22380 Brassica napus HOM05D004899 ORTHO05D006580 1.3e-21 107.5 111 50.5
SHI31416 Sapria himalayana HOM05D004899 ORTHO05D006580 3.3e-20 102.8 160 45.0
Oeu050631.1 Olea europaea HOM05D004899 ORTHO05D006580 2.8e-19 99.8 81 66.7
Hma1.2p1_1336F.1_g276500 Hydrangea macrophylla HOM05D004899 ORTHO05D006580 4.8e-19 99.0 63 77.8
BolC6t38557H Brassica oleracea HOM05D004899 ORTHO05D006580 9.4e-15 84.7 100 45.0
BolC5t34933H Brassica oleracea HOM05D004899 ORTHO05D006580 6.1e-14 82.0 66 63.6
Cre06.g263602 Chlamydomonas reinhardtii HOM05D004899 ORTHO05D006580 2.0e-12 77.0 184 29.3
BcaC09g50711 Brassica carinata HOM05D004899 ORTHO05D006580 2.6e-12 76.6 111 41.4
RhsimUnG0045000 Rhododendron simsii HOM05D004899 ORTHO05D006580 6.3e-11 72.0 170 34.1
Cc05_g01300 Coffea canephora HOM05D004899 ORTHO05D006580 3.1e-10 69.7 37 89.2
Cc04_g06470 Coffea canephora HOM05D004899 ORTHO05D034818 4.1e-10 69.3 47 70.2
PRCOL_00005674 Prasinoderma coloniale HOM05D004899 ORTHO05D006580 5.9e-09 65.5 186 29.0
FAN05G0601 Fragaria x ananassa HOM05D004899 ORTHO05D006580 7.7e-09 65.1 57 50.9
Psat3g113200 Pisum sativum HOM05D004899 ORTHO05D034818 1.0e-08 64.7 45 66.7
SEGI_05516 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 5.0e-08 62.4 37 81.1
CANSAT56G0991 Cannabis sativa HOM05D005108 ORTHO05D006171 3.2e-07 59.7 31 96.8
QL05p027656 Quercus lobata HOM05D005108 ORTHO05D006171 2.1e-06 57.0 31 87.1
MBI14_g47597_MAGBIO Magnolia biondii HOM05D000572 ORTHO05D002399 7.9e-06 55.1 50 62.0


User provided reference genes

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